Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000316.1

Orthogroup ID

OG0009257

Physical Location & Seq

Genomic Coordinates Reverse (-)

15071 .. 16974

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000316.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

atggggagctttagcgaagaggaattcgctttttttgatgcccgcgaggatattgcatcagtgtctgatgcaagtcgtgagagcattgaggtgttggaagcgagttcttcttccatgagttgggttccggatagttttccctatgatgtgtgggttagaagcccggggagtgtgaaggagcgtcgggttaagtttctggattggatggaagttagtgcagaggagattgtgggagagaatatggtggaagtgtctagtgatgtggtgggggaaataggtagagttagagagagtagtggggctgtgttgagatccttatcttttgagggggagttttcttcaagtcggtcttcaatgtcgttctgggctaatgaatttagagatgggaatttgagtgggagaatggagtgtaatggagatgaagtagggccggttgggaaggtcagtgaaggtcgagaagttattgaagagtctgagcgcactttgttctcagtatcttcattatctcgtcaattgagtgcagtcaaagctgaagagattagcagtaagggggcgttactgaagagagttaagaagaagtggttgcatagatttcggtccatgacatgccttgatgataggcaagggattgctgacaggtcagcagagaatgataatgatagaattatgggaataaggtcttatagagtgaaggttcgtcattccgggaagcggttgaaggaactctcagctctttatatgggacaggatatccaggcccatgagggttcaattttggccatgaaatttagtcctgatggacagtacctagcaagtgctggtgaagatgggattgtgcgagtctggcaagtggtggagaatcagaggtgtaatgaacttgacattccagagatagatccatcctgcatatacttcaccgtgaatcatctctctgaactaaatccactatttgcggataaagagaaagtgagtaaagcacgtagcatgacgaaaacatcagattcagcatgtgttatttttcccccaaaagtctttcggattgtggacaaaccattgcatgagtttcatgggcatagtggtgagattttggatctctcctggtcaaggaacaattatctactgtcgtcttctgttgacaaaactgttcgtctatggcaagtgggatgcactgattgcctcaaagtatttgcacatagtaattatgtgacctgtgttcaattcaatcctatggatgataactactttatcagtggttcaatagatggcaaacgatgtacgctagaaaatgctaggaacgttggtgtcgtggaaaataatctacctgaaactctacctttttcttcacccgcatgcttttctctgagccaagaatctctccttcagtctattccgaaaggatctgcgacttggcccgaggagaagcttccaacatcaagcgccttgacaaagtcatctactatgcacagatccgagtacaagttttttaaaacttcatgccagagcacatcgagttcccatgcatggggtctggttattgtgaccgcaggttgggatggaaggatcaaatcattccacaattatgggttaccagtacctgttcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

534

Amino Acids

59.68

Weight (kDa)

