Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0006069

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACGTTGGGTTCGGCTTCGTCGTTGCCAGGGAGCTCAGGGTACTTGGATTTGCACCCAGACAGGAAAATGTTCTATTTCAGGAATCCTTATATTCTCGGTTTGACTGTCGTTGCTGGGATTGGTGGACTCCTCTTCGGCTACGACACAGGTGTTATATCGGGTGCTCTTCTGTATATCAAAGATGATTTTGAGGTTGTCAGGAATAGTAGCTTCCTCCAGGAAACAATTGTAAGCATGGCCTTGGTTGGTGCTATGATTGGAGCAGCTGCAGGTGGTTGGATTAATGATGCTTATGGACGTAAGAAGGCTACTCTTCTTGCTGATGTTGTATTTGCTCTTGGGGCAATTGTCATGGCTGCTGCCCCGATCCATATGTTCTTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

129

Amino Acids

13.64

Weight (kDa)

6.01

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43330
fragaria_vesca	FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240
malus_domestica	MD04G1039400.v1.1
prunus_persica	Prupe.1G189900_v2.0.a1 Prupe.1G189900_v2.0.a1
pyrus_communis	pycom04g03190
rosa_chinensis	RchiOBHm_Chr0c40g0503371 RchiOBHm_Chr0c40g0503381 RchiOBHm_Chr4g0407331
rosa_laevigata	RLG00000008733
rosa_multiflora	Rmu_sc0006262.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107480 Rroxscaffold_5G00351870 Rroxscaffold_7G00213980
rosa_rugosa	Rorug04G0078700 Rorug04G0078800
rosa_samantha	Rh4AG143400 Rh4BG141100 Rh4CG149800 Rh4DG137400
rosa_wichuraiana	Rw4G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	364
AfaI	GTAC	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	28, 219
AluBI	AGCT	3 cut(s)	36, 213, 269
AluI	AGCT	3 cut(s)	36, 213, 269
Alw21I	GWGCWC	2 cut(s)	38, 169
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	266, 269, 359, 362
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	38, 169
BbvI	GCAGC	4 cut(s)	256, 278, 346, 349
BciT130I	CCWGG	2 cut(s)	30, 221
BfmI	CTRYAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	267, 270, 360, 363
BlsI	GCNGC	4 cut(s)	268, 271, 361, 364
Bme1390I	CCNGG	2 cut(s)	30, 221
BmrFI	CCNGG	2 cut(s)	30, 221
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	29, 243
BseBI	CCWGG	2 cut(s)	30, 221
BseDI	CCNNGG	2 cut(s)	29, 243
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	256, 278, 346, 349
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	38, 169
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	38, 169
Bsp143I	GATC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	29, 243
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	30, 221
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	3 cut(s)	140, 174, 321
BstDEI	CTNAG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	30, 221
BstSCI	CCNGG	2 cut(s)	28, 219
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	256, 278, 346, 349
BsuRI	GGCC	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	238, 355
CviJI	RGCY	8 cut(s)	17, 36, 141, 213, 242, 269, 311, 359
CviKI_1	RGCY	8 cut(s)	17, 36, 141, 213, 242, 269, 311, 359
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eam1104I	CTCTTC	3 cut(s)	140, 174, 321
EarI	CTCTTC	3 cut(s)	140, 174, 321
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	28, 219
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	241, 358
FaiI	YATR	9 cut(s)	93, 158, 177, 239, 257, 297, 356, 375, 377
FatI	CATG	2 cut(s)	237, 354
FauNDI	CATATG	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	267, 270, 360, 363
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	267, 270, 360, 363
GluI	GCNGC	4 cut(s)	267, 270, 360, 363
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	242
Hin1II	CATG	2 cut(s)	241, 358
HinfI	GANTC	2 cut(s)	85, 129
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	82, 202
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	5, 301
HpyCH4V	TGCA	2 cut(s)	55, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	2 cut(s)	5, 301
Hsp92II	CATG	2 cut(s)	241, 358
Kzo9I	GATC	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	33, 263
Lsp1109I	GCAGC	4 cut(s)	256, 278, 346, 349
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	2 cut(s)	5, 301
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	3 cut(s)	127, 161, 308
MfeI	CAATTG	2 cut(s)	228, 348
MhlI	GDGCHC	2 cut(s)	38, 169
MluCI	AATT	2 cut(s)	228, 348
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	3 cut(s)	143, 187, 227
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	30, 221
MunI	CAATTG	2 cut(s)	228, 348
MvaI	CCWGG	2 cut(s)	30, 221
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	2 cut(s)	241, 358
PaqCI	CACCTGC	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	85
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	4 cut(s)	268, 271, 361, 364
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	28, 219
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	28, 219
PstI	CTGCAG	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	267, 270, 360, 363
Sau3AI	GATC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	30, 221
SduI	GDGCHC	2 cut(s)	38, 169
SetI	ASST	8 cut(s)	8, 38, 154, 198, 215, 271, 277, 304
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	270
Sse9I	AATT	2 cut(s)	228, 348
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	28, 219
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	8, 304
TasI	AATT	2 cut(s)	228, 348
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	4 cut(s)	266, 269, 359, 362
VspI	ATTAAT	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.