RchiOBHm_Chr1g0381741

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009257
Physical Location & Seq
Reverse (-)
66950504 .. 66955073
4570 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2127 bp
ATGGGGAGCTTTAGCGAAGAGGAATTCGCTTTTTTTGATGCCCGTGAGGATATTGCATCAGTGTCTGATGCAAGTCGTGAGAGCATTGAGGTGTTGGAAGCGAGTTCTTCTTCCATGAGTTGGGTTCCGGATAGTTTTCCCTATGATGTGTGGGTTAGAAGCCCGGGGAGTGTGAAGGAGCGTCGGGTTAAGTTTCTGGATTGGATGGAAGTTAGTGCAGAGGAGATTGTGGGAGAGAATATGGTGGAAGTGTCTAGTGATGTGGTGGGGGAAATAGGTAGAGTTAGAGAGAGTAGTGGGGCTGTGTTGAGATCCTTATCTTTTGAAGGGGAGTTTTCTTCAAGTCGGTCTTCAATGTCGTTCTGGGCTAATGAATTTAGAGATGGGAATTTGAGTGGGAGAATGGAGTGTAATGGAGATGAAGTAGGGCCGGTTGGGAAGGTCAGTGAAGGTCGAGAAGTTATTGAAGAGTCTGAGCGCACTTTGTTCTCAGTATCTTCATTATCTCGTCAATTGAGTGAAGTCAAAGCTGAAGAGATTAGCAGTAAGGGGGCCTTACTGAAGAGAGTTAAGAAGAAGTGGTTGCATAGATTTCGGTCCATGACATGCCTTGATGATAGGCAAGGGATTGCTGACAGGTCGGCAGAGAATGATAATGATAGAATTATGGGAATAAGGTCTTATAGAGTGAAGGTTCGTCATTCCGGGAAGCGGTTGAAGGAACTCTCAGCTCTTTATATGGGACAGGATATCCAGGCCCATGAGGGTTCAATTTTGGCCATGAAATTTAGTCCTGATGGACAGTACCTAGCAAGTGCTGGTGAAGATAGGATTGTGCGAGTCTGGCAAGTGGTGGAGAATCAGAGGTGTAATGAACTTGACATTCCAGAGATAGATCCATCCTGCATATACTTCACCGTGAATCATCTCTCTGAACTAAATCCACTATTTGCGGATAAAGAGAAAGTGAGTAAAGCACGTAGCATGACGAAAACATCAGATTCAGCATGTGTTATTTTTCCCCCAAAAGTCTTTCGGATTGTGGACAAACCATTGCATGAGTTTCATGGGCATGGTGGTGAGATTTTGGATCTCTCCTGGTCAAGGAACAATTATCTACTGTCGTCTTCTGTTGACAAAACTGTTCGTCTATGGCAAGTGGGATGCACTGATTGCCTCAAAGTATTTGCACATAGTAATTATGTGACCTGTGTTCAATTCAATCCTATGGATGATAACTACTTTATCAGTGGTTCAATAGATGGCAAAGTTCGCATTTGGGGAATTCCTTGCTGTCAAGTTGTTGATTATAGCGATGTACGAGATATAGTTTCTGCGGTGTGCTATCGCCCTGATGGGCAGGGAGCTATTGTAGGCTCGATGACAGGCATATGCCGCTTTTATAATACATCAGATAATCATTTGCAAATGGACGCTGAAATCTGTTTGTACAGTAAAAAGAAGGCTCCCTGCAAAAAGATAACAGGCTTCGAGTTTTTCCCACAAGATCCTAGCAAAGTAATGGTCACTTGCGCCGATTCGCAAGTCAGAATTCTTCATGGTCTGAATGTGGTTGGAAAATACAAGGGATTACGGAATGCAGCAAACCTGAGATCTGCGACTTTTACTTCAGATGGGAAACATATAATATCAGCAAGTGAGGATTCTAATGTATACATATGGAACTGCAGTGATCAGGAGAAAAACTTTTTCTCACAAGTAAAAAAAACTAAATCATGTGAGCGGTTCACCACTGATGCTTCCGTAGCAATACCATGGTCTGGTTTGAAATGTGAGGCCCTAGAAAATGCTAGGAACGTTGGTGTCGTGGAAAATAATCTACCTGAAACTATACCTTTTTCTTCACCCGCATGCTTTTCTCTGAGCCAAGAATCTCTCCTTCAGTCTATTCCGAAAGGATCTGCGACTTGGCCCGAGGAGAAGCTTCCAACATCAAGTGCCTTGACAAAGTCATCTACTATGCACAGATCCGAGTACAAGTTTTTTAAAACTTCATGCCAGAGCACATCGAGTTCCCATGCATGGGGTCTGGTTATTGTGACCGCAGGTTGGGATGGAAGGATCAAATCATTCCACAATTATGGGTTACCAGTACCTGTTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

708

Amino Acids

79.1

Weight (kDa)

6.05

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 228 - 291 1.9e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 241 - 473 1.6e-15 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 249 - 287 7.6e-08 THOC3 beta-propeller domain
