Rh4DG054800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000910
Physical Location & Seq
Reverse (-)
8509024 .. 8509800
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG054800.1

Sequence Viewer

Length: 777 bp
ATGGAAATCGATGATATTGGTTCTGATAACAGGCACTCGGTGCACGACTCCTTGAGGAGAGTACTGAGGGAGAAACTGACTGATAACCACCCTGGTAATAAGCTCAAGATATTGAAATTAGTGGTACATGTGGCTCTCTTAGAGTCCGGTTTTGTGCGGTTCAACCCAGGTTCAGTTTCGGGTAAATCGGTTTTCTATACTTTGCCTGAGATTCTACAAAATGATGGTCAGGTTATTGAAGGGATTGTGATGGTGTTTCCCAGTCCGAGTCCATTCTTGGCGGCCTACCGTGACGGTTACCCTGTATGGTTGGATGAGAAGAAGTTTGCGCCTGCCATGATCGATTTTGTTTGGGGAAACAATAGATTTGATAATTATCATGCGAATGTGGGATTACTTGAGAGACAAGTTATGGAGATTAGAAAGATTGTGAAGAATGAGATTGCATTGCCATTACTAATAGATCTTTGTGCAGTCACCGGTTTGCGTGCTCCACCGTGCCTTATGGGCCTTCCTGCAGAGCTTGGAGCAAAGATTTTGAAGTCGCTGCCTGGTGAGGATATTGCAAGAGTGTCATGTGTCTGTAAGGAGCTGCGAAATCTGGCTAATGATGATGAGTTGTGGAAGCAAAAGTTTGCCGAGGAGTTTGTCATAAATTGGACTGAAGTTGGAGACTGCAAGTCTTGGAAGTCCTGGTTTGTTGCAAACTGGAACAACAAGAAGGAAACAAATAAAAAGATTATAGTGGGATATTGGTGGCGCCGGAAAAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

258

Amino Acids

29.5

Weight (kDa)

