Rw0G003310

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00113
OG0000910
Physical Location & Seq
Reverse (-)
30649 .. 31440
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003310.1

Sequence Viewer

Length: 792 bp
ATGGAAATCGATGATATTGGTTCTGATAACAGGCACTCGGTGCACGACTCCTTGAGGAGAGTTCTGAGGGAGAAACTGACTGATAACCACCCTGGTAATAAGCTCAAGATATTGAAATTAGTGGTACATGTGGCTCTCTTAGAGTCCGGTTTTGTGCGGTTCAACCCAGGTTCAGTTTCCGGTAAATCGGTTTTCTATACTTTGCCTGAGATTCTACAAAATGATGGTGAGGTTATTGAAGGGATTGTGATGGTGTTTCCCAGTTTGAGTCCATTCTTTGCAGCCTACCGTGACGGTTACCCTGTATGGTTGGATGAGAAGAAGTTTGCGCCTGCCATGATCGATTTTGTTTGGGGAAATAATAGATTTGATGATTGTCATGTGAATGGGGGATTACTTGAGAGACAAGTTATGGAGATTATTAGAAATATTGTGAAGAATGAAATTGCATTGCCATTACTAATAGATCTTTGTGCAGTCGCCGGTTTGCGTGCTCCACCGTGCCTTATGGGCCTTCCTGCGGAGCTTGGAGCAAAGATTTTGAAGTCGCTGCCTGGTGAGGATATTGCTAGAGTGTCGTGTGTCTGTAAGGAGCTGCGAAATCTGGCTAATGATGATGAGTTGTGGAAGCAAAAGTTTGCCGAGGAGTTTGCCTTAAGTGGGAATGAAGCTGGAGACCGCAAGTCTTGGAAGTCCTGGTTTGTTGTAAACTGGAAGAACAAGAAGGAAACAAATAAAGAGAAGGGAAAAATTATAGTGGGATATTGGTGGCGCCGGAAAAAATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

263

Amino Acids

29.93

Weight (kDa)

8.19

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 171 - 210 6.7e-08 F-box domain
F-box-like PF12937 172 - 213 5.7e-11 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 771
AciI CCGC 3 cut(s) 157, 521, 679
AcyI GRCGYC 1 cut(s) 772
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 520, 660
AflII CTTAAG 1 cut(s) 655
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 4 cut(s) 115, 163, 239, 544
AhdI GACNNNNNGTC 1 cut(s) 682
AjnI CCWGG 4 cut(s) 91, 166, 553, 695
AluBI AGCT 4 cut(s) 103, 526, 595, 671
AluI AGCT 4 cut(s) 103, 526, 595, 671
Alw21I GWGCWC 2 cut(s) 45, 496
Alw26I GTCTC 2 cut(s) 397, 669
Alw44I GTGCAC 1 cut(s) 41
AoxI GGCC 1 cut(s) 511
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 281, 550, 595
AspLEI GCGC 2 cut(s) 331, 774
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 239, 569
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 771
Bbv12I GWGCWC 2 cut(s) 45, 496
BbvI GCAGC 3 cut(s) 293, 537, 582
BccI CCATC 2 cut(s) 218, 244
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BciT130I CCWGG 4 cut(s) 93, 168, 555, 697
BcoDI GTCTC 2 cut(s) 397, 669
BfaI CTAG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 775
BfrI CTTAAG 1 cut(s) 655
BglI GCCNNNNNGGC 1 cut(s) 510
BglII AGATCT 1 cut(s) 466
BisI GCNGC 3 cut(s) 282, 551, 596
BlsI GCNGC 3 cut(s) 283, 552, 597
Bme1390I CCNGG 4 cut(s) 93, 168, 555, 697
BmeRI GACNNNNNGTC 1 cut(s) 682
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 773
BmrFI CCNGG 4 cut(s) 93, 168, 555, 697
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 693
BpuEI CTTGAG 3 cut(s) 73, 89, 419
Bsa29I ATCGAT 2 cut(s) 9, 342
BsaHI GRCGYC 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 669
BsaJI CCNNGG 3 cut(s) 91, 166, 642
BsaWI WCCGGW 2 cut(s) 146, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 520, 660
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 261, 716
Bse3DI GCAATG 1 cut(s) 449
BseBI CCWGG 4 cut(s) 93, 168, 555, 697
BseCI ATCGAT 2 cut(s) 9, 342
BseDI CCNNGG 3 cut(s) 91, 166, 642
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 520, 660
BseMI GCAATG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 56, 198
BseNI ACTGG 2 cut(s) 261, 716
BseRI GAGGAG 2 cut(s) 70, 659
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 3 cut(s) 293, 537, 582
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 1 cut(s) 513
BshNI GGYRCC 1 cut(s) 771
BshVI ATCGAT 2 cut(s) 9, 342
BsiHKAI GWGCWC 2 cut(s) 45, 496
BsiSI CCGG 4 cut(s) 147, 180, 483, 775
BslI CCNNNNNNNGG 2 cut(s) 520, 660
BsmAI GTCTC 2 cut(s) 397, 669
BsnI GGCC 1 cut(s) 513
Bso31I GGTCTC 1 cut(s) 669
Bsp1286I GDGCHC 2 cut(s) 45, 496
Bsp143I GATC 2 cut(s) 339, 466
BspACI CCGC 3 cut(s) 157, 521, 679
BspANI GGCC 1 cut(s) 513
BspCNI CTCAG 2 cut(s) 57, 199
BspDI ATCGAT 2 cut(s) 9, 342
BspLI GGNNCC 1 cut(s) 773
BspT107I GGYRCC 1 cut(s) 771
BspTI CTTAAG 1 cut(s) 655
BspTNI GGTCTC 1 cut(s) 669
BsrDI GCAATG 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 2 cut(s) 261, 716
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 3 cut(s) 91, 166, 642
BssMI GATC 2 cut(s) 339, 466
BssNI GRCGYC 1 cut(s) 772
Bst2UI CCWGG 4 cut(s) 93, 168, 555, 697
Bst4CI ACNGT 3 cut(s) 290, 296, 501
BstACI GRCGYC 1 cut(s) 772
BstAFI CTTAAG 1 cut(s) 655
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 333, 492
BstDEI CTNAG 3 cut(s) 65, 139, 207
BstEII GGTNACC 1 cut(s) 296
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 775
BstHHI GCGC 2 cut(s) 331, 774
BstKTI GATC 2 cut(s) 342, 469
BstMAI GTCTC 2 cut(s) 397, 669
BstMBI GATC 2 cut(s) 339, 466
BstMWI GCNNNNNNNGC 2 cut(s) 40, 510
BstNI CCWGG 4 cut(s) 93, 168, 555, 697
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 296
BstSCI CCNGG 4 cut(s) 91, 166, 553, 695
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 293, 537, 582
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 2 cut(s) 9, 342
BsuRI GGCC 1 cut(s) 513
BsuTUI ATCGAT 2 cut(s) 9, 342
BtsCI GGATG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 333, 492
CfoI GCGC 2 cut(s) 331, 774
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 511
