Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Reverse (-)

65802305 .. 65804234

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGAGTCAAGGTCCGCCGGAAAGCCTCGTTTCACCGTCAGTTCAACGGCGACTACATCGACGTCCGCTCCAATCCGTACTTGATGAAAATCTTGCGGAAACAAGGTGACAAGGAAGTTTTGTTTGCTGATAAGGTGTTGAAATTTACTAGTACTGGAAAAATGAAGCGGCGGATTTTGATGATCACTGACTTTGCTATCTACATTGTTGATCCTGAGGCCGATGCGCTGAAGCGGAGGATAGCTCTTGCGGCTGTGGAGAAAATGTGCTTGAGTGAGTTGAGTGATAATTTTTTCGCAGTGATTATTCCCACAGAGTATGATTTGCTCATGGCTAGTACTCGCAAGACGGAGATCGTTACTGTCTTGGTTGAGGCTACTAAGAGTGCTTCTGATTACGAGCTTGAAGTTTGTTTCGGTAACAGTTTTGAGTATAATGCAGATGCAGAGTTAGTGAAGGAGGTTCAGTTTGAAGAAGTTGAAGGAGGTGTTAAAACAAGAATCCTGAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

171

Amino Acids

19.59

Weight (kDa)

8.45

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	6 - 159	4.2e-36	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	69
AciI	CCGC	7 cut(s)	16, 67, 97, 169, 172, 235, 251
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	80, 154, 340
AgsI	TTSAA	5 cut(s)	46, 142, 407, 473, 482
AhlI	ACTAGT	1 cut(s)	149
AluBI	AGCT	2 cut(s)	245, 403
AluI	AGCT	2 cut(s)	245, 403
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	26, 119
AvaII	GGWCC	1 cut(s)	13
AxyI	CCTNAGG	2 cut(s)	216, 506
BceAI	ACGGC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	183
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	2 cut(s)	150, 336
BisI	GCNGC	2 cut(s)	170, 252
BlsI	GCNGC	2 cut(s)	171, 253
BmcAI	AGTACT	2 cut(s)	154, 340
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	2 cut(s)	214, 433
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpuEI	CTTGAG	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	7 cut(s)	27, 53, 83, 251, 281, 452, 482
Bse1I	ACTGG	1 cut(s)	160
Bse21I	CCTNAGG	2 cut(s)	216, 506
Bse8I	GATNNNNATC	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	207, 497
BseNI	ACTGG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	19
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	183, 211, 354
BspACI	CCGC	7 cut(s)	16, 67, 97, 169, 172, 235, 251
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	208, 498
BspPI	GGATC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	3 cut(s)	183, 211, 354
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	38, 364, 425
BstACI	GRCGYC	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	216, 381, 506
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	3 cut(s)	186, 214, 357
BstMBI	GATC	3 cut(s)	183, 211, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	251
Bsu36I	CCTNAGG	2 cut(s)	216, 506
BsuRI	GGCC	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	186, 306
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	79, 153, 339
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	7 cut(s)	26, 221, 245, 254, 335, 377, 403
CviKI_1	RGCY	7 cut(s)	26, 221, 245, 254, 335, 377, 403
CviQI	GTAC	3 cut(s)	79, 153, 339
DdeI	CTNAG	3 cut(s)	216, 381, 506
DpnI	GATC	3 cut(s)	185, 213, 356
DpnII	GATC	3 cut(s)	183, 211, 354
EciI	GGCGGA	2 cut(s)	5, 187
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	251
Eco81I	CCTNAGG	2 cut(s)	216, 506
FaeI	CATG	1 cut(s)	334
FaiI	YATR	3 cut(s)	321, 332, 435
FatI	CATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	170, 252
Fsp4HI	GCNGC	2 cut(s)	170, 252
FspBI	CTAG	2 cut(s)	150, 336
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	170, 252
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	6, 501
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	2 cut(s)	26, 119
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	2 cut(s)	215, 505
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	451, 476
HpyCH4III	ACNGT	3 cut(s)	38, 364, 425
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	440, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	3 cut(s)	216, 381, 506
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	183, 211, 354
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	3 cut(s)	32, 141, 228
LweI	GCATC	2 cut(s)	214, 433
MaeI	CTAG	2 cut(s)	150, 336
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	107, 358, 419
MalI	GATC	3 cut(s)	185, 213, 356
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	3 cut(s)	183, 211, 354
MboII	GAAGA	1 cut(s)	485
MluCI	AATT	2 cut(s)	143, 289
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	37, 211, 231, 367, 454, 479, 501
MseI	TTAA	1 cut(s)	492
MspI	CCGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	3 cut(s)	183, 211, 354
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	171, 253
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	3 cut(s)	80, 154, 340
RsaNI	GTAC	3 cut(s)	79, 153, 339
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	170, 252
Sau3AI	GATC	3 cut(s)	183, 211, 354
Sau96I	GGNCC	1 cut(s)	13
ScaI	AGTACT	2 cut(s)	154, 340
SchI	GAGTC	1 cut(s)	15
SetI	ASST	8 cut(s)	15, 66, 109, 138, 247, 405, 465, 490
SfaNI	GCATC	2 cut(s)	214, 433
SinI	GGWCC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	2 cut(s)	143, 289
SsiI	CCGC	7 cut(s)	16, 67, 97, 169, 172, 235, 251
SspMI	CTAG	2 cut(s)	150, 336
TaaI	ACNGT	3 cut(s)	38, 364, 425
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	143, 289
TatI	WGTACW	2 cut(s)	152, 338
TauI	GCSGC	2 cut(s)	172, 254
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	2 cut(s)	193, 306
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	101, 179
TspGWI	ACGGA	2 cut(s)	66, 365
TspRI	CASTG	2 cut(s)	193, 306
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	2 cut(s)	150, 336
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	2 cut(s)	154, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.