Rw0G007650

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00276
OG0000910
Physical Location & Seq
Forward (+)
754 .. 1400
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007650.1

Sequence Viewer

Length: 618 bp
TCAGTTTCCGGTAAATCGGTTTTCTATACTTTGCCTGAGATTCTACAAAATGATGGTGAGGTTATTGAAGGGATTGTGATGGTGTTTCCCAGTTTGAGTCCATTCTTTGCAGCCTACCGTGACGGTTACCCTGTATGGTTGGATGAGAAGAAGTTTGCGCCTGCCATGATCGATTTTGTTTGGGGAAATAATAGATTTGATGATTGTCATGTGAATGGGGGATTACTTGAGAGACAAGTTATGGAGATTAGAAATATTGTGAAGAATGAAATTGCATTGCCATTACTAATAGATCTTTGTGCAGTCGCCGGTTTGCGTGCTCCACCGTGCCTTATGGGCCTTCCTGCGGAGCTTGGAGCAAAGATTTTGAAGTCGCTGCCTGGTGAGGATATTGCTAGAGTGTCGTGTGTCTGTAAGGAGCTGCGAAATCTGGCTAATGATGATGAGTTGTGGAAGCAAAAGTTTGCCGAGGAGTTTGCCTTAAGTGGGAATGAAGCTGGAGACCGCAAGTCTTGGAAGTCCTGGTTTGTTGTAAACTGGAAGAACAAGAAGGAAACAAATAAAGAGAAGGGAAAAATTATAGTGGGATATTGGTGGCGCCGGAAAAAATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

205

Amino Acids

23.34

Weight (kDa)

