MD10G1110600.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000910
Physical Location & Seq
Forward (+)
18196107 .. 18196865
759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1110600.v1.1.491

Sequence Viewer

Length: 759 bp
ATGGAAAATAATAATGAGCCTGCTGCTGGTAGTGGTGGGAGAACTTGGGAGAAGTACTCAGTGCCGTTTTTCTTGAAGAGGGTACTAAGGGAGGAGTTGGGAGAAGACCGTAGCAATCACAAGCTCTTGGAGATTTCTGTACACGCTGTGCTCTTAGACTCCGGTTTCGTTCGGTTGGATTTAGTTCAGGGTATGCGGGCCAATCAGGTTTCGTACACGGTGCCTCAGATTCTGCAACATCAGGGCAATAACGGTAATAGGGTTGAAGCAGTTGTATTGGAGTTTCGTAAATGGCGTCAATTCATGAATGTTTATGGGTCATTCGCCAGTGGTGGTTCTACGTGTTATCGGCTACGTATGGACAACAAAAGATTTGCTCCGGTGATTGAATCTGTTTGGGAAAACAGAAATATGAATGAGAGAGATGAGTTAGTTTTAGAAAAGGAAGTTTTGGAGTTTTGGAGGATTGTGAAAGATGGGATCGCAATGCCATTGCTGATTGATCTTTGCACGAAGGTGGGTTTGAGCGCCCCATCGAGCCTCATGTGCCTTCCAATGAAGATTCTAGAATCACTGCGTGGTGTTGCTATTGCCAAAGTGGGTCGTGTTTGTAAGGAGCTGCGAAATCTTGCTAGTAATGATGAGTTGTGGAAGAAGAAGTATGCTGAGGAGTTTGGGGACTGTAAGGGAGGAGAAGGAACAATGATTAGCTGGAAGTGCAGATTTGCTACTAGCGTGAAAATTAGAAAACAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

253

Amino Acids

28.72

Weight (kDa)

9.11

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 295
AdeI CACNNNGTG 2 cut(s) 148, 578
AfaI GTAC 4 cut(s) 56, 84, 141, 215
AfiI CCNNNNNNNGG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 3 cut(s) 76, 266, 389
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 3 cut(s) 124, 619, 711
AluI AGCT 3 cut(s) 124, 619, 711
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 488
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 2 cut(s) 198, 753
ApeKI GCWGC 2 cut(s) 23, 619
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 394
BanI GGYRCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 2 cut(s) 10, 606
BccI CCATC 2 cut(s) 470, 541
BceAI ACGGC 1 cut(s) 49
BfaI CTAG 3 cut(s) 566, 633, 732
BfoI RGCGCY 1 cut(s) 531
BisI GCNGC 2 cut(s) 24, 620
BlsI GCNGC 2 cut(s) 25, 621
BmcAI AGTACT 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu10I CCTNAGC 1 cut(s) 666
BsaAI YACGTR 2 cut(s) 342, 356
BsaHI GRCGYC 1 cut(s) 295
BsaWI WCCGGW 2 cut(s) 161, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 2 cut(s) 491, 492
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 2 cut(s) 491, 492
BseMII CTCAG 3 cut(s) 72, 239, 657
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 3 cut(s) 107, 683, 705
BseXI GCAGC 2 cut(s) 10, 606
BsgI GTGCAG 1 cut(s) 739
BshFI GGCC 2 cut(s) 200, 755
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 162, 380
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 2 cut(s) 200, 755
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 480, 502
BspACI CCGC 1 cut(s) 196
BspANI GGCC 2 cut(s) 200, 755
BspCNI CTCAG 3 cut(s) 71, 238, 658
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 491, 492
BsrGI TGTACA 1 cut(s) 139
BsrI ACTGG 1 cut(s) 327
BssMI GATC 2 cut(s) 480, 502
BssNI GRCGYC 1 cut(s) 295
Bst4CI ACNGT 4 cut(s) 110, 220, 254, 683
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 295
BstAUI TGTACA 1 cut(s) 139
BstBAI YACGTR 2 cut(s) 342, 356
BstC8I GCNNGC 2 cut(s) 21, 198
BstDEI CTNAG 5 cut(s) 58, 86, 154, 225, 666
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 2 cut(s) 483, 505
BstMBI GATC 2 cut(s) 480, 502
BstMWI GCNNNNNNNGC 2 cut(s) 546, 717
BstSNI TACGTA 1 cut(s) 356
BstV1I GCAGC 2 cut(s) 10, 606
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 200, 755
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 3 cut(s) 66, 334, 572
Cac8I GCNNGC 2 cut(s) 21, 198
CaiI CAGNNNCTG 1 cut(s) 232
CciI TCATGA 1 cut(s) 303
CfoI GCGC 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 198
CseI GACGC 1 cut(s) 284
Csp6I GTAC 4 cut(s) 55, 83, 140, 214
CviAII CATG 2 cut(s) 304, 544
CviJI RGCY 8 cut(s) 19, 124, 200, 352, 540, 619, 711, 755
CviKI_1 RGCY 8 cut(s) 19, 124, 200, 352, 540, 619, 711, 755
CviQI GTAC 4 cut(s) 55, 83, 140, 214
DdeI CTNAG 5 cut(s) 58, 86, 154, 225, 666
DpnI GATC 2 cut(s) 482, 504
DpnII GATC 2 cut(s) 480, 502
DraIII CACNNNGTG 2 cut(s) 148, 578
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco105I TACGTA 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 755
FaeI CATG 2 cut(s) 307, 547
FaiI YATR 7 cut(s) 194, 305, 315, 359, 413, 545, 663
FaqI GGGAC 1 cut(s) 692
FatI CATG 2 cut(s) 303, 543
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 24, 620
Fsp4HI GCNGC 2 cut(s) 24, 620
FspBI CTAG 3 cut(s) 566, 633, 732
GlaI GCGC 1 cut(s) 529
GluI GCNGC 2 cut(s) 24, 620
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 2 cut(s) 200, 755
HapII CCGG 2 cut(s) 162, 380
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 530
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 2 cut(s) 307, 547
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HinfI GANTC 5 cut(s) 158, 229, 389, 562, 569
HpaII CCGG 2 cut(s) 162, 380
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 142, 216
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 3 cut(s) 73, 304, 566
Hpy8I GTNNAC 2 cut(s) 142, 216
HpyAV CCTTC 3 cut(s) 508, 560, 689
HpyCH4III ACNGT 4 cut(s) 110, 220, 254, 683
HpyCH4IV ACGT 2 cut(s) 341, 355
HpyCH4V TGCA 3 cut(s) 235, 510, 720
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 717
HpyF3I CTNAG 5 cut(s) 58, 86, 154, 225, 666
HpySE526I ACGT 2 cut(s) 341, 355
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 2 cut(s) 307, 547
HspAI GCGC 1 cut(s) 528
Kzo9I GATC 2 cut(s) 480, 502
LmnI GCTCC 2 cut(s) 382, 616
Lsp1109I GCAGC 2 cut(s) 10, 606
MaeI CTAG 3 cut(s) 566, 633, 732
MaeII ACGT 2 cut(s) 341, 355
MalI GATC 2 cut(s) 482, 504
MboI GATC 2 cut(s) 480, 502
MboII GAAGA 5 cut(s) 88, 116, 571, 664, 667
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 299, 741
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 7 cut(s) 72, 85, 234, 456, 551, 661, 683
MslI CAYNNNNRTG 1 cut(s) 515
MspI CCGG 2 cut(s) 162, 380
MwoI GCNNNNNNNGC 2 cut(s) 546, 717
NdeII GATC 2 cut(s) 480, 502
NlaIII CATG 2 cut(s) 307, 547
NlaIV GGNNCC 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 515
PagI TCATGA 1 cut(s) 303
PceI AGGCCT 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PfeI GAWTC 4 cut(s) 229, 389, 562, 569
PkrI GCNGC 2 cut(s) 25, 621
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 2 cut(s) 342, 356
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 232
RsaI GTAC 4 cut(s) 56, 84, 141, 215
RsaNI GTAC 4 cut(s) 55, 83, 140, 214
RseI CAYNNNNRTG 1 cut(s) 515
SatI GCNGC 2 cut(s) 24, 620
Sau3AI GATC 2 cut(s) 480, 502
Sau96I GGNCC 1 cut(s) 198
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 126, 210, 344, 358, 519, 621, 713
SmiMI CAYNNNNRTG 1 cut(s) 515
SnaBI TACGTA 1 cut(s) 356
Sse9I AATT 2 cut(s) 299, 741
SseBI AGGCCT 1 cut(s) 755
SsiI CCGC 1 cut(s) 196
SspMI CTAG 3 cut(s) 566, 633, 732
StuI AGGCCT 1 cut(s) 755
TaaI ACNGT 4 cut(s) 110, 220, 254, 683
TaiI ACGT 2 cut(s) 344, 358
TaqI TCGA 1 cut(s) 536
TasI AATT 2 cut(s) 299, 741
TatI WGTACW 2 cut(s) 54, 139
TfiI GAWTC 4 cut(s) 229, 389, 562, 569
TscAI CASTG 3 cut(s) 66, 334, 579
TseI GCWGC 2 cut(s) 23, 619
TspDTI ATGAA 4 cut(s) 292, 320, 428, 572
TspRI CASTG 3 cut(s) 66, 334, 579
XbaI TCTAGA 1 cut(s) 565
XspI CTAG 3 cut(s) 566, 633, 732
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.