Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGCTTCGACGATATGTGCCTTAAAGAAGAGCTCCTCCGAGGCATCTACAACCATGGCTTTGAGAAGCCCTCAGCTATCCAGCAACGGGCCATCAGACCCATTATTGAGCGCAGGGATGTTATCGCCCAGGCGCAGTCCGGTACCGGAAAGACATCAATGATTGCACTCGCCGCTTGCCAAATGGTTGACACCGCCTCCAGAGAGGTTCAGGCATTGATACTTTCTCCAACGAGGGAATTGGCGGCCCAGACAGAGAAAGTGATATTGGCAATTGGAAATTACCTAAATATTCAAGTACATTCATGCATAGGAGGCAAAAGCTTGGGTGAAGATATTAGAAGGCTAGAGAACGGAGTTCATGTGGTGTCTGGAACTCCCGGTAGAGTCTGTGACATGCTCGACAGGAAAACTCTACGTCCTCGACAAATTAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

146

Amino Acids

16.18

Weight (kDa)

8.78

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	24 - 90	6.8e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	26 - 138	2.2e-29	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	3 cut(s)	174, 195, 245
AfaI	GTAC	2 cut(s)	145, 300
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	4 cut(s)	6, 34, 77, 324
AluI	AGCT	4 cut(s)	6, 34, 77, 324
Alw21I	GWGCWC	1 cut(s)	36
AoxI	GGCC	2 cut(s)	90, 246
AseI	ATTAAT	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	114, 136
AspS9I	GGNCC	2 cut(s)	90, 247
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	381
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	174, 246
BlsI	GCNGC	2 cut(s)	175, 247
Bme1390I	CCNGG	2 cut(s)	131, 381
BmgT120I	GGNCC	2 cut(s)	90, 247
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	131, 381
BmsI	GCATC	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	40, 55, 129
BsaWI	WCCGGW	2 cut(s)	140, 146
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 348, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	40, 55, 129
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	92, 248
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	141, 147, 381
BslI	CCNNNNNNNGG	1 cut(s)	88
BsnI	GGCC	2 cut(s)	92, 248
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	3 cut(s)	174, 195, 245
BspANI	GGCC	2 cut(s)	92, 248
BspCNI	CTCAG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	40, 55, 129
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	114, 136
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 315
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	129, 379
BsuRI	GGCC	2 cut(s)	92, 248
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	2 cut(s)	114, 136
Cfr13I	GGNCC	2 cut(s)	90, 247
Csp6I	GTAC	2 cut(s)	144, 299
CviAII	CATG	4 cut(s)	56, 306, 362, 397
CviJI	RGCY	9 cut(s)	6, 34, 60, 70, 77, 92, 248, 324, 346
CviKI_1	RGCY	9 cut(s)	6, 34, 60, 70, 77, 92, 248, 324, 346
CviQI	GTAC	2 cut(s)	144, 299
DdeI	CTNAG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	4 cut(s)	59, 309, 365, 400
FaiI	YATR	6 cut(s)	17, 57, 307, 311, 363, 398
FatI	CATG	4 cut(s)	55, 305, 361, 396
Fnu4HI	GCNGC	2 cut(s)	174, 246
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	174, 246
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	2 cut(s)	113, 135
GluI	GCNGC	2 cut(s)	174, 246
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	92, 248
HapII	CCGG	3 cut(s)	141, 147, 381
HhaI	GCGC	2 cut(s)	114, 136
Hin1II	CATG	4 cut(s)	59, 309, 365, 400
Hin6I	GCGC	2 cut(s)	112, 134
HinP1I	GCGC	2 cut(s)	112, 134
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	3 cut(s)	141, 147, 381
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	41, 98
Hpy188III	TCNNGA	2 cut(s)	201, 372
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	167, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 315
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	59, 309, 365, 400
HspAI	GCGC	2 cut(s)	112, 134
KpnI	GGTACC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	39
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	392
MboII	GAAGA	2 cut(s)	41, 344
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	5 cut(s)	239, 273, 280, 429, 433
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	35, 47, 82, 199, 208, 228, 308, 432
Mph1103I	ATGCAT	1 cut(s)	311
MseI	TTAA	3 cut(s)	24, 432, 439
MspI	CCGG	3 cut(s)	141, 147, 381
MspR9I	CCNGG	2 cut(s)	131, 381
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	173, 315
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	55
NlaIII	CATG	4 cut(s)	59, 309, 365, 400
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	175, 247
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	90, 247
RsaI	GTAC	2 cut(s)	145, 300
RsaNI	GTAC	2 cut(s)	144, 299
SacI	GAGCTC	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	24, 432, 439
SatI	GCNGC	2 cut(s)	174, 246
Sau96I	GGNCC	2 cut(s)	90, 247
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	131, 381
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	8, 36, 79, 210, 288, 326, 421
SfaNI	GCATC	1 cut(s)	54
Sse9I	AATT	5 cut(s)	239, 273, 280, 429, 433
SsiI	CCGC	3 cut(s)	174, 195, 245
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	129, 379
StyI	CCWWGG	1 cut(s)	55
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	3 cut(s)	9, 402, 424
TasI	AATT	5 cut(s)	239, 273, 280, 429, 433
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	2 cut(s)	176, 248
Tru1I	TTAA	3 cut(s)	24, 432, 439
Tru9I	TTAA	3 cut(s)	24, 432, 439
TseFI	GTSAC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	294, 350
TspGWI	ACGGA	1 cut(s)	369
VspI	ATTAAT	1 cut(s)	432
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.