ClaI ATCGAT 2 cut(s) 9, 342
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 128, 337, 380
CviJI RGCY 8 cut(s) 103, 134, 284, 513, 526, 595, 608, 671
CviKI_1 RGCY 8 cut(s) 103, 134, 284, 513, 526, 595, 608, 671
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 3 cut(s) 65, 139, 207
DinI GGCGCC 1 cut(s) 773
DpnI GATC 2 cut(s) 341, 468
DpnII GATC 2 cut(s) 339, 466
DraIII CACNNNGTG 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 682
Eam1105I GACNNNNNGTC 1 cut(s) 682
Eco31I GGTCTC 1 cut(s) 669
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
EcoRII CCWGG 4 cut(s) 91, 166, 553, 695
EgeI GGCGCC 1 cut(s) 773
EheI GGCGCC 1 cut(s) 773
FaeI CATG 3 cut(s) 131, 340, 383
FaiI YATR 9 cut(s) 129, 198, 307, 338, 381, 413, 509, 755, 786
FatI CATG 3 cut(s) 127, 336, 379
Fnu4HI GCNGC 3 cut(s) 282, 551, 596
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 282, 551, 596
FspBI CTAG 1 cut(s) 570
GlaI GCGC 2 cut(s) 330, 773
GluI GCNGC 3 cut(s) 282, 551, 596
GsuI CTGGAG 1 cut(s) 693
HaeII RGCGCY 1 cut(s) 775
HaeIII GGCC 1 cut(s) 513
HapII CCGG 4 cut(s) 147, 180, 483, 775
HhaI GCGC 2 cut(s) 331, 774
Hin1I GRCGYC 1 cut(s) 772
Hin1II CATG 3 cut(s) 131, 340, 383
Hin6I GCGC 2 cut(s) 329, 772
HinP1I GCGC 2 cut(s) 329, 772
HinfI GANTC 4 cut(s) 47, 143, 211, 268
HpaII CCGG 4 cut(s) 147, 180, 483, 775
HphI GGTGA 2 cut(s) 239, 569
Hpy166II GTNNAC 2 cut(s) 43, 709
Hpy188I TCNGA 2 cut(s) 25, 66
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 2 cut(s) 43, 709
HpyAV CCTTC 4 cut(s) 233, 524, 718, 736
HpyCH4III ACNGT 3 cut(s) 290, 296, 501
HpyCH4V TGCA 4 cut(s) 43, 281, 449, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 510
HpyF3I CTNAG 3 cut(s) 65, 139, 207
Hsp92I GRCGYC 1 cut(s) 772
Hsp92II CATG 3 cut(s) 131, 340, 383
HspAI GCGC 2 cut(s) 329, 772
KasI GGCGCC 1 cut(s) 771
Kzo9I GATC 2 cut(s) 339, 466
LmnI GCTCC 4 cut(s) 499, 523, 530, 592
Lsp1109I GCAGC 3 cut(s) 293, 537, 582
MaeI CTAG 1 cut(s) 570
MaeIII GTNAC 2 cut(s) 290, 296
MalI GATC 2 cut(s) 341, 468
MboI GATC 2 cut(s) 339, 466
MboII GAAGA 3 cut(s) 331, 448, 727
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 2 cut(s) 45, 496
MluCI AATT 3 cut(s) 116, 444, 750
Mly113I GGCGCC 1 cut(s) 772
MlyI GAGTC 3 cut(s) 41, 152, 277
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 5 cut(s) 48, 60, 223, 553, 637
MseI TTAA 1 cut(s) 656
MslI CAYNNNNRTG 1 cut(s) 384
MspCI CTTAAG 1 cut(s) 655
MspI CCGG 4 cut(s) 147, 180, 483, 775
MspR9I CCNGG 4 cut(s) 93, 168, 555, 697
MvaI CCWGG 4 cut(s) 93, 168, 555, 697
MwoI GCNNNNNNNGC 2 cut(s) 40, 510
NarI GGCGCC 1 cut(s) 772
NdeII GATC 2 cut(s) 339, 466
NlaIII CATG 3 cut(s) 131, 340, 383
NlaIV GGNNCC 1 cut(s) 773
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 131
PciI ACATGT 1 cut(s) 127
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 3 cut(s) 283, 552, 597
PleI GAGTC 3 cut(s) 41, 151, 276
PluTI GGCGCC 1 cut(s) 775
PpsI GAGTC 3 cut(s) 41, 151, 276
PscI ACATGT 1 cut(s) 127
Psp6I CCWGG 4 cut(s) 91, 166, 553, 695
PspEI GGTNACC 1 cut(s) 296
PspGI CCWGG 4 cut(s) 91, 166, 553, 695
PspN4I GGNNCC 1 cut(s) 773
PspPI GGNCC 1 cut(s) 511
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 656
SatI GCNGC 3 cut(s) 282, 551, 596
Sau3AI GATC 2 cut(s) 339, 466
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 3 cut(s) 41, 152, 277
ScrFI CCNGG 4 cut(s) 93, 168, 555, 697
SduI GDGCHC 2 cut(s) 45, 496
SetI ASST 6 cut(s) 105, 172, 234, 528, 597, 673
SfoI GGCGCC 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 4 cut(s) 52, 104, 398, 655
SmoI CTYRAG 4 cut(s) 52, 104, 398, 655
Sse9I AATT 3 cut(s) 116, 444, 750
SsiI CCGC 3 cut(s) 157, 521, 679
SspDI GGCGCC 1 cut(s) 771
SspI AATATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 4 cut(s) 91, 166, 553, 695
TaaI ACNGT 3 cut(s) 290, 296, 501
TaqI TCGA 2 cut(s) 9, 342
TasI AATT 3 cut(s) 116, 444, 750
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 3 cut(s) 281, 550, 595
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 456, 681
Vha464I CTTAAG 1 cut(s) 655
VneI GTGCAC 1 cut(s) 41
XceI RCATGY 1 cut(s) 131
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.