5.64

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24320 AT5G24320
fragaria_vesca	FvH4_7g32140 FvH4_7g32140
malus_domestica	MD01G1224100.v1.1 MD07G1294900.v1.1
prunus_persica	Prupe.2G314500_v2.0.a1 Prupe.2G314500_v2.0.a1 Prupe.2G314500_v2.0.a1 Prupe.2G314500_v2.0.a1
pyrus_communis	pycom01g23300 pycom07g26750
rosa_chinensis	RchiOBHm_Chr1g0381741
rosa_laevigata	RLG00000026211
rosa_multiflora	Rmu_ssc0000316.1_g000005
rosa_roxburghii	Rroxscaffold_4G00278480
rosa_rugosa	Rorug01G0430600
rosa_samantha	Rh1AG454000 Rh1BG411300 Rh1CG425600 Rh1DG443100
rosa_wichuraiana	Rw1G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1535
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	5 cut(s)	43, 712, 953, 1347, 1542
AclI	AACGTT	1 cut(s)	1296
AclWI	GGATC	6 cut(s)	306, 890, 1098, 1405, 1461, 1568
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	4 cut(s)	23, 374, 388, 785
AcuI	CTGAAG	3 cut(s)	552, 581, 1364
AfaI	GTAC	4 cut(s)	806, 1276, 1475, 1593
AfiI	CCNNNNNNNGG	6 cut(s)	120, 711, 1104, 1521, 1522, 1548
AgsI	TTSAA	8 cut(s)	342, 354, 467, 718, 771, 1217, 1222, 1257
AjnI	CCWGG	2 cut(s)	753, 1097
AluBI	AGCT	4 cut(s)	9, 530, 731, 1423
AluI	AGCT	4 cut(s)	9, 530, 731, 1423
Alw21I	GWGCWC	1 cut(s)	1505
AlwI	GGATC	6 cut(s)	306, 890, 1098, 1405, 1461, 1568
AlwNI	CAGNNNCTG	2 cut(s)	65, 1595
Ama87I	CYCGRG	2 cut(s)	163, 1412
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	4 cut(s)	428, 756, 777, 1409
ApoI	RAATTY	4 cut(s)	23, 374, 388, 785
AspLEI	GCGC	2 cut(s)	480, 1439
AspS9I	GGNCC	4 cut(s)	428, 597, 757, 1410
AsuC2I	CCSGG	3 cut(s)	164, 165, 706
AsuHPI	GGTGA	4 cut(s)	833, 907, 1091, 1335
AvaI	CYCGRG	2 cut(s)	163, 1412
AvaII	GGWCC	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	779
BbsI	GAAGAC	2 cut(s)	342, 1119
Bbv12I	GWGCWC	1 cut(s)	1505
BccI	CCATC	7 cut(s)	199, 377, 791, 821, 907, 1256, 1547
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 575, 609
BciT130I	CCWGG	2 cut(s)	755, 1099
BcnI	CCSGG	3 cut(s)	164, 165, 706
BfaI	CTAG	4 cut(s)	255, 809, 1280, 1290
BfoI	RGCGCY	1 cut(s)	1440
BfuAI	ACCTGC	1 cut(s)	1535
Bme1390I	CCNGG	5 cut(s)	164, 165, 706, 755, 1099
Bme18I	GGWCC	1 cut(s)	597
BmeT110I	CYCGRG	2 cut(s)	163, 1412
BmgT120I	GGNCC	4 cut(s)	428, 597, 757, 1410
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	5 cut(s)	164, 165, 706, 755, 1099
BmsI	GCATC	4 cut(s)	28, 58, 65, 1154
BpiI	GAAGAC	2 cut(s)	342, 1119
BpuMI	CCSGG	3 cut(s)	164, 165, 706
BsaAI	YACGTR	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	163, 164, 1413
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	6 cut(s)	120, 711, 1104, 1521, 1522, 1548
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	1589
Bse3DI	GCAATG	1 cut(s)	1052
Bse8I	GATNNNNATC	1 cut(s)	316
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	755, 1099
BseDI	CCNNGG	3 cut(s)	163, 164, 1413
BseGI	GGATG	5 cut(s)	210, 899, 1169, 1237, 1558
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	6 cut(s)	120, 711, 1104, 1521, 1522, 1548
BseMI	GCAATG	1 cut(s)	1052
BseMII	CTCAG	4 cut(s)	465, 504, 741, 1352
BseNI	ACTGG	1 cut(s)	1589
BseRI	GAGGAG	2 cut(s)	236, 1430
BsgI	GTGCAG	2 cut(s)	237, 540
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	430, 758, 779, 1411
BsiHKAI	GWGCWC	1 cut(s)	1505
BsiHKCI	CYCGRG	2 cut(s)	163, 1412
BsiSI	CCGG	4 cut(s)	128, 164, 431, 705
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	6 cut(s)	120, 711, 1104, 1521, 1522, 1548
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	4 cut(s)	430, 758, 779, 1411
BsoBI	CYCGRG	2 cut(s)	163, 1412
Bsp1286I	GDGCHC	1 cut(s)	1505
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
