Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000910

Physical Location & Seq

Genomic Coordinates Reverse (-)

12111679 .. 12114341

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0078800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGGGGACTGTGTTTGCTCCTGCTCTGGAAGGAATGAAGAGTGTGAAATCAGCAGAAGGGGAAATGCAGACCAAGCCTTTCTTGGAAGTCTGCAAGCAGATTTTGCCTGTTATAGAGAAGTTTGGAGCTGCTATGACTCTTGTTAAATCGGATGTTGGTGGTAATATAACGAGATTGGAGACTAAATATTCTTCCAATCCTTCGGAATTCGACCTATTGTACAGTTTGGTACGGGTTGAGGTTGAAGCCAAGACAGCAAAAGCATCATCCAGCTGCACCAATGGTCTGCTATGGTTGACAAGAGCAATGGACTTCTTGTTGGAGTTGTTTCGGAACTTACTGGAACATCAAGATTGGACAATGTCTCAGGCTTGTTCAGATTCCTATGGCAAGACCCTGAAACAATGGCATGGATGGCTTGCTAGTTCAAGTTTCAGTATTGCCATGAAGCTTGCTCCTGACAGGAAGAAGTTCATGGATGTGATAAGTGGCAATGGTGATATCATGGATGATATAGAGAAATTTTGCACTACCTTTGCGCCCCTGCTTCAAGAGAATCACAAGTTTTTGGCTAGTGTTGGCCTGGATGATTTGAAGGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

202

Amino Acids

22.44

Weight (kDa)

5.46

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	24 - 164	2.2e-47	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23770 AT1G23780 AT1G70360 AT1G70360
fragaria_vesca	FvH4_2g03310 FvH4_4g04631 FvH4_5g20811
malus_domestica	MD05G1106300.v1.1 MD10G1110300.v1.1 MD10G1110400.v1.1 MD10G1110600.v1.1 MD10G1110700.v1.1 MD10G1175800.v1.1
prunus_persica	Prupe.8G150500_v2.0.a1
pyrus_communis	pycom05g10350 pycom10g09580 pycom10g09590 pycom16g16890
rosa_chinensis	RchiOBHm_Chr4g0395411 RchiOBHm_Chr4g0407371 RchiOBHm_Chr4g0407381 RchiOBHm_Chr4g0407391 RchiOBHm_Chr6g0248431
rosa_laevigata	RLG00000015154
rosa_multiflora	Rmu_sc0002553.1_g000006 Rmu_sc0003402.1_g000015 Rmu_sc0003402.1_g000017 Rmu_sc0003402.1_g000018 Rmu_sc0004598.1_g000002 Rmu_sc0010817.1_g000012 Rmu_sc0014661.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351910 Rroxscaffold_5G00351990 Rroxscaffold_5G00352000 Rroxscaffold_6G00426810
rosa_rugosa	Rorug03G0357500 Rorug04G0078800 Rorug04G0078900 Rorug04G0079100 Rorug04G0081200 Rorug05G0531100
rosa_samantha	Rh4AG143800 Rh4AG143900 Rh4BG058200 Rh4BG141600 Rh4BG141900 Rh4BG142000 Rh4CG063700 Rh4CG150100 Rh4CG150200 Rh4CG150400 Rh4DG054800 Rh4DG137700 Rh4DG137900 Rh4DG138100 Rh6AG046800 Rh6BG043500 Rh6CG040200 Rh6DG036700
rosa_wichuraiana	Rw0G003310 Rw0G007650 Rw4G011690 Rw4G011710 Rw4G011720 Rw6G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	209, 524
AfaI	GTAC	2 cut(s)	224, 234
AgsI	TTSAA	4 cut(s)	248, 432, 554, 598
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	131, 276, 454
AluI	AGCT	3 cut(s)	131, 276, 454
Alw26I	GTCTC	2 cut(s)	176, 372
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	2 cut(s)	131, 276
ApoI	RAATTY	2 cut(s)	209, 524
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	544
AsuHPI	GGTGA	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	118, 263
BccI	CCATC	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	176, 372
BfaI	CTAG	2 cut(s)	426, 576
BisI	GCNGC	2 cut(s)	132, 277
BlsI	GCNGC	2 cut(s)	133, 278
Bme1390I	CCNGG	1 cut(s)	587
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	2 cut(s)	315, 502
BseBI	CCWGG	1 cut(s)	587
BseGI	GGATG	6 cut(s)	160, 269, 422, 487, 517, 595
BseMI	GCAATG	2 cut(s)	315, 502
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	118, 263
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	176, 372
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	222
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	315, 502
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	2 cut(s)	13, 227
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	98, 423, 456
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	6 cut(s)	160, 269, 422, 487, 517, 595
BstHHI	GCGC	1 cut(s)	544
BstMAI	GTCTC	2 cut(s)	176, 372
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 106, 257, 418
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	118, 263
BsuRI	GGCC	1 cut(s)	585
BtsCI	GGATG	6 cut(s)	160, 269, 422, 487, 517, 595
Cac8I	GCNNGC	3 cut(s)	98, 423, 456
CfoI	GCGC	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	223, 233
CviAII	CATG	4 cut(s)	413, 448, 478, 508
CviQI	GTAC	2 cut(s)	223, 233
DdeI	CTNAG	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	505
FaeI	CATG	4 cut(s)	416, 451, 481, 511
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	412, 447, 477, 507
Fnu4HI	GCNGC	2 cut(s)	132, 277
FokI	GGATG	6 cut(s)	167, 256, 429, 494, 524, 602
Fsp4HI	GCNGC	2 cut(s)	132, 277
FspBI	CTAG	2 cut(s)	426, 576
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	132, 277
HaeIII	GGCC	1 cut(s)	585
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	4 cut(s)	416, 451, 481, 511
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	3 cut(s)	139, 383, 559
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	4 cut(s)	154, 208, 336, 382
Hpy188III	TCNNGA	4 cut(s)	29, 353, 461, 554
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	4 cut(s)	26, 53, 213, 592
HpyCH4III	ACNGT	2 cut(s)	13, 227
HpyCH4V	TGCA	4 cut(s)	70, 96, 279, 531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 106, 257, 418
HpyF3I	CTNAG	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	416, 451, 481, 511
HspAI	GCGC	1 cut(s)	542
LmnI	GCTCC	3 cut(s)	25, 128, 463
Lsp1109I	GCAGC	2 cut(s)	118, 263
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	2 cut(s)	426, 576
MboII	GAAGA	3 cut(s)	52, 186, 481
MluCI	AATT	2 cut(s)	209, 524
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	4 cut(s)	76, 106, 257, 418
NlaIII	CATG	4 cut(s)	416, 451, 481, 511
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	383, 559
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	133, 278
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PsyI	GACNNNGTC	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	276
RsaI	GTAC	2 cut(s)	224, 234
RsaNI	GTAC	2 cut(s)	223, 233
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	132, 277
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	587
SetI	ASST	6 cut(s)	133, 219, 246, 278, 456, 539
SfaNI	GCATC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	209, 524
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	2 cut(s)	426, 576
StyD4I	CCNGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	13, 227
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	209, 524
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	383, 559
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	2 cut(s)	131, 276
TspDTI	ATGAA	4 cut(s)	53, 464, 466, 594
Tth111I	GACNNNGTC	1 cut(s)	364
XapI	RAATTY	2 cut(s)	209, 524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	426, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.