WD40 PF00400 251 - 282 2.4e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 251 - 290 5.6e-07 WDR5 beta-propeller domain
WD40_Gbeta PF25391 334 - 562 9.5e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 344 - 567 4.2e-35 WDR5 beta-propeller domain
WD40_Prp19 PF24814 348 - 474 2.6e-12 Prp19 WD40 domain
WD40 PF00400 350 - 385 3.1e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 351 - 429 1.6e-11 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 352 - 412 1.2e-07 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 352 - 454 8.2e-10 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 355 - 411 5.4e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 358 - 566 2.9e-21 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 370 - 473 2.3e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 373 - 476 2.1e-06 WDR90/POC16, second beta-propeller
WD40 PF00400 391 - 427 1.2e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 401 - 571 5e-10 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
Acc36I ACCTGC 1 cut(s) 2057
AccB7I CCANNNNNTGG 2 cut(s) 120, 1781
AccBSI CCGCTC 1 cut(s) 1744
AccI GTMKAC 1 cut(s) 1674
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 7 cut(s) 712, 953, 1337, 1396, 1744, 1869, 2064
AclI AACGTT 1 cut(s) 1818
AclWI GGATC 7 cut(s) 306, 890, 1098, 1502, 1927, 1983, 2090
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 6 cut(s) 23, 374, 388, 785, 1284, 1551
AcuI CTGAAG 4 cut(s) 552, 581, 1614, 1886
AfaI GTAC 5 cut(s) 806, 1320, 1451, 1997, 2115
AfiI CCNNNNNNNGG 7 cut(s) 120, 711, 1104, 1781, 2043, 2044, 2070
AjnI CCWGG 2 cut(s) 753, 1097
AluBI AGCT 5 cut(s) 9, 530, 731, 1367, 1945
AluI AGCT 5 cut(s) 9, 530, 731, 1367, 1945
Alw21I GWGCWC 1 cut(s) 2027
AlwI GGATC 7 cut(s) 306, 890, 1098, 1502, 1927, 1983, 2090
AlwNI CAGNNNCTG 2 cut(s) 65, 2117
Ama87I CYCGRG 2 cut(s) 163, 1934
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 6 cut(s) 428, 552, 756, 777, 1797, 1931
ApeKI GCWGC 1 cut(s) 1601
ApoI RAATTY 6 cut(s) 23, 374, 388, 785, 1284, 1551
ArsI GACNNNNNNTTYG 2 cut(s) 1509, 1541
AspLEI GCGC 2 cut(s) 480, 1535
AspS9I GGNCC 6 cut(s) 428, 552, 597, 757, 1798, 1932
AsuC2I CCSGG 3 cut(s) 164, 165, 706
AsuHPI GGTGA 5 cut(s) 833, 907, 1091, 1741, 1857
AvaI CYCGRG 2 cut(s) 163, 1934
AvaII GGWCC 1 cut(s) 597
BalI TGGCCA 1 cut(s) 779
BbsI GAAGAC 2 cut(s) 342, 1119
Bbv12I GWGCWC 1 cut(s) 2027
BbvI GCAGC 1 cut(s) 1613
BccI CCATC 8 cut(s) 199, 377, 791, 907, 1256, 1349, 1628, 2069
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 2 cut(s) 755, 1099
BclI TGATCA 1 cut(s) 1693
BcnI CCSGG 3 cut(s) 164, 165, 706
BfaI CTAG 5 cut(s) 255, 809, 1512, 1802, 1812
