Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0006069

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATTACCGGCGGCCAGTTTCTTTCCTACCTTGTAAATCTTGGTTTTACAGAGGTCCTCATAGAGGAGAGGTATGGCTACCAATTGACTGTTGCCTGTGCAGGTCCAGGGACATGGCGATGGATGCTTGGAGTATCAGGTATTCCTGCTGTCATTCAGTTTTCTCTCATGCTCTGTCTGCCAGAGTCTCCGCGATGGCTTTTTATGAAGTGTGAAAACTTTGTGATTTTCCCTTGTCCTTCTCCTATCTATATTTATTTGCAGGATGATAAAGAGAAAGCCATTTCTGTGCTCTCCAAAATTTATGAAGTGTCTCGCTTAGATGATGAAATTGAGTACCTTTCTTCTCAAGCAGAGGAAGAGCGCCATAAGAAGGATGATGTTAGCTACTGGCAAGTTTTCAGATCAAAAGAAATCAGACTTGCCTTTATTGTTGGTGCAGGACTTCAGGCATTTCAGCAATTCACTGGTATCAATACGGTTATGTACTACAGCCCAACGATTGTCCAGATGGCTGGCTTCCAATCCAACCAGTTAGCTATCTTGCTGTCCCTTATTGTAGCTGCCATGAATGCCGCTGGGACGGTTCTTGGTATTTACCTCATTGACAAGTGTGGGAGAAGGAAGCTGGTCCTATCGAGCCTATTCGGTGTTATTATATCACTTGTCATCCTCTCGGCTGCATTTTTCTTTGAATCATCTGATTCTTCAAGTGGAATCTATGGGTGGATTGCTGTTTTAGGTTTAGCCCTGTACATTGCTTTCTTTGCACCAGGGATGGGACCTGTGCCATGGACAGTGAACTCTGAGATTTATCCTGAAGCATACAGAGGTATGTGCGGGGGCATGTCAGCTACTGTGAATTGGGTGTCAAATTTCATCGTGGCCCAGAGTTTCCTGTCTGTAGCTGAAGCCGCAGGAACCGGTGCAACCTTCCTGATCCTTGCGGTTGTGGCTGTTATCGCATTTATTTTTGTGCTTGTGTTACTGCCGGAGACAAAAGGGTTGACATTTGAGGAAGTGGAGAGGATTTGGAAGAAAAGGGCTTGGGGCAGTGATTCTAACTCGGAGAGCCTTCTTGAGCAGGCAAGTGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

366

Amino Acids

40.44

Weight (kDa)