BspACI	CCGC	5 cut(s)	43, 712, 953, 1347, 1542
BspANI	GGCC	4 cut(s)	430, 758, 779, 1411
BspCNI	CTCAG	4 cut(s)	466, 503, 740, 1353
BspEI	TCCGGA	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	1535
BspPI	GGATC	6 cut(s)	306, 890, 1098, 1405, 1461, 1568
BsrDI	GCAATG	1 cut(s)	1052
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	1589
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	163, 164, 1413
BssMI	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
Bst2UI	CCWGG	2 cut(s)	755, 1099
Bst4CI	ACNGT	4 cut(s)	804, 919, 1122, 1144
Bst6I	CTCTTC	4 cut(s)	12, 462, 528, 557
BstAPI	GCANNNNNTGC	1 cut(s)	1173
BstBAI	YACGTR	1 cut(s)	980
BstC8I	GCNNGC	2 cut(s)	43, 1351
BstDEI	CTNAG	4 cut(s)	474, 490, 727, 1361
BstEII	GGTNACC	1 cut(s)	1584
BstENI	CCTNNNNNAGG	1 cut(s)	1102
BstF5I	GGATG	5 cut(s)	210, 899, 1169, 1237, 1558
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	1440
BstHHI	GCGC	2 cut(s)	480, 1439
BstKTI	GATC	6 cut(s)	314, 898, 1093, 1400, 1469, 1563
BstMBI	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
BstMWI	GCNNNNNNNGC	3 cut(s)	527, 844, 1173
BstNI	CCWGG	2 cut(s)	755, 1099
BstNSI	RCATGY	3 cut(s)	609, 1011, 1353
BstPI	GGTNACC	1 cut(s)	1584
BstSCI	CCNGG	5 cut(s)	162, 163, 704, 753, 1097
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	2 cut(s)	342, 1119
BstX2I	RGATCY	5 cut(s)	311, 895, 1090, 1397, 1466
BstXI	CCANNNNNNTGG	1 cut(s)	1580
BstYI	RGATCY	5 cut(s)	311, 895, 1090, 1397, 1466
BsuRI	GGCC	4 cut(s)	430, 758, 779, 1411
BtsCI	GGATG	5 cut(s)	210, 899, 1169, 1237, 1558
BtsIMutI	CAGTG	4 cut(s)	66, 451, 1167, 1255
BveI	ACCTGC	1 cut(s)	1535
Cac8I	GCNNGC	2 cut(s)	43, 1351
CaiI	CAGNNNCTG	2 cut(s)	65, 1595
CfoI	GCGC	2 cut(s)	480, 1439
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	4 cut(s)	428, 597, 757, 1410
Cfr9I	CCCGGG	1 cut(s)	163
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	4 cut(s)	805, 1275, 1474, 1592
CviQI	GTAC	4 cut(s)	805, 1275, 1474, 1592
DdeI	CTNAG	4 cut(s)	474, 490, 727, 1361
DpnI	GATC	6 cut(s)	313, 897, 1092, 1399, 1468, 1562
DpnII	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
DraI	TTTAAA	1 cut(s)	1486
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	4 cut(s)	12, 462, 528, 557
EarI	CTCTTC	4 cut(s)	12, 462, 528, 557
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	597
Eco57I	CTGAAG	3 cut(s)	552, 581, 1364
Eco88I	CYCGRG	2 cut(s)	163, 1412
Eco91I	GGTNACC	1 cut(s)	1584
EcoNI	CCTNNNNNAGG	1 cut(s)	1102
EcoO65I	GGTNACC	1 cut(s)	1584
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	753, 1097
EcoRV	GATATC	1 cut(s)	751
EcoT22I	ATGCAT	1 cut(s)	1522
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FaqI	GGGAC	1 cut(s)	756
FauI	CCCGC	2 cut(s)	50, 1354
FokI	GGATG	5 cut(s)	217, 886, 1176, 1244, 1565
FspBI	CTAG	4 cut(s)	255, 809, 1280, 1290
GlaI	GCGC	2 cut(s)	479, 1438
HaeII	RGCGCY	1 cut(s)	1440
HaeIII	GGCC	4 cut(s)	430, 758, 779, 1411
HapII	CCGG	4 cut(s)	128, 164, 431, 705
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	480, 1439
Hin6I	GCGC	2 cut(s)	478, 1437
HinP1I	GCGC	2 cut(s)	478, 1437
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HindIII	AAGCTT	1 cut(s)	1421
HinfI	GANTC	6 cut(s)	470, 840, 859, 922, 1001, 1370
HpaII	CCGG	4 cut(s)	128, 164, 431, 705
HphI	GGTGA	4 cut(s)	833, 907, 1091, 1335
Hpy166II	GTNNAC	2 cut(s)	1045, 1135
Hpy188I	TCNGA	9 cut(s)	67, 475, 864, 934, 1000, 1038, 1362, 1392, 1471
Hpy188III	TCNNGA	6 cut(s)	77, 128, 197, 455, 794, 887
Hpy8I	GTNNAC	2 cut(s)	1045, 1135
Hpy99I	CGWCG	1 cut(s)	186
HpyAV	CCTTC	7 cut(s)	169, 433, 443, 685, 712, 1388, 1551
HpyCH4III	ACNGT	4 cut(s)	804, 919, 1122, 1144
HpyCH4IV	ACGT	2 cut(s)	979, 1296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	527, 844, 1173
HpyF3I	CTNAG	4 cut(s)	474, 490, 727, 1361
HpySE526I	ACGT	2 cut(s)	979, 1296
HspAI	GCGC	2 cut(s)	478, 1437
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
LmnI	GCTCC	2 cut(s)	6, 178
LweI	GCATC	4 cut(s)	28, 58, 65, 1154
MaeI	CTAG	4 cut(s)	255, 809, 1280, 1290
MaeII	ACGT	2 cut(s)	979, 1296
MaeIII	GTNAC	4 cut(s)	555, 1204, 1537, 1584
MalI	GATC	6 cut(s)	313, 897, 1092, 1399, 1468, 1562
MboI	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	5 cut(s)	311, 895, 1090, 1397, 1466
MhlI	GDGCHC	1 cut(s)	1505
MlsI	TGGCCA	1 cut(s)	779
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	2 cut(s)	479, 849
MmeI	TCCRAC	2 cut(s)	75, 1451
MnlI	CCTC	9 cut(s)	13, 40, 82, 214, 319, 757, 858, 1187, 1408
Mox20I	TGGCCA	1 cut(s)	779
Mph1103I	ATGCAT	1 cut(s)	1522
MroI	TCCGGA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	3 cut(s)	189, 570, 1485
MslI	CAYNNNNRTG	4 cut(s)	89, 1077, 1348, 1578
Msp20I	TGGCCA	1 cut(s)	779
MspI	CCGG	4 cut(s)	128, 164, 431, 705
MspR9I	CCNGG	5 cut(s)	164, 165, 706, 755, 1099
MunI	CAATTG	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	755, 1099
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	527, 844, 1173
NciI	CCSGG	3 cut(s)	164, 165, 706
NdeII	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	2 cut(s)	1204, 1537
NsiI	ATGCAT	1 cut(s)	1522
NspI	RCATGY	3 cut(s)	609, 1011, 1353
PaeI	GCATGC	1 cut(s)	1353
PcsI	WCGNNNNNNNCGW	1 cut(s)	1302
PfeI	GAWTC	4 cut(s)	859, 922, 1001, 1370
PflFI	GACNNNGTC	1 cut(s)	1447
PflMI	CCANNNNNTGG	1 cut(s)	120
PfoI	TCCNGGA	1 cut(s)	704
PleI	GAGTC	2 cut(s)	478, 848
PpsI	GAGTC	2 cut(s)	478, 848
Ppu21I	YACGTR	1 cut(s)	980
Psp1406I	AACGTT	1 cut(s)	1296
Psp6I	CCWGG	2 cut(s)	753, 1097
PspEI	GGTNACC	1 cut(s)	1584
PspGI	CCWGG	2 cut(s)	753, 1097
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	4 cut(s)	428, 597, 757, 1410
PstNI	CAGNNNCTG	2 cut(s)	65, 1595
PsuI	RGATCY	5 cut(s)	311, 895, 1090, 1397, 1466
PsyI	GACNNNGTC	1 cut(s)	1447
RsaI	GTAC	4 cut(s)	806, 1276, 1475, 1593
RsaNI	GTAC	4 cut(s)	805, 1275, 1474, 1592
RseI	CAYNNNNRTG	4 cut(s)	89, 1077, 1348, 1578
SaqAI	TTAA	3 cut(s)	189, 570, 1485
Sau3AI	GATC	6 cut(s)	311, 895, 1090, 1397, 1466, 1560
Sau96I	GGNCC	4 cut(s)	428, 597, 757, 1410
SchI	GAGTC	2 cut(s)	479, 849
ScrFI	CCNGG	5 cut(s)	164, 165, 706, 755, 1099
SduI	GDGCHC	1 cut(s)	1505
SfaNI	GCATC	4 cut(s)	28, 58, 65, 1154
SinI	GGWCC	1 cut(s)	597
SmaI	CCCGGG	1 cut(s)	165
SmiMI	CAYNNNNRTG	4 cut(s)	89, 1077, 1348, 1578
SphI	GCATGC	1 cut(s)	1353
SsiI	CCGC	5 cut(s)	43, 712, 953, 1347, 1542
SspMI	CTAG	4 cut(s)	255, 809, 1280, 1290
StyD4I	CCNGG	5 cut(s)	162, 163, 704, 753, 1097
TaaI	ACNGT	4 cut(s)	804, 919, 1122, 1144
TaiI	ACGT	2 cut(s)	982, 1299
TaqI	TCGA	3 cut(s)	454, 1508, 1600
TaqII	GACCGA	2 cut(s)	336, 585
TatI	WGTACW	1 cut(s)	1473
TfiI	GAWTC	4 cut(s)	859, 922, 1001, 1370
Tru1I	TTAA	3 cut(s)	189, 570, 1485
Tru9I	TTAA	3 cut(s)	189, 570, 1485
TscAI	CASTG	4 cut(s)	66, 451, 1174, 1255
TseFI	GTSAC	2 cut(s)	1204, 1537
Tsp45I	GTSAC	2 cut(s)	1204, 1537
TspDTI	ATGAA	7 cut(s)	387, 435, 489, 797, 888, 1055, 1482
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	4 cut(s)	66, 451, 1174, 1255
Tth111I	GACNNNGTC	1 cut(s)	1447
Van91I	CCANNNNNTGG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	597
XagI	CCTNNNNNAGG	1 cut(s)	1102
XapI	RAATTY	4 cut(s)	23, 374, 388, 785
XceI	RCATGY	3 cut(s)	609, 1011, 1353
XmaI	CCCGGG	1 cut(s)	163
XspI	CTAG	4 cut(s)	255, 809, 1280, 1290
Zsp2I	ATGCAT	1 cut(s)	1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.