BfmI CTRYAG 1 cut(s) 1687
BfuAI ACCTGC 1 cut(s) 2057
BglII AGATCT 1 cut(s) 1613
BisI GCNGC 2 cut(s) 1396, 1602
BlsI GCNGC 2 cut(s) 1397, 1603
Bme1390I CCNGG 5 cut(s) 164, 165, 706, 755, 1099
Bme18I GGWCC 1 cut(s) 597
BmeT110I CYCGRG 2 cut(s) 163, 1934
BmgT120I GGNCC 6 cut(s) 428, 552, 597, 757, 1798, 1932
BmiI GGNNCC 3 cut(s) 126, 553, 1467
BmrFI CCNGG 5 cut(s) 164, 165, 706, 755, 1099
BmsI GCATC 5 cut(s) 28, 58, 65, 1154, 1747
BpiI GAAGAC 2 cut(s) 342, 1119
BpuMI CCSGG 3 cut(s) 164, 165, 706
BsaAI YACGTR 1 cut(s) 980
BsaBI GATNNNNATC 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 163, 164, 1775, 1935
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 4 cut(s) 408, 438, 1356, 1386
Bsc4I CCNNNNNNNGG 7 cut(s) 120, 711, 1104, 1781, 2043, 2044, 2070
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 2111
Bse3DI GCAATG 1 cut(s) 1052
Bse8I GATNNNNATC 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 2 cut(s) 755, 1099
BseDI CCNNGG 4 cut(s) 163, 164, 1775, 1935
BseGI GGATG 5 cut(s) 210, 899, 1169, 1237, 2080
BseJI GATNNNNATC 1 cut(s) 316
BseLI CCNNNNNNNGG 7 cut(s) 120, 711, 1104, 1781, 2043, 2044, 2070
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 5 cut(s) 465, 504, 741, 1601, 1874
BseNI ACTGG 1 cut(s) 2111
BseRI GAGGAG 2 cut(s) 236, 1952
BseXI GCAGC 1 cut(s) 1613
BsgI GTGCAG 1 cut(s) 237
BshFI GGCC 6 cut(s) 430, 554, 758, 779, 1799, 1933
BsiHKAI GWGCWC 1 cut(s) 2027
BsiHKCI CYCGRG 2 cut(s) 163, 1934
BsiSI CCGG 4 cut(s) 128, 164, 431, 705
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 7 cut(s) 120, 711, 1104, 1781, 2043, 2044, 2070
BsmFI GGGAC 1 cut(s) 756
BsmI GAATGC 1 cut(s) 1603
BsnI GGCC 6 cut(s) 430, 554, 758, 779, 1799, 1933
BsoBI CYCGRG 2 cut(s) 163, 1934
Bsp1286I GDGCHC 1 cut(s) 2027
Bsp13I TCCGGA 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 1449
Bsp143I GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
Bsp19I CCATGG 1 cut(s) 1775
BspACI CCGC 7 cut(s) 712, 953, 1337, 1396, 1744, 1869, 2064
BspANI GGCC 6 cut(s) 430, 554, 758, 779, 1799, 1933
BspCNI CTCAG 5 cut(s) 466, 503, 740, 1602, 1875
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 126, 553, 1467
BspMAI CTGCAG 1 cut(s) 1691
BspMI ACCTGC 1 cut(s) 2057
BspPI GGATC 7 cut(s) 306, 890, 1098, 1502, 1927, 1983, 2090
BsrBI CCGCTC 1 cut(s) 1744
BsrDI GCAATG 1 cut(s) 1052
BsrFI RCCGGY 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 1449
BsrI ACTGG 1 cut(s) 2111
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 4 cut(s) 163, 164, 1775, 1935
BssMI GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
BssNAI GTATAC 1 cut(s) 1675
BssT1I CCWWGG 1 cut(s) 1775
Bst1107I GTATAC 1 cut(s) 1675