4.85

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	1 - 70	7.1e-11	Sugar (and other) transporter
MFS_1	PF07690	37 - 294	1.4e-08	Major Facilitator Superfamily
Sugar_tr	PF00083	76 - 345	1e-68	Sugar (and other) transporter
MFS_1	PF07690	152 - 336	5.9e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43330
fragaria_vesca	FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240
malus_domestica	MD04G1039400.v1.1
prunus_persica	Prupe.1G189900_v2.0.a1 Prupe.1G189900_v2.0.a1
pyrus_communis	pycom04g03190
rosa_chinensis	RchiOBHm_Chr0c40g0503371 RchiOBHm_Chr0c40g0503381 RchiOBHm_Chr4g0407331
rosa_laevigata	RLG00000008733
rosa_multiflora	Rmu_sc0006262.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107480 Rroxscaffold_5G00351870 Rroxscaffold_7G00213980
rosa_rugosa	Rorug04G0078700 Rorug04G0078800
rosa_samantha	Rh4AG143400 Rh4BG141100 Rh4CG149800 Rh4DG137400
rosa_wichuraiana	Rw4G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AccII	CGCG	1 cut(s)	193
AciI	CCGC	6 cut(s)	12, 191, 576, 840, 915, 947
AclWI	GGATC	1 cut(s)	934
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	300, 874
AcuI	CTGAAG	3 cut(s)	431, 840, 930
AfaI	GTAC	3 cut(s)	338, 488, 755
AfiI	CCNNNNNNNGG	3 cut(s)	64, 373, 779
AgeI	ACCGGT	1 cut(s)	923
AgsI	TTSAA	2 cut(s)	695, 711
AjnI	CCWGG	2 cut(s)	106, 772
AluBI	AGCT	6 cut(s)	387, 539, 563, 628, 854, 908
AluI	AGCT	6 cut(s)	387, 539, 563, 628, 854, 908
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	3 cut(s)	192, 318, 989
AlwI	GGATC	1 cut(s)	934
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	2 cut(s)	13, 885
ApeKI	GCWGC	2 cut(s)	563, 680
ApoI	RAATTY	2 cut(s)	300, 874
AsiGI	ACCGGT	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
AvaII	GGWCC	4 cut(s)	55, 104, 631, 782
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	550, 667
BccI	CCATC	4 cut(s)	114, 189, 505, 772
BciT130I	CCWGG	2 cut(s)	108, 774
BcoDI	GTCTC	3 cut(s)	192, 318, 989
BfmI	CTRYAG	2 cut(s)	490, 903
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
BlsI	GCNGC	5 cut(s)	14, 565, 577, 682, 916
Bme1390I	CCNGG	2 cut(s)	108, 774
Bme18I	GGWCC	4 cut(s)	55, 104, 631, 782
BmgT120I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
BmiI	GGNNCC	2 cut(s)	783, 922
BmrFI	CCNGG	2 cut(s)	108, 774
BmsI	GCATC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	333, 1100
BsaJI	CCNNGG	3 cut(s)	107, 773, 791
BsaWI	WCCGGW	1 cut(s)	923
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 373, 779
Bse118I	RCCGGY	2 cut(s)	8, 923
Bse1I	ACTGG	4 cut(s)	16, 395, 472, 532
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	108, 774
BseDI	CCNNGG	3 cut(s)	107, 773, 791
BseGI	GGATG	5 cut(s)	129, 271, 382, 669, 783
BseLI	CCNNNNNNNGG	3 cut(s)	64, 373, 779
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	4 cut(s)	16, 395, 472, 532
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	550, 667
BseYI	CCCAGC	1 cut(s)	578
BsgI	GTGCAG	2 cut(s)	120, 459
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	15, 887
BshTI	ACCGGT	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	3 cut(s)	9, 924, 992
BslFI	GGGAC	4 cut(s)	124, 535, 595, 795
BslI	CCNNNNNNNGG	3 cut(s)	64, 373, 779
BsmAI	GTCTC	3 cut(s)	192, 318, 989
BsmFI	GGGAC	4 cut(s)	124, 535, 595, 795
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	15, 887
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	404, 939
Bsp19I	CCATGG	1 cut(s)	791
BspACI	CCGC	6 cut(s)	12, 191, 576, 840, 915, 947
BspANI	GGCC	2 cut(s)	15, 887
BspCNI	CTCAG	1 cut(s)	799
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	783, 922
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	934
BspQI	GCTCTTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	2 cut(s)	8, 923
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	4 cut(s)	16, 395, 472, 532
BssAI	RCCGGY	2 cut(s)	8, 923
BssECI	CCNNGG	3 cut(s)	107, 773, 791
BssMI	GATC	2 cut(s)	404, 939
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	2 cut(s)	108, 774
Bst4CI	ACNGT	5 cut(s)	91, 481, 586, 799, 859
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	517, 1086
BstDEI	CTNAG	3 cut(s)	319, 807, 1098
BstDSI	CCRYGG	1 cut(s)	791
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	5 cut(s)	129, 271, 382, 669, 783
BstFNI	CGCG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	407, 942
BstMAI	GTCTC	3 cut(s)	192, 318, 989
BstMBI	GATC	2 cut(s)	404, 939
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 178, 572, 767, 914, 953, 962
BstNI	CCWGG	2 cut(s)	108, 774
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	2 cut(s)	106, 772
BstSFI	CTRYAG	2 cut(s)	490, 903
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	550, 667
BstXI	CCANNNNNNTGG	2 cut(s)	114, 515
BsuRI	GGCC	2 cut(s)	15, 887
BtgI	CCRYGG	1 cut(s)	791