8.71

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 170 - 209 6.5e-08 F-box domain
F-box-like PF12937 171 - 212 5.5e-11 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 759
AciI CCGC 2 cut(s) 157, 281
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 760
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 63, 126
AflIII ACRYGT 1 cut(s) 127
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 115, 163, 239, 541
AhdI GACNNNNNGTC 1 cut(s) 679
AjnI CCWGG 4 cut(s) 91, 166, 550, 692
AluBI AGCT 3 cut(s) 103, 523, 592
AluI AGCT 3 cut(s) 103, 523, 592
Alw21I GWGCWC 2 cut(s) 45, 493
Alw26I GTCTC 2 cut(s) 397, 666
Alw44I GTGCAC 1 cut(s) 41
AoxI GGCC 2 cut(s) 282, 508
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 547, 592
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AsiGI ACCGGT 1 cut(s) 479
AspLEI GCGC 2 cut(s) 331, 762
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 469, 566
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 759
Bbv12I GWGCWC 2 cut(s) 45, 493
BbvI GCAGC 2 cut(s) 534, 579
BccI CCATC 2 cut(s) 218, 244
BciT130I CCWGG 4 cut(s) 93, 168, 552, 694
BcoDI GTCTC 2 cut(s) 397, 666
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 507
BglII AGATCT 1 cut(s) 463
BisI GCNGC 3 cut(s) 282, 548, 593
BlsI GCNGC 3 cut(s) 283, 549, 594
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 4 cut(s) 93, 168, 552, 694
BmeRI GACNNNNNGTC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 761
BmrFI CCNGG 4 cut(s) 93, 168, 552, 694
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BpuEI CTTGAG 3 cut(s) 73, 89, 419
Bsa29I ATCGAT 2 cut(s) 9, 342
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 760
BsaJI CCNNGG 3 cut(s) 91, 166, 639
BsaWI WCCGGW 2 cut(s) 146, 479
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 261, 713
Bse3DI GCAATG 1 cut(s) 446
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 4 cut(s) 93, 168, 552, 694
BseCI ATCGAT 2 cut(s) 9, 342
BseDI CCNNGG 3 cut(s) 91, 166, 639
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 375
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 56, 198
BseNI ACTGG 2 cut(s) 261, 713
BseRI GAGGAG 2 cut(s) 70, 656
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 2 cut(s) 534, 579
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 2 cut(s) 284, 510
BshNI GGYRCC 1 cut(s) 759
BshTI ACCGGT 1 cut(s) 479
BshVI ATCGAT 2 cut(s) 9, 342
BsiHKAI GWGCWC 2 cut(s) 45, 493
BsiSI CCGG 3 cut(s) 147, 480, 763
BsmAI GTCTC 2 cut(s) 397, 666
BsnI GGCC 2 cut(s) 284, 510
Bsp1286I GDGCHC 2 cut(s) 45, 493
Bsp143I GATC 2 cut(s) 339, 463
BspACI CCGC 2 cut(s) 157, 281
BspANI GGCC 2 cut(s) 284, 510
BspCNI CTCAG 2 cut(s) 57, 199
BspDI ATCGAT 2 cut(s) 9, 342
BspLI GGNNCC 1 cut(s) 761
BspMAI CTGCAG 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 759
BsrDI GCAATG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 479
BsrI ACTGG 2 cut(s) 261, 713
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 3 cut(s) 91, 166, 639
BssMI GATC 2 cut(s) 339, 463
BssNI GRCGYC 1 cut(s) 760
Bst2UI CCWGG 4 cut(s) 93, 168, 552, 694
Bst4CI ACNGT 3 cut(s) 290, 296, 498
BstACI GRCGYC 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 333, 489
BstDEI CTNAG 3 cut(s) 65, 139, 207
BstEII GGTNACC 1 cut(s) 296
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 763
BstHHI GCGC 2 cut(s) 331, 762
BstKTI GATC 2 cut(s) 342, 466
BstMAI GTCTC 2 cut(s) 397, 666
BstMBI GATC 2 cut(s) 339, 463
BstMWI GCNNNNNNNGC 2 cut(s) 40, 507
BstNI CCWGG 4 cut(s) 93, 168, 552, 694
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 296
BstSCI CCNGG 4 cut(s) 91, 166, 550, 692
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 534, 579
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 2 cut(s) 9, 342
BsuRI GGCC 2 cut(s) 284, 510
BsuTUI ATCGAT 2 cut(s) 9, 342
BtsCI GGATG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 333, 489
CfoI GCGC 2 cut(s) 331, 762
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 508
ClaI ATCGAT 2 cut(s) 9, 342
Csp6I GTAC 2 cut(s) 62, 125
CspAI ACCGGT 1 cut(s) 479
CviAII CATG 4 cut(s) 128, 337, 380, 576
CviJI RGCY 7 cut(s) 103, 134, 284, 510, 523, 592, 605
CviKI_1 RGCY 7 cut(s) 103, 134, 284, 510, 523, 592, 605
CviQI GTAC 2 cut(s) 62, 125
DdeI CTNAG 3 cut(s) 65, 139, 207
DinI GGCGCC 1 cut(s) 761
DpnI GATC 2 cut(s) 341, 465
DpnII GATC 2 cut(s) 339, 463
DraIII CACNNNGTG 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 679
Eam1105I GACNNNNNGTC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
EcoRII CCWGG 4 cut(s) 91, 166, 550, 692
EgeI GGCGCC 1 cut(s) 761
EheI GGCGCC 1 cut(s) 761
FaeI CATG 4 cut(s) 131, 340, 383, 579
FatI CATG 4 cut(s) 127, 336, 379, 575
Fnu4HI GCNGC 3 cut(s) 282, 548, 593
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 282, 548, 593
GlaI GCGC 2 cut(s) 330, 761
GluI GCNGC 3 cut(s) 282, 548, 593
HaeII RGCGCY 1 cut(s) 763
HaeIII GGCC 2 cut(s) 284, 510
HapII CCGG 3 cut(s) 147, 480, 763
HhaI GCGC 2 cut(s) 331, 762
Hin1I GRCGYC 1 cut(s) 760
Hin1II CATG 4 cut(s) 131, 340, 383, 579
Hin6I GCGC 2 cut(s) 329, 760
HinP1I GCGC 2 cut(s) 329, 760
HinfI GANTC 4 cut(s) 47, 143, 211, 268
HpaII CCGG 3 cut(s) 147, 480, 763
HphI GGTGA 2 cut(s) 469, 566
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 25, 267
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 233, 521, 715
HpyCH4III ACNGT 3 cut(s) 290, 296, 498
HpyCH4V TGCA 7 cut(s) 43, 446, 473, 518, 566, 678, 704
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 507
HpyF3I CTNAG 3 cut(s) 65, 139, 207
Hsp92I GRCGYC 1 cut(s) 760
Hsp92II CATG 4 cut(s) 131, 340, 383, 579
HspAI GCGC 2 cut(s) 329, 760
KasI GGCGCC 1 cut(s) 759
Kzo9I GATC 2 cut(s) 339, 463
LmnI GCTCC 3 cut(s) 496, 527, