Rorug01G0430600

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009257
Physical Location & Seq
Forward (+)
52902647 .. 52903947
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0430600.1

Sequence Viewer

Length: 378 bp
ATGGCGTCGACTATCACCACTACCGCTCTGGTTTCTTCCTGCTACACCAAATCGTCAAGCCCCTGTTCGCATCTCAGCAGCACAAGAGCCACAACCTTCGGAGCTCACCGCTTCGCCTACCCTTCCGGCGTAAATTTCAGCCGGAGGCCGAAGACAAGCGCGTTGGTGAGAGCGGAGGTTCAGCCGATTAACCCAGAGATTAGGAAGACTGAGGCGAAGGTTGTGGACTCTGTTGTGGTCACTGAGCTCGCTAAGCCCCTCACTGCATACTGCCGGTGTTGGAGGTCAGGGACTTTCCCCTTGTGCGATGGAAGCCATGTGAAGCATAATAAAGCTACTGGTGACAATGTCGGGCCATTGCTCTTGAAGAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

125

Amino Acids

13.53

Weight (kDa)

9.67

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CDGSH PF09360 78 - 106 3.7e-10 Iron-binding zinc finger CDGSH type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 26, 173
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 161
AciI CCGC 3 cut(s) 24, 109, 173
AcsI RAATTY 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 367
AluBI AGCT 3 cut(s) 104, 247, 335
AluI AGCT 3 cut(s) 104, 247, 335
Alw21I GWGCWC 2 cut(s) 106, 249
AoxI GGCC 2 cut(s) 146, 353
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 133
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 4 cut(s) 7, 98, 178, 353
BanII GRGCYC 2 cut(s) 106, 249
BbsI GAAGAC 2 cut(s) 158, 212
Bbv12I GWGCWC 2 cut(s) 106, 249
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 302
BisI GCNGC 1 cut(s) 79
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 353
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 2 cut(s) 158, 212
Bpu1102I GCTNAGC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 5
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 3 cut(s) 88, 201, 234
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 148, 355
BsiHKAI GWGCWC 2 cut(s) 106, 249
BsiSI CCGG 3 cut(s) 126, 142, 274
BslFI GGGAC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 2 cut(s) 148, 355
Bsp1286I GDGCHC 2 cut(s) 106, 249
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 3 cut(s) 24, 109, 173
BspANI GGCC 2 cut(s) 148, 355
BspCNI CTCAG 3 cut(s) 87, 202, 235
BspFNI CGCG 1 cut(s) 161
BsrBI CCGCTC 2 cut(s) 26, 173
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 4 cut(s) 74, 210, 243, 252
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 253, 312
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 2 cut(s) 158, 212
BsuRI GGCC 2 cut(s) 148, 355
BtgZI GCGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 240, 261
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 353
CviAII CATG 1 cut(s) 317
DdeI CTNAG 4 cut(s) 74, 210, 243, 252
Ecl136II GAGCTC 2 cut(s) 104, 247
Eco24I GRGCYC 2 cut(s) 106, 249
Eco53kI GAGCTC 2 cut(s) 104, 247
EcoICRI GAGCTC 2 cut(s) 104, 247
EcoT38I GRGCYC 2 cut(s) 106, 249
FaeI CATG 1 cut(s) 320
FaiI YATR 3 cut(s) 268, 318, 327
FaqI GGGAC 1 cut(s) 304
FatI CATG 1 cut(s) 316
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 79
FriOI GRGCYC 2 cut(s) 106, 249
Fsp4HI GCNGC 1 cut(s) 79
GlaI GCGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 148, 355
HapII CCGG 3 cut(s) 126, 142, 274
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 227
HpaII CCGG 3 cut(s) 126, 142, 274
HphI GGTGA 4 cut(s) 7, 98, 178, 353
Hpy166II GTNNAC 2 cut(s) 9, 226
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 2 cut(s) 9, 226
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 106, 132, 211, 364
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 312
HpyF3I CTNAG 4 cut(s) 74, 210, 243, 252
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 9 cut(s) 14, 52, 76, 139, 155, 207, 273, 287, 324
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 238, 341
MbiI CCGCTC 2 cut(s) 26, 173
MboII GAAGA 3 cut(s) 27, 163, 217
MhlI GDGCHC 2 cut(s) 106, 249
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 5 cut(s) 138, 169, 205, 269, 276
MseI TTAA 1 cut(s) 189
MspI CCGG 3 cut(s) 126, 142, 274
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 253, 312
NlaIII CATG 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 238, 341
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp124BI GAGCTC 2 cut(s) 106, 249
PspPI GGNCC 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 347
SacI GAGCTC 2 cut(s) 106, 249
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 106, 249
SetI ASST 7 cut(s) 98, 106, 180, 222, 249, 287, 337
SfaNI GCATC 1 cut(s) 79
Sse9I AATT 1 cut(s) 133
SsiI CCGC 3 cut(s) 24, 109, 173
SstI GAGCTC 2 cut(s) 106, 249
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 133
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 247, 268
TseFI GTSAC 2 cut(s) 238, 341
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 2 cut(s) 238, 341
TspRI CASTG 2 cut(s) 247, 268
Tth111I GACNNNGTC 1 cut(s) 347
XapI RAATTY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.