FvH4_5g20811

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000910
Physical Location & Seq
Forward (+)
12367930 .. 12369501
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20811.t1

Sequence Viewer

Length: 984 bp
ATGGGTGAAGAAGACGAAGAGAGGGCTCGTGATCCTTTGAATGAAGGGGGCAAGTACAAGTACTCCCTATCTTTATCGTTGAGGAGGGTACTCAAAGAGGAGTTGGCCCCCCAAGATCTTCACAGAAACCATAAAAACAACAAGCTTCTAGTCGCTGCCGTGCATGCTGTGCTCTTAGACTCCGGTTTTGTCCGCTTCAGTTCTGCTACGTCCGTACATGATGCCCTCTCAGAGTTCGGTTTCTCCGAGTTCGGTTCCGTTTCGGGTATGTCACATTCCTACACTTTGCCTCAGATTCTTGCCCAACAAGATAATAAAGATTGTAGTAGTAATCTGAAGACGCAAGGGTTCGTGTTGAAGTTTGAGTATTTAGGTCAGTACTTTTCGCCTCACCAGAAAAGAACAAGACATGTGGCTCCTCGCATCGTGAGAGTTTCTGGGTCCTTGATCAGTTCTGGTTCTAGGTTTGGGGAGAAGGACAAGGAGGTTTGTTTGGAAGTGGATGAGAATAAGTTTGCGCCGGCGTTTGAGTTCTTTTGGGGAAACAGTATGAGGAATACTACTGCGATTTTTTTGAGATTCCGTGAAAGACAAGTTCGTGAGTTTTGGAGAATGGTCAAGGATGAGATTGCACTTCCATTGATGATTGATATTTGCGCAGAGGCAGGTTTGCCTGCTCCACTTTGCCTTATGACCCTTCCTCCGGAGCTCAAAGTGCAGATATTGGAGGCGATGCCAAGTGTTGAACTTGCCAAAGTTGGGGGTGTTTGTAAGGAGCTGCGTGATCTTGCAAATGACAATGAGCTGTGGAAGCACAAGTTTGCCGAGGAGTTTTCTCAAGAGTTTTTTCGTACAAGAGAAGTAGTAGAACCCTGGAGAGTTGCTTTTCGTCGACAATGGGAGAGAAAAAAGAAGCAACAGAGGAAGAAAATGGTGGAAAAAGAGAGAAGAATTCAGAAACACCTTCATTGGGGACGGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH UN_NPL4

Protein Analysis

328

Amino Acids

37.99

Weight (kDa)