7.53

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 113 - 152 4.5e-08 F-box domain
F-box-like PF12937 114 - 155 3.8e-11 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 597
AciI CCGC 2 cut(s) 347, 505
AcyI GRCGYC 1 cut(s) 598
AfiI CCNNNNNNNGG 2 cut(s) 346, 486
AflII CTTAAG 1 cut(s) 481
AgsI TTSAA 2 cut(s) 68, 370
AhdI GACNNNNNGTC 1 cut(s) 508
AjnI CCWGG 2 cut(s) 379, 521
AluBI AGCT 3 cut(s) 352, 421, 497
AluI AGCT 3 cut(s) 352, 421, 497
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 2 cut(s) 226, 495
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 3 cut(s) 110, 376, 421
AspLEI GCGC 2 cut(s) 160, 600
AspS9I GGNCC 1 cut(s) 337
AsuHPI GGTGA 2 cut(s) 68, 395
BanI GGYRCC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 122, 363, 408
BccI CCATC 2 cut(s) 47, 73
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 381, 523
BcoDI GTCTC 2 cut(s) 226, 495
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 601
BfrI CTTAAG 1 cut(s) 481
BglI GCCNNNNNGGC 1 cut(s) 336
BglII AGATCT 1 cut(s) 292
BisI GCNGC 3 cut(s) 111, 377, 422
BlsI GCNGC 3 cut(s) 112, 378, 423
Bme1390I CCNGG 2 cut(s) 381, 523
BmeRI GACNNNNNGTC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 599
BmrFI CCNGG 2 cut(s) 381, 523
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 248
Bsa29I ATCGAT 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 486
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 90, 542
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 381, 523
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 346, 486
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 90, 542
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 3 cut(s) 122, 363, 408
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 3 cut(s) 9, 309, 601
BslI CCNNNNNNNGG 2 cut(s) 346, 486
BsmAI GTCTC 2 cut(s) 226, 495
BsnI GGCC 1 cut(s) 339
Bso31I GGTCTC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 168, 292
BspACI CCGC 2 cut(s) 347, 505
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 28
BspDI ATCGAT 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 597
BspTI CTTAAG 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 2 cut(s) 90, 542
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 2 cut(s) 168, 292
BssNI GRCGYC 1 cut(s) 598
Bst2UI CCWGG 2 cut(s) 381, 523
Bst4CI ACNGT 3 cut(s) 119, 125, 327
BstACI GRCGYC 1 cut(s) 598
BstAFI CTTAAG 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 162, 318
BstDEI CTNAG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 601
BstHHI GCGC 2 cut(s) 160, 600
BstKTI GATC 2 cut(s) 171, 295
BstMAI GTCTC 2 cut(s) 226, 495
BstMBI GATC 2 cut(s) 168, 292
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 2 cut(s) 381, 523
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 379, 521
BstV1I GCAGC 3 cut(s) 122, 363, 408
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 1 cut(s) 339
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 162, 318
CfoI GCGC 2 cut(s) 160, 600
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 337
ClaI ATCGAT 1 cut(s) 171
CviAII CATG 2 cut(s) 166, 209
CviJI RGCY 6 cut(s) 113, 339, 352, 421, 434, 497
CviKI_1 RGCY 6 cut(s) 113, 339, 352, 421, 434, 497
DdeI CTNAG 1 cut(s) 36
DinI GGCGCC 1 cut(s) 599
DpnI GATC 2 cut(s) 170, 294
DpnII GATC 2 cut(s) 168, 292
DriI GACNNNNNGTC 1 cut(s) 508
Eam1105I GACNNNNNGTC 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 495
Eco91I GGTNACC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 379, 521
EgeI GGCGCC 1 cut(s) 599
EheI GGCGCC 1 cut(s) 599
FaeI CATG 2 cut(s) 169, 212
FaiI YATR 8 cut(s) 27, 136, 167, 210, 242, 335, 581, 612
FatI CATG 2 cut(s) 165, 208
Fnu4HI GCNGC 3 cut(s) 111, 377, 422
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 111, 377, 422
FspBI CTAG 1 cut(s) 396
GlaI GCGC 2 cut(s) 159, 599
GluI GCNGC 3 cut(s) 111, 377, 422
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 601
HaeIII GGCC 1 cut(s) 339
HapII CCGG 3 cut(s) 9, 309, 601
HhaI GCGC 2 cut(s) 160, 600
Hin1I GRCGYC 1 cut(s) 598
Hin1II CATG 2 cut(s) 169, 212
Hin6I GCGC 2 cut(s) 158, 598
HinP1I GCGC 2 cut(s) 158, 598
HinfI GANTC 2 cut(s) 40, 97
HpaII CCGG 3 cut(s) 9, 309, 601
HphI GGTGA 2 cut(s) 68, 395
Hpy166II GTNNAC 1 cut(s) 535
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 4 cut(s) 62, 350, 544, 562
HpyCH4III ACNGT 3 cut(s) 119, 125, 327
HpyCH4V TGCA 3 cut(s) 110, 275, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 598
Hsp92II CATG 2 cut(s) 169, 212
HspAI GCGC 2 cut(s) 158, 598
KasI GGCGCC 1 cut(s) 597
Kzo9I GATC 2 cut(s) 168, 292
LmnI GCTCC 4 cut(s) 325, 349, 356, 418
Lsp1109I GCAGC 3 cut(s) 122, 363, 408
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 119, 125
MalI GATC 2 cut(s) 170, 294
MboI GATC 2 cut(s) 168, 292
MboII GAAGA 3 cut(s) 160, 274, 553
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 2 cut(s) 270, 576
Mly113I GGCGCC 1 cut(s) 598
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 3 cut(s) 52, 379, 463
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 481
MspI CCGG 3 cut(s) 9, 309, 601
MspR9I CCNGG 2 cut(s) 381, 523
MvaI CCWGG 2 cut(s) 381, 523
MwoI GCNNNNNNNGC 1 cut(s) 336
NarI GGCGCC 1 cut(s) 598
NdeII GATC 2 cut(s) 168, 292
NlaIII CATG 2 cut(s) 169, 212
NlaIV GGNNCC 1 cut(s) 599
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 112, 378, 423
PleI GAGTC 1 cut(s) 105
PluTI GGCGCC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 379, 521
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 2 cut(s) 379, 521
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 1 cut(s) 337
PsuI RGATCY 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 3 cut(s) 111, 377, 422
Sau3AI GATC 2 cut(s) 168, 292
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 381, 523
SduI GDGCHC 1 cut(s) 322
SetI ASST 4 cut(s) 63, 354, 423, 499
SfoI GGCGCC 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 227, 481
SmoI CTYRAG 2 cut(s) 227, 481
Sse9I AATT 2 cut(s) 270, 576
SsiI CCGC 2 cut(s) 347, 505
SspDI GGCGCC 1 cut(s) 597
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 379, 521
TaaI ACNGT 3 cut(s) 119, 125, 327
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 270, 576
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 3 cut(s) 110, 376, 421
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 282, 507
Vha464I CTTAAG 1 cut(s) 481
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.