Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006069

Physical Location & Seq

Genomic Coordinates Reverse (-)

12108772 .. 12110982

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCACAAAGGTGAAGGGTCTGTTGAAAGGCCTGAGGTACATTACACAGATATTCGAGGAAAAGGATCAAGAAATACAAATTGGCTTTCCCACAGATGTAAAGCATGTTGCACATATTGGATGGGATGGTCCATCTGCAAATAGTACTCCCACCTGGATGAGCGAGTTCAAATCTCCTCAAGAATCTGCAGGGCAACTTGCTGTTAAAGAATTGTCCGCAAAAGATATAAATAAAACAGGACTTTCTATTGCCCAATCAATGGCACACCTGAACGAAATTCCAAAGTCTACATGTTCCCCATCCAAGAAGAGCTCTGATGGAAAAAGCAAAAAGAGTTCTAGGCGCCATCGCTCAGCGGAAGCCAGTGGAGTGGAGTCCCCAGCACGAGAAGGTAGTAGCCGGAATTCAAGAAGAAGCCGCAACTCTAATTATAGTCTTGGCTCCGAGTCCCCCTCACATGACCCACCTGGGCTCCCAAAACTCCGGAAGAAAAAGGGTTCCACTGATGGAGGATCAACAAAATCATCAAGAAAGCCACGATCTAAAGGCCAGAATTCATTAACTGATATGTCACTTGAAGGTTCTGAGAATGGTAGTCCAATGCACACGGCTTTTGCACGAGAGAAGGGTTCTGAGGTAATCCCAGCAGGAATTCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

221

Amino Acids

23.78

Weight (kDa)

9.9

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43330
fragaria_vesca	FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240
malus_domestica	MD04G1039400.v1.1
prunus_persica	Prupe.1G189900_v2.0.a1 Prupe.1G189900_v2.0.a1
pyrus_communis	pycom04g03190
rosa_chinensis	RchiOBHm_Chr0c40g0503371 RchiOBHm_Chr0c40g0503381 RchiOBHm_Chr4g0407331
rosa_laevigata	RLG00000008733
rosa_multiflora	Rmu_sc0006262.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107480 Rroxscaffold_5G00351870 Rroxscaffold_7G00213980
rosa_rugosa	Rorug04G0078700 Rorug04G0078800
rosa_samantha	Rh4AG143400 Rh4BG141100 Rh4CG149800 Rh4DG137400
rosa_wichuraiana	Rw4G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	486
AciI	CCGC	3 cut(s)	219, 359, 421
AclWI	GGATC	2 cut(s)	75, 523
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	279, 406, 556, 654
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	2 cut(s)	41, 148
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	28, 172, 411, 581
AjnI	CCWGG	2 cut(s)	155, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw21I	GWGCWC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	75, 523
Aor13HI	TCCGGA	1 cut(s)	486
AoxI	GGCC	3 cut(s)	3, 31, 550
ApoI	RAATTY	4 cut(s)	279, 406, 556, 654
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	2 cut(s)	317, 477
BauI	CACGAG	2 cut(s)	387, 621
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	7 cut(s)	117, 122, 142, 310, 314, 357, 503
BceAI	ACGGC	1 cut(s)	627
BciT130I	CCWGG	2 cut(s)	157, 471
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	349
BisI	GCNGC	1 cut(s)	421
BlpI	GCTNAGC	1 cut(s)	355
BlsI	GCNGC	1 cut(s)	422
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	157, 471
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	4 cut(s)	347, 445, 476, 502
BmrFI	CCNGG	2 cut(s)	157, 471
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
Bpu1102I	GCTNAGC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	366
Bse21I	CCTNAGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	157, 471
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	4 cut(s)	128, 133, 165, 302
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	4 cut(s)	26, 369, 579, 627
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	168
BseYI	CCCAGC	2 cut(s)	382, 646
BshFI	GGCC	3 cut(s)	5, 33, 552
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	403, 487
BslFI	GGGAC	2 cut(s)	364, 436
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	364, 436
BsnI	GGCC	3 cut(s)	5, 33, 552
Bsp1286I	GDGCHC	2 cut(s)	317, 477
Bsp13I	TCCGGA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	67, 515, 542
Bsp1720I	GCTNAGC	1 cut(s)	355
BspACI	CCGC	3 cut(s)	219, 359, 421
BspANI	GGCC	3 cut(s)	5, 33, 552
BspCNI	CTCAG	4 cut(s)	27, 368, 580, 628
BspEI	TCCGGA	1 cut(s)	486
BspLI	GGNNCC	4 cut(s)	347, 445, 476, 502
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	75, 523
BspQI	GCTCTTC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	67, 515, 542
BssNI	GRCGYC	1 cut(s)	346
BssSI	CACGAG	2 cut(s)	387, 621
Bst2BI	CACGAG	2 cut(s)	387, 621
Bst2UI	CCWGG	2 cut(s)	157, 471
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	346
BstDEI	CTNAG	4 cut(s)	35, 355, 588, 636
BstF5I	GGATG	4 cut(s)	128, 133, 165, 302
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	70, 518, 545
BstMBI	GATC	3 cut(s)	67, 515, 542
BstNI	CCWGG	2 cut(s)	157, 471
BstNSI	RCATGY	2 cut(s)	110, 297
BstSCI	CCNGG	2 cut(s)	155, 469
BstSFI	CTRYAG	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	5, 33, 552
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	4 cut(s)	128, 133, 165, 302
BtsIMutI	CAGTG	2 cut(s)	373, 504
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	40, 147
CviAII	CATG	3 cut(s)	107, 294, 461
CviQI	GTAC	2 cut(s)	40, 147
DdeI	CTNAG	4 cut(s)	35, 355, 588, 636
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	3 cut(s)	69, 517, 544
DpnII	GATC	3 cut(s)	67, 515, 542
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	2 cut(s)	317, 477
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	315
EcoRI	GAATTC	3 cut(s)	406, 556, 654
EcoRII	CCWGG	2 cut(s)	155, 469
EcoT38I	GRGCYC	2 cut(s)	317, 477
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
FaeI	CATG	3 cut(s)	110, 297, 464
FaiI	YATR	8 cut(s)	108, 117, 230, 295, 435, 462, 572, 660
FaqI	GGGAC	2 cut(s)	364, 436
FatI	CATG	3 cut(s)	106, 293, 460
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	4 cut(s)	135, 140, 172, 289
FriOI	GRGCYC	2 cut(s)	317, 477
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	421
GsaI	CCCAGC	2 cut(s)	386, 650
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	5, 33, 552
HapII	CCGG	2 cut(s)	403, 487
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	3 cut(s)	110, 297, 464
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	185, 377, 449
HpaII	CCGG	2 cut(s)	403, 487
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	319, 448, 589, 637
Hpy188III	TCNNGA	5 cut(s)	71, 182, 411, 487, 531
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	4 cut(s)	10, 386, 575, 622
HpyCH4V	TGCA	5 cut(s)	113, 140, 191, 607, 620
HpyF3I	CTNAG	4 cut(s)	35, 355, 588, 636
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	3 cut(s)	110, 297, 464
HspAI	GCGC	1 cut(s)	346
KasI	GGCGCC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	67, 515, 542
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	2 cut(s)	449, 480
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	3 cut(s)	69, 517, 544
MboI	GATC	3 cut(s)	67, 515, 542
MboII	GAAGA	3 cut(s)	322, 426, 502
MhlI	GDGCHC	2 cut(s)	317, 477
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	81, 212, 279, 406, 430, 556, 654
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	346
MlyI	GAGTC	2 cut(s)	386, 458
MnlI	CCTC	6 cut(s)	30, 52, 189, 466, 506, 631
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	207, 563, 664
MslI	CAYNNNNRTG	2 cut(s)	11, 158
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	2 cut(s)	403, 487
MspR9I	CCNGG	2 cut(s)	157, 471
MvaI	CCWGG	2 cut(s)	157, 471
NarI	GGCGCC	1 cut(s)	346
NdeII	GATC	3 cut(s)	67, 515, 542
NlaIII	CATG	3 cut(s)	110, 297, 464
NlaIV	GGNNCC	4 cut(s)	347, 445, 476, 502
NmuCI	GTSAC	1 cut(s)	573
NspI	RCATGY	2 cut(s)	110, 297
OliI	CACNNNNGTG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	33
PciI	ACATGT	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	2 cut(s)	385, 457
PluTI	GGCGCC	1 cut(s)	349
PpsI	GAGTC	2 cut(s)	385, 457
PscI	ACATGT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	155, 469
PspFI	CCCAGC	2 cut(s)	382, 646
PspGI	CCWGG	2 cut(s)	155, 469
PspN4I	GGNNCC	4 cut(s)	347, 445, 476, 502
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	41, 148
RsaNI	GTAC	2 cut(s)	40, 147
RseI	CAYNNNNRTG	2 cut(s)	11, 158
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	207, 563, 664
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	3 cut(s)	67, 515, 542
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	2 cut(s)	386, 458
ScrFI	CCNGG	2 cut(s)	157, 471
SduI	GDGCHC	2 cut(s)	317, 477
SetI	ASST	9 cut(s)	15, 41, 158, 273, 317, 397, 472, 586, 642
SfcI	CTRYAG	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	347
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	11, 158
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	7 cut(s)	81, 212, 279, 406, 430, 556, 654
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	3 cut(s)	219, 359, 421
SspDI	GGCGCC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	317
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	155, 469
TaqI	TCGA	1 cut(s)	57
TasI	AATT	7 cut(s)	81, 212, 279, 406, 430, 556, 654
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	207, 563, 664
Tru9I	TTAA	3 cut(s)	207, 563, 664
TscAI	CASTG	2 cut(s)	373, 511
TseFI	GTSAC	1 cut(s)	573
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	549, 647
TspRI	CASTG	2 cut(s)	373, 511
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	4 cut(s)	279, 406, 556, 654
XceI	RCATGY	2 cut(s)	110, 297
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.