Bst2UI CCWGG 2 cut(s) 755, 1099
Bst4CI ACNGT 5 cut(s) 804, 919, 1122, 1144, 1454
Bst6I CTCTTC 4 cut(s) 12, 462, 528, 557
BstAPI GCANNNNNTGC 1 cut(s) 1173
BstAUI TGTACA 1 cut(s) 1449
BstBAI YACGTR 1 cut(s) 980
BstC8I GCNNGC 1 cut(s) 1873
BstDEI CTNAG 5 cut(s) 474, 490, 727, 1610, 1883
BstDSI CCRYGG 1 cut(s) 1775
BstEII GGTNACC 1 cut(s) 2106
BstENI CCTNNNNNAGG 1 cut(s) 1102
BstF5I GGATG 5 cut(s) 210, 899, 1169, 1237, 2080
BstHHI GCGC 2 cut(s) 480, 1535
BstKTI GATC 9 cut(s) 314, 898, 1093, 1510, 1616, 1696, 1922, 1991, 2085
BstMBI GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
BstMWI GCNNNNNNNGC 5 cut(s) 844, 1173, 1272, 1395, 1766
BstNI CCWGG 2 cut(s) 755, 1099
BstNSI RCATGY 3 cut(s) 609, 1011, 1875
BstPI GGTNACC 1 cut(s) 2106
BstSCI CCNGG 5 cut(s) 162, 163, 704, 753, 1097
BstSFI CTRYAG 1 cut(s) 1687
BstV1I GCAGC 1 cut(s) 1613
BstV2I GAAGAC 2 cut(s) 342, 1119
BstX2I RGATCY 7 cut(s) 311, 895, 1090, 1507, 1613, 1919, 1988
BstXI CCANNNNNNTGG 1 cut(s) 2102
BstYI RGATCY 7 cut(s) 311, 895, 1090, 1507, 1613, 1919, 1988
BstZ17I GTATAC 1 cut(s) 1675
BsuRI GGCC 6 cut(s) 430, 554, 758, 779, 1799, 1933
BtgI CCRYGG 1 cut(s) 1775
BtgZI GCGATG 1 cut(s) 1329
BtsCI GGATG 5 cut(s) 210, 899, 1169, 1237, 2080
BtsI GCAGTG 1 cut(s) 1696
BtsIMutI CAGTG 6 cut(s) 66, 451, 1167, 1255, 1696, 1752
BveI ACCTGC 1 cut(s) 2057
Cac8I GCNNGC 1 cut(s) 1873
CaiI CAGNNNCTG 2 cut(s) 65, 2117
CfoI GCGC 2 cut(s) 480, 1535
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 6 cut(s) 428, 552, 597, 757, 1798, 1932
Cfr9I CCCGGG 1 cut(s) 163
CseI GACGC 2 cut(s) 170, 1442
Csp6I GTAC 5 cut(s) 805, 1319, 1450, 1996, 2114
CviQI GTAC 5 cut(s) 805, 1319, 1450, 1996, 2114
DdeI CTNAG 5 cut(s) 474, 490, 727, 1610, 1883
DpnI GATC 9 cut(s) 313, 897, 1092, 1509, 1615, 1695, 1921, 1990, 2084
DpnII GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
DraI TTTAAA 1 cut(s) 2008
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 4 cut(s) 12, 462, 528, 557
EarI CTCTTC 4 cut(s) 12, 462, 528, 557
Eco130I CCWWGG 1 cut(s) 1775
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 597
Eco57I CTGAAG 4 cut(s) 552, 581, 1614, 1886
Eco88I CYCGRG 2 cut(s) 163, 1934
Eco91I GGTNACC 1 cut(s) 2106
EcoNI CCTNNNNNAGG 1 cut(s) 1102
EcoO109I RGGNCCY 2 cut(s) 552, 1798
EcoO65I GGTNACC 1 cut(s) 2106
EcoRI GAATTC 3 cut(s) 23, 1284, 1551
EcoRII CCWGG 2 cut(s) 753, 1097
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 1775
EcoT22I ATGCAT 1 cut(s) 2044
ErhI CCWWGG 1 cut(s) 1775
FalI AAGNNNNNCTT 4 cut(s) 334, 366, 539, 571
FaqI GGGAC 1 cut(s) 756
FauI CCCGC 1 cut(s) 1876
FauNDI CATATG 2 cut(s) 1391, 1679
FbaI TGATCA 1 cut(s) 1693
FblI GTMKAC 1 cut(s) 1674
Fnu4HI GCNGC 2 cut(s) 1396, 1602
FokI GGATG 5 cut(s) 217, 886, 1176, 1244, 2087
Fsp4HI GCNGC 2 cut(s) 1396, 1602
FspBI CTAG 5 cut(s) 255, 809, 1512, 1802, 1812
GlaI GCGC 2 cut(s) 479, 1534
GluI GCNGC 2 cut(s) 1396, 1602
HaeIII GGCC 6 cut(s) 430, 554, 758, 779, 1799, 1933
HapII CCGG 4 cut(s) 128, 164, 431, 705
HgaI GACGC 2 cut(s) 170, 1442
HhaI GCGC 2 cut(s) 480, 1535
Hin6I GCGC 2 cut(s) 478, 1533
HinP1I GCGC 2 cut(s) 478, 1533
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HindIII AAGCTT 1 cut(s) 1943
HinfI GANTC 8 cut(s) 470, 840, 859, 922, 1001, 1538, 1664, 1892
HpaII CCGG 4 cut(s) 128, 164, 431, 705
HphI GGTGA 5 cut(s) 833, 907, 1091, 1741, 1857
Hpy166II GTNNAC 4 cut(s) 1045, 1135, 1675, 1749
Hpy188III TCNNGA 7 cut(s) 77, 128, 197, 455, 794, 887, 1697
Hpy8I GTNNAC 4 cut(s) 1045, 1135, 1675, 1749
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 9 cut(s) 169, 320, 433, 443, 685, 712, 1456, 1910, 2073
HpyCH4III ACNGT 5 cut(s) 804, 919, 1122, 1144, 1454
HpyCH4IV ACGT 2 cut(s) 979, 1818
HpyF10VI GCNNNNNNNGC 5 cut(s) 844, 1173, 1272, 1395, 1766
HpyF3I CTNAG 5 cut(s) 474, 490, 727, 1610, 1883
HpySE526I ACGT 2 cut(s) 979, 1818
HspAI GCGC 2 cut(s) 478, 1533
Kpn2I TCCGGA 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 1693
Kzo9I GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
LmnI GCTCC 4 cut(s) 6, 178, 1364, 1471
Lsp1109I GCAGC 1 cut(s) 1613
LweI GCATC 5 cut(s) 28, 58, 65, 1154, 1747
MaeI CTAG 5 cut(s) 255, 809, 1512, 1802, 1812
MaeII ACGT 2 cut(s) 979, 1818
MaeIII GTNAC 4 cut(s) 1204, 1525, 2059, 2106
MalI GATC 9 cut(s) 313, 897, 1092, 1509, 1615, 1695, 1921, 1990, 2084
MbiI CCGCTC 1 cut(s) 1744
MboI GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 7 cut(s) 311, 895, 1090, 1507, 1613, 1919, 1988
MhlI GDGCHC 1 cut(s) 2027
MlsI TGGCCA 1 cut(s) 779
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 2 cut(s) 479, 849
MmeI TCCRAC 3 cut(s) 75, 1555, 1973
Mox20I TGGCCA 1 cut(s) 779
Mph1103I ATGCAT 1 cut(s) 2044
MroI TCCGGA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 779
MseI TTAA 3 cut(s) 189, 570, 2007
MslI CAYNNNNRTG 5 cut(s) 89, 1071, 1077, 1870, 2100
Msp20I TGGCCA 1 cut(s) 779
MspI CCGG 4 cut(s) 128, 164, 431, 705
MspR9I CCNGG 5 cut(s) 164, 165, 706, 755, 1099
MunI CAATTG 1 cut(s) 512
Mva1269I GAATGC 1 cut(s) 1603
MvaI CCWGG 2 cut(s) 755, 1099
MwoI GCNNNNNNNGC 5 cut(s) 844, 1173, 1272, 1395, 1766
NciI CCSGG 3 cut(s) 164, 165, 706
NcoI CCATGG 1 cut(s) 1775
NdeI CATATG 2 cut(s) 1391, 1679
NdeII GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
NlaIV GGNNCC 3 cut(s) 126, 553, 1467
NmuCI GTSAC 3 cut(s) 1204, 1525, 2059
NsiI ATGCAT 1 cut(s) 2044
NspI RCATGY 3 cut(s) 609, 1011, 1875
PaeI GCATGC 1 cut(s) 1875
PcsI WCGNNNNNNNCGW 1 cut(s) 1824
PctI GAATGC 1 cut(s) 1603
PfeI GAWTC 6 cut(s) 859, 922, 1001, 1538, 1664, 1892
PflFI GACNNNGTC 1 cut(s) 1969
PflMI CCANNNNNTGG 2 cut(s) 120, 1781
PfoI TCCNGGA 1 cut(s) 704
PkrI GCNGC 2 cut(s) 1397, 1603
PleI GAGTC 2 cut(s) 478, 848
PpsI GAGTC 2 cut(s) 478, 848
Ppu21I YACGTR 1 cut(s) 980
PsiI TTATAA 1 cut(s) 1404
Psp1406I AACGTT 1 cut(s) 1818
Psp6I CCWGG 2 cut(s) 753, 1097
PspEI GGTNACC 1 cut(s) 2106
PspGI CCWGG 2 cut(s) 753, 1097
PspN4I GGNNCC 3 cut(s) 126, 553, 1467
PspPI GGNCC 6 cut(s) 428, 552, 597, 757, 1798, 1932
PstI CTGCAG 1 cut(s) 1691
PstNI CAGNNNCTG 2 cut(s) 65, 2117
PsuI RGATCY 7 cut(s) 311, 895, 1090, 1507, 1613, 1919, 1988
PsyI GACNNNGTC 1 cut(s) 1969
RsaI GTAC 5 cut(s) 806, 1320, 1451, 1997, 2115
RsaNI GTAC 5 cut(s) 805, 1319, 1450, 1996, 2114
RseI CAYNNNNRTG 5 cut(s) 89, 1071, 1077, 1870, 2100
SaqAI TTAA 3 cut(s) 189, 570, 2007
SatI GCNGC 2 cut(s) 1396, 1602
Sau3AI GATC 9 cut(s) 311, 895, 1090, 1507, 1613, 1693, 1919, 1988, 2082
Sau96I GGNCC 6 cut(s) 428, 552, 597, 757, 1798, 1932
SchI GAGTC 2 cut(s) 479, 849
ScrFI CCNGG 5 cut(s) 164, 165, 706, 755, 1099
SduI GDGCHC 1 cut(s) 2027
SfaNI GCATC 5 cut(s) 28, 58, 65, 1154, 1747
SfcI CTRYAG 1 cut(s) 1687
SinI GGWCC 1 cut(s) 597
SmaI CCCGGG 1 cut(s) 165
SmiMI CAYNNNNRTG 5 cut(s) 89, 1071, 1077, 1870, 2100
SphI GCATGC 1 cut(s) 1875
SsiI CCGC 7 cut(s) 712, 953, 1337, 1396, 1744, 1869, 2064
SspMI CTAG 5 cut(s) 255, 809, 1512, 1802, 1812
StyD4I CCNGG 5 cut(s) 162, 163, 704, 753, 1097
StyI CCWWGG 1 cut(s) 1775
TaaI ACNGT 5 cut(s) 804, 919, 1122, 1144, 1454
TaiI ACGT 2 cut(s) 982, 1821
TaqI TCGA 5 cut(s) 454, 1379, 1491, 2030, 2122
TaqII GACCGA 2 cut(s) 336, 585
TatI WGTACW 2 cut(s) 1449, 1995
TauI GCSGC 1 cut(s) 1398
TfiI GAWTC 6 cut(s) 859, 922, 1001, 1538, 1664, 1892
Tru1I TTAA 3 cut(s) 189, 570, 2007
Tru9I TTAA 3 cut(s) 189, 570, 2007
TscAI CASTG 6 cut(s) 66, 451, 1174, 1255, 1696, 1759
TseFI GTSAC 3 cut(s) 1204, 1525, 2059
TseI GCWGC 1 cut(s) 1601
Tsp45I GTSAC 3 cut(s) 1204, 1525, 2059
TspDTI ATGAA 8 cut(s) 387, 435, 489, 797, 888, 1055, 1547, 2004
TspGWI ACGGA 2 cut(s) 1609, 1753
TspMI CCCGGG 1 cut(s) 163
TspRI CASTG 6 cut(s) 66, 451, 1174, 1255, 1696, 1759
Tth111I GACNNNGTC 1 cut(s) 1969
Van91I CCANNNNNTGG 2 cut(s) 120, 1781
VpaK11BI GGWCC 1 cut(s) 597
XagI CCTNNNNNAGG 1 cut(s) 1102
XapI RAATTY 6 cut(s) 23, 374, 388, 785, 1284, 1551
XceI RCATGY 3 cut(s) 609, 1011, 1875
XmaI CCCGGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 1674
XspI CTAG 5 cut(s) 255, 809, 1512, 1802, 1812
Zsp2I ATGCAT 1 cut(s) 2044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.