BtgZI	GCGATG	2 cut(s)	133, 208
BtsCI	GGATG	5 cut(s)	129, 271, 382, 669, 783
BtsI	GCAGTG	1 cut(s)	1060
BtsIMutI	CAGTG	3 cut(s)	465, 804, 1060
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	517, 1086
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	1 cut(s)	366
Cfr10I	RCCGGY	2 cut(s)	8, 923
Cfr13I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
Csp6I	GTAC	3 cut(s)	337, 487, 754
CspAI	ACCGGT	1 cut(s)	923
CviAII	CATG	5 cut(s)	114, 169, 568, 792, 847
CviQI	GTAC	3 cut(s)	337, 487, 754
DdeI	CTNAG	3 cut(s)	319, 807, 1098
DpnI	GATC	2 cut(s)	406, 941
DpnII	GATC	2 cut(s)	404, 939
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	791
Eco47I	GGWCC	4 cut(s)	55, 104, 631, 782
Eco57I	CTGAAG	3 cut(s)	431, 840, 930
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	2 cut(s)	55, 782
EcoRII	CCWGG	2 cut(s)	106, 772
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	5 cut(s)	117, 172, 571, 795, 850
FalI	AAGNNNNNCTT	1 cut(s)	1081
FaqI	GGGAC	4 cut(s)	124, 535, 595, 795
FatI	CATG	5 cut(s)	113, 168, 567, 791, 846
FauI	CCCGC	1 cut(s)	833
Fnu4HI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
FokI	GGATG	5 cut(s)	136, 278, 389, 656, 790
Fsp4HI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
GsaI	CCCAGC	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	15, 887
HapII	CCGG	3 cut(s)	9, 924, 992
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	117, 172, 571, 795, 850
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	1008
HindII	GTYRAC	1 cut(s)	1008
HinfI	GANTC	6 cut(s)	185, 695, 704, 717, 1058, 1094
HpaII	CCGG	3 cut(s)	9, 924, 992
Hpy166II	GTNNAC	2 cut(s)	802, 1008
Hpy188I	TCNGA	5 cut(s)	404, 419, 703, 808, 1069
Hpy188III	TCNNGA	4 cut(s)	508, 818, 937, 1079
Hpy8I	GTNNAC	2 cut(s)	802, 1008
HpyAV	CCTTC	5 cut(s)	249, 367, 615, 943, 1085
HpyCH4III	ACNGT	5 cut(s)	91, 481, 586, 799, 859
HpyCH4V	TGCA	6 cut(s)	101, 262, 440, 683, 770, 929
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 178, 572, 767, 914, 953, 962
HpyF3I	CTNAG	3 cut(s)	319, 807, 1098
Hsp92II	CATG	5 cut(s)	117, 172, 571, 795, 850
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	404, 939
LguI	GCTCTTC	1 cut(s)	354
Lsp1109I	GCAGC	2 cut(s)	550, 667
LweI	GCATC	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	984
MalI	GATC	2 cut(s)	406, 941
MboI	GATC	2 cut(s)	404, 939
MboII	GAAGA	4 cut(s)	336, 371, 699, 1048
MfeI	CAATTG	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	6 cut(s)	83, 300, 330, 461, 862, 874
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	552
MslI	CAYNNNNRTG	2 cut(s)	118, 287
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	3 cut(s)	9, 924, 992
MspR9I	CCNGG	2 cut(s)	108, 774
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	108, 774
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	7 cut(s)	124, 178, 572, 767, 914, 953, 962
NcoI	CCATGG	1 cut(s)	791
NdeII	GATC	2 cut(s)	404, 939
NlaIII	CATG	5 cut(s)	117, 172, 571, 795, 850
NlaIV	GGNNCC	2 cut(s)	783, 922
NmeAIII	GCCGAG	1 cut(s)	656
NspI	RCATGY	1 cut(s)	850
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	4 cut(s)	695, 704, 717, 1058
PinAI	ACCGGT	1 cut(s)	923
PkrI	GCNGC	5 cut(s)	14, 565, 577, 682, 916
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	2 cut(s)	55, 782
Psp5II	RGGWCCY	2 cut(s)	55, 782
Psp6I	CCWGG	2 cut(s)	106, 772
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	106, 772
PspN4I	GGNNCC	2 cut(s)	783, 922
PspPI	GGNCC	5 cut(s)	55, 104, 631, 782, 886
PspPPI	RGGWCCY	2 cut(s)	55, 782
PstNI	CAGNNNCTG	1 cut(s)	857
RsaI	GTAC	3 cut(s)	338, 488, 755
RsaNI	GTAC	3 cut(s)	337, 487, 754
RseI	CAYNNNNRTG	2 cut(s)	118, 287
SapI	GCTCTTC	1 cut(s)	354
SatI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
Sau3AI	GATC	2 cut(s)	404, 939
Sau96I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	108, 774
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	2 cut(s)	490, 903
SinI	GGWCC	4 cut(s)	55, 104, 631, 782
SmiMI	CAYNNNNRTG	2 cut(s)	118, 287
SmlI	CTYRAG	2 cut(s)	348, 1079
SmoI	CTYRAG	2 cut(s)	348, 1079
Sse9I	AATT	6 cut(s)	83, 300, 330, 461, 862, 874
SsiI	CCGC	6 cut(s)	12, 191, 576, 840, 915, 947
StyD4I	CCNGG	2 cut(s)	106, 772
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	5 cut(s)	91, 481, 586, 799, 859
TaqI	TCGA	1 cut(s)	638
TasI	AATT	6 cut(s)	83, 300, 330, 461, 862, 874
TatI	WGTACW	2 cut(s)	486, 753
TauI	GCSGC	3 cut(s)	15, 578, 917
TfiI	GAWTC	4 cut(s)	695, 704, 717, 1058
TscAI	CASTG	3 cut(s)	472, 804, 1060
TseI	GCWGC	2 cut(s)	563, 680
TspDTI	ATGAA	5 cut(s)	221, 321, 342, 584, 868
TspRI	CASTG	3 cut(s)	472, 804, 1060
VpaK11BI	GGWCC	4 cut(s)	55, 104, 631, 782
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	2 cut(s)	300, 874
XceI	RCATGY	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.