Rorug03G0357500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000910
Physical Location & Seq
Reverse (-)
44444625 .. 44448518
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0357500.1

Sequence Viewer

Length: 633 bp
ATGGCTGTTATTAAGCTAGCAACTCTTTTGAGTGAGAACATGAGAGAGTTGTCTCATATATGGGCACCTCCAATATATAGAAGATTGCTTAGCTCTGATAAGAGAGACAGGGATATGTCAGAAAGGTGTCTACTGAAGATTAGATCCACAATCATACCTTCTCCAATAGATCTCTCCAAGGTTGCCTGTGAAGGTCTTATTAATGCTCTTATTCACCCTCCAATGTTATTACCGTGTGCGACAAATGCTGCAGAAGAGGATGATGGCATCATGTTGAGTAACTGCGATGTATCTGTCCGCATGTCTTGCTTGAACACATGGTGTTATCTATTACCTAGACTTGATACCTCTCTGAATGATTCTTCAATGATTAACCGGGTAGTAGACCCTATGTTTGAAGCAGCTTTTCAACTTGATCCTAATGGTTCTGATTTTGGCAAGGACAAATCATTGAAGTTCCTGCAGCTCTGGATCTATCGAAGGCCTGGAGGAGTACTAGATATTTGTGTGTACATGTTTGAACTCTACAGGCCAAAATTCTCATGGAAAAACTTCAGGAGCATACAAATGGTGAAAACAGAAGAACAAATGGAATATAAGTACGGCGAGGCTTGCTTTCGTTTCTGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

210

Amino Acids

24.3

Weight (kDa)

6.72

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AccI GTMKAC 2 cut(s) 130, 384
AciI CCGC 1 cut(s) 298
AclWI GGATC 3 cut(s) 138, 410, 479
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 2 cut(s) 155, 538
AdeI CACNNNGTG 1 cut(s) 321
AfaI GTAC 3 cut(s) 495, 512, 602
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 6 cut(s) 313, 366, 398, 410, 454, 521
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 4 cut(s) 16, 93, 404, 466
AluI AGCT 4 cut(s) 16, 93, 404, 466
Alw26I GTCTC 2 cut(s) 57, 99
AlwI GGATC 3 cut(s) 138, 410, 479
AoxI GGCC 2 cut(s) 482, 530
ApeKI GCWGC 3 cut(s) 248, 401, 463
ApoI RAATTY 1 cut(s) 536
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 551
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 206, 583
AsuNHI GCTAGC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 64
BbvI GCAGC 3 cut(s) 235, 413, 475
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 619
BciT130I CCWGG 1 cut(s) 486
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 57, 99
BfaI CTAG 4 cut(s) 17, 336, 497, 631
BfmI CTRYAG 3 cut(s) 249, 461, 526
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 249, 402, 464
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 3 cut(s) 250, 403, 465
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 2 cut(s) 377, 486
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 377, 486
BmsI GCATC 1 cut(s) 276
BmtI GCTAGC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 3 cut(s) 235, 413, 475
BshFI GGCC 2 cut(s) 484, 532
BshNI GGYRCC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 376
BsmAI GTCTC 2 cut(s) 57, 99
BsnI GGCC 2 cut(s) 484, 532
Bsp1286I GDGCHC 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 4 cut(s) 143, 169, 415, 471
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 1 cut(s) 298
BspANI GGCC 2 cut(s) 484, 532
BspLI GGNNCC 1 cut(s) 66
BspMAI CTGCAG 2 cut(s) 253, 465
BspOI GCTAGC 1 cut(s) 20
BspPI GGATC 3 cut(s) 138, 410, 479
BspT107I GGYRCC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 4 cut(s) 143, 169, 415, 471
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 18, 613
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 4 cut(s) 146, 172, 418, 474
BstMAI GTCTC 2 cut(s) 57, 99
BstMBI GATC 4 cut(s) 143, 169, 415, 471
BstMWI GCNNNNNNNGC 3 cut(s) 245, 306, 612
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 2 cut(s) 304, 517
BstSCI CCNGG 2 cut(s) 375, 484
BstSFI CTRYAG 3 cut(s) 249, 461, 526
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 235, 413, 475
BstX2I RGATCY 3 cut(s) 143, 169, 471
BstYI RGATCY 3 cut(s) 143, 169, 471
BsuRI GGCC 2 cut(s) 484, 532
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 18, 613
Csp6I GTAC 3 cut(s) 494, 511, 601
CviAII CATG 6 cut(s) 40, 271, 301, 318, 514, 543
CviJI RGCY 8 cut(s) 5, 16, 93, 404, 466, 484, 532, 611
CviKI_1 RGCY 8 cut(s) 5, 16, 93, 404, 466, 484, 532, 611
CviQI GTAC 3 cut(s) 494, 511, 601
DdeI CTNAG 1 cut(s) 89
DpnI GATC 4 cut(s) 145, 171, 417, 473
DpnII GATC 4 cut(s) 143, 169, 415, 471
DraIII CACNNNGTG 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 155, 538
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 6 cut(s) 43, 274, 304, 321, 517, 546
FatI CATG 6 cut(s) 39, 270, 300, 317, 513, 542
FblI GTMKAC 2 cut(s) 130, 384
Fnu4HI GCNGC 3 cut(s) 249, 402, 464
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 249, 402, 464
FspBI CTAG 4 cut(s) 17, 336, 497, 631
GluI GCNGC 3 cut(s) 249, 402, 464
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 484, 532
HapII CCGG 1 cut(s) 376
Hin1II CATG 6 cut(s) 43, 274, 304, 321, 517, 546
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 376
HphI GGTGA 2 cut(s) 206, 583
Hpy166II GTNNAC 3 cut(s) 131, 385, 511
Hpy188I TCNGA 4 cut(s) 97, 121, 354, 430
Hpy188III TCNNGA 2 cut(s) 469, 556
Hpy8I GTNNAC 3 cut(s) 131, 385, 511
HpyAV CCTTC 3 cut(s) 168, 185, 474
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 251, 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 306, 612
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 6 cut(s) 43, 274, 304, 321, 517, 546
Kzo9I GATC 4 cut(s) 143, 169, 415, 471
LmnI GCTCC 1 cut(s) 558
LpnPI CCDG 9 cut(s) 94, 199, 389, 454, 471, 473, 498, 514, 541
Lsp1109I GCAGC 3 cut(s) 235, 413, 475
LweI GCATC 1 cut(s) 276
MaeI CTAG 4 cut(s) 17, 336, 497, 631
MaeIII GTNAC 1 cut(s) 278
MalI GATC 4 cut(s) 145, 171, 417, 473
MboI GATC 4 cut(s) 143, 169, 415, 471
MboII GAAGA 5 cut(s) 93, 148, 266, 354, 593
MflI RGATCY 3 cut(s) 143, 169, 471
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 1 cut(s) 536
MnlI CCTC 6 cut(s) 78, 228, 250, 358, 482, 601
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 3 cut(s) 12, 201, 372
MslI CAYNNNNRTG 1 cut(s) 566
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 377, 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 245, 306, 612
NciI CCSGG 1 cut(s) 377
NdeII GATC 4 cut(s) 143, 169, 415, 471
NheI GCTAGC 1 cut(s) 16
NlaIII CATG 6 cut(s) 43, 274, 304, 321, 517, 546
NlaIV GGNNCC 1 cut(s) 66
NspI RCATGY 2 cut(s) 304, 517
PceI AGGCCT 1 cut(s) 484
PciI ACATGT 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 3 cut(s) 250, 403, 465
PscI ACATGT 1 cut(s) 513
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 66
PstI CTGCAG 2 cut(s) 253, 465
PsuI RGATCY 3 cut(s) 143, 169, 471
RsaI GTAC 3 cut(s) 495, 512, 602
RsaNI GTAC 3 cut(s) 494, 511, 601
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 3 cut(s) 12, 201, 372
SatI GCNGC 3 cut(s) 249, 402, 464
Sau3AI GATC 4 cut(s) 143, 169, 415, 471
ScaI AGTACT 1 cut(s) 495
ScrFI CCNGG 2 cut(s) 377, 486
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 3 cut(s) 249, 461, 526
SmiMI CAYNNNNRTG 1 cut(s) 566
Sse9I AATT 1 cut(s) 536
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 1 cut(s) 298
SspMI CTAG 4 cut(s) 17, 336, 497, 631
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 375, 484
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 478
TasI AATT 1 cut(s) 536
TatI WGTACW 2 cut(s) 493, 510
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 12, 201, 372
Tru9I TTAA 3 cut(s) 12, 201, 372
TseI GCWGC 3 cut(s) 248, 401, 463
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 1 cut(s) 536
XceI RCATGY 2 cut(s) 304, 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XmiI GTMKAC 2 cut(s) 130, 384
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 4 cut(s) 17, 336, 497, 631
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.