9.18

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 232 - 274 1.9e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 656
AccI GTMKAC 1 cut(s) 892
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 951
AcuI CTGAAG 2 cut(s) 181, 356
AfaI GTAC 6 cut(s) 56, 62, 90, 216, 380, 853
AfiI CCNNNNNNNGG 3 cut(s) 703, 759, 970
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 3 cut(s) 40, 358, 746
AjnI CCWGG 1 cut(s) 872
AluBI AGCT 4 cut(s) 145, 709, 778, 805
AluI AGCT 4 cut(s) 145, 709, 778, 805
Alw21I GWGCWC 2 cut(s) 174, 711
AlwI GGATC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 155, 778
ApoI RAATTY 1 cut(s) 951
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 2 cut(s) 520, 659
AspS9I GGNCC 2 cut(s) 106, 441
AsuHPI GGTGA 2 cut(s) 17, 383
AvaII GGWCC 1 cut(s) 441
BanII GRGCYC 2 cut(s) 28, 711
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 18, 344
Bbv12I GWGCWC 2 cut(s) 174, 711
BbvI GCAGC 2 cut(s) 142, 765
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 874
BclI TGATCA 1 cut(s) 447
BfaI CTAG 2 cut(s) 149, 462
BfuAI ACCTGC 1 cut(s) 656
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 156, 779
BlsI GCNGC 2 cut(s) 157, 780
BmcAI AGTACT 2 cut(s) 62, 380
Bme1390I CCNGG 1 cut(s) 874
Bme18I GGWCC 1 cut(s) 441
BmgT120I GGNCC 2 cut(s) 106, 441
BmiI GGNNCC 4 cut(s) 108, 256, 417, 442
BmrFI CCNGG 1 cut(s) 874
BmsI GCATC 3 cut(s) 211, 432, 723
BpiI GAAGAC 2 cut(s) 18, 344
BpmI CTGGAG 1 cut(s) 895
BpuEI CTTGAG 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 825, 872
BsaWI WCCGGW 2 cut(s) 182, 703
BsaXI ACNNNNNCTCC 4 cut(s) 47, 77, 685, 715
Bsc4I CCNNNNNNNGG 3 cut(s) 703, 759, 970
Bse118I RCCGGY 1 cut(s) 520
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 1 cut(s) 874
BseDI CCNNGG 2 cut(s) 825, 872
BseGI GGATG 2 cut(s) 508, 628
BseLI CCNNNNNNNGG 3 cut(s) 703, 759, 970
BseMII CTCAG 2 cut(s) 243, 305
BseRI GAGGAG 4 cut(s) 97, 113, 408, 842
BseXI GCAGC 2 cut(s) 142, 765
BsgI GTGCAG 1 cut(s) 737
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 2 cut(s) 174, 711
BsiSI CCGG 3 cut(s) 183, 521, 704
BslI CCNNNNNNNGG 3 cut(s) 703, 759, 970
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 28, 174, 711
Bsp13I TCCGGA 1 cut(s) 703
Bsp143I GATC 4 cut(s) 31, 115, 447, 784
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 242, 304
BspEI TCCGGA 1 cut(s) 703
BspLI GGNNCC 4 cut(s) 108, 256, 417, 442
BspMI ACCTGC 1 cut(s) 656
BspPI GGATC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 2 cut(s) 825, 872
BssMI GATC 4 cut(s) 31, 115, 447, 784
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 874
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 3 cut(s) 165, 522, 675
BstDEI CTNAG 3 cut(s) 175, 229, 291
BstF5I GGATG 2 cut(s) 508, 628
BstHHI GCGC 2 cut(s) 520, 659
BstKTI GATC 4 cut(s) 34, 118, 450, 787
BstMBI GATC 4 cut(s) 31, 115, 447, 784
BstMWI GCNNNNNNNGC 4 cut(s) 164, 169, 715, 811
BstNI CCWGG 1 cut(s) 874
BstNSI RCATGY 2 cut(s) 167, 413
BstSCI CCNGG 1 cut(s) 872
BstV1I GCAGC 2 cut(s) 142, 765
BstV2I GAAGAC 2 cut(s) 18, 344
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 746
BtsCI GGATG 2 cut(s) 508, 628
BveI ACCTGC 1 cut(s) 656
Cac8I GCNNGC 3 cut(s) 165, 522, 675
CfoI GCGC 2 cut(s) 520, 659
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 2 cut(s) 106, 441
CseI GACGC 1 cut(s) 349
Csp6I GTAC 6 cut(s) 55, 61, 89, 215, 379, 852
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 3 cut(s) 164, 218, 410
CviJI RGCY 7 cut(s) 26, 107, 145, 416, 709, 778, 805
CviKI_1 RGCY 7 cut(s) 26, 107, 145, 416, 709, 778, 805
CviQI GTAC 6 cut(s) 55, 61, 89, 215, 379, 852
DdeI CTNAG 3 cut(s) 175, 229, 291
DpnI GATC 4 cut(s) 33, 117, 449, 786
DpnII GATC 4 cut(s) 31, 115, 447, 784
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 709
Eco24I GRGCYC 2 cut(s) 28, 711
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 709
Eco57I CTGAAG 2 cut(s) 181, 356
EcoICRI GAGCTC 1 cut(s) 709
EcoO109I RGGNCCY 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 951
EcoRII CCWGG 1 cut(s) 872
EcoT38I GRGCYC 2 cut(s) 28, 711
FaeI CATG 3 cut(s) 167, 221, 413
FaiI YATR 7 cut(s) 132, 165, 219, 269, 411, 551, 692
FatI CATG 3 cut(s) 163, 217, 409
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 2 cut(s) 156, 779
FokI GGATG 2 cut(s) 515, 635
FriOI GRGCYC 2 cut(s) 28, 711
Fsp4HI GCNGC 2 cut(s) 156, 779
FspBI CTAG 2 cut(s) 149, 462
FspI TGCGCA 1 cut(s) 658
GlaI GCGC 2 cut(s) 519, 658
GluI GCNGC 2 cut(s) 156, 779
GsuI CTGGAG 1 cut(s) 895
HaeIII GGCC 1 cut(s) 107
HapII CCGG 3 cut(s) 183, 521, 704
HgaI GACGC 1 cut(s) 349
HhaI GCGC 2 cut(s) 520, 659
Hin1II CATG 3 cut(s) 167, 221, 413
Hin6I GCGC 2 cut(s) 518, 657
HinP1I GCGC 2 cut(s) 518, 657
HincII GTYRAC 1 cut(s) 893
HindII GTYRAC 1 cut(s) 893
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 3 cut(s) 179, 295, 579
HpaII CCGG 3 cut(s) 183, 521, 704
HphI GGTGA 2 cut(s) 17, 383
Hpy166II GTNNAC 1 cut(s) 893
Hpy188I TCNGA 5 cut(s) 232, 247, 294, 336, 957
Hpy188III TCNNGA 5 cut(s) 29, 427, 599, 704, 839
Hpy8I GTNNAC 1 cut(s) 893
Hpy99I CGWCG 1 cut(s) 894
HpyAV CCTTC 4 cut(s) 38, 469, 707, 974
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 2 cut(s) 209, 980
HpyCH4V TGCA 4 cut(s) 163, 632, 718, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 169, 715, 811
HpyF3I CTNAG 3 cut(s) 175, 229, 291
HpySE526I ACGT 2 cut(s) 209, 980
Hsp92II CATG 3 cut(s) 167, 221, 413
HspAI GCGC 2 cut(s) 518, 657
Kpn2I TCCGGA 1 cut(s) 703
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 4 cut(s) 31, 115, 447, 784
LmnI GCTCC 4 cut(s) 421, 682, 706, 775
Lsp1109I GCAGC 2 cut(s) 142, 765
LweI GCATC 3 cut(s) 211, 432, 723
MaeI CTAG 2 cut(s) 149, 462
MaeII ACGT 2 cut(s) 209, 980
MaeIII GTNAC 1 cut(s) 270
MalI GATC 4 cut(s) 33, 117, 449, 786
MboI GATC 4 cut(s) 31, 115, 447, 784
MboII GAAGA 7 cut(s) 20, 23, 29, 110, 349, 937, 960
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 3 cut(s) 28, 174, 711
MluCI AATT 1 cut(s) 951
MlyI GAGTC 1 cut(s) 173
MreI CGCCGGCG 1 cut(s) 520
MroI TCCGGA 1 cut(s) 703
MroNI GCCGGC 1 cut(s) 520
MspI CCGG 3 cut(s) 183, 521, 704
MspR9I CCNGG 1 cut(s) 874
MvaI CCWGG 1 cut(s) 874
MwoI GCNNNNNNNGC 4 cut(s) 164, 169, 715, 811
NaeI GCCGGC 1 cut(s) 522
NdeII GATC 4 cut(s) 31, 115, 447, 784
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 3 cut(s) 167, 221, 413
NlaIV GGNNCC 4 cut(s) 108, 256, 417, 442
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 1 cut(s) 270
NsbI TGCGCA 1 cut(s) 658
NspI RCATGY 2 cut(s) 167, 413
PaeI GCATGC 1 cut(s) 167
PciI ACATGT 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 295, 579
PkrI GCNGC 2 cut(s) 157, 780
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 441
PscI ACATGT 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 872
PspGI CCWGG 1 cut(s) 872
PspN4I GGNNCC 4 cut(s) 108, 256, 417, 442
PspPI GGNCC 2 cut(s) 106, 441
PspPPI RGGWCCY 1 cut(s) 441
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 6 cut(s) 56, 62, 90, 216, 380, 853
RsaNI GTAC 6 cut(s) 55, 61, 89, 215, 379, 852
SacI GAGCTC 1 cut(s) 711
SalI GTCGAC 1 cut(s) 891
SatI GCNGC 2 cut(s) 156, 779
Sau3AI GATC 4 cut(s) 31, 115, 447, 784
Sau96I GGNCC 2 cut(s) 106, 441
ScaI AGTACT 2 cut(s) 62, 380
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 874
SduI GDGCHC 3 cut(s) 28, 174, 711
SfaNI GCATC 3 cut(s) 211, 432, 723
SgrAI CRCCGGYG 1 cut(s) 520
SinI GGWCC 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 837
SmoI CTYRAG 1 cut(s) 837
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 951
SsiI CCGC 1 cut(s) 193
SspMI CTAG 2 cut(s) 149, 462
SstI GAGCTC 1 cut(s) 711
StyD4I CCNGG 1 cut(s) 872
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 2 cut(s) 212, 983
TaqI TCGA 1 cut(s) 892
TasI AATT 1 cut(s) 951
TatI WGTACW 3 cut(s) 54, 60, 378
TfiI GAWTC 2 cut(s) 295, 579
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 155, 778
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 57, 956
TspGWI ACGGA 3 cut(s) 202, 247, 572
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 951
XceI RCATGY 2 cut(s) 167, 413
XmiI GTMKAC 1 cut(s) 892
XspI CTAG 2 cut(s) 149, 462
ZrmI AGTACT 2 cut(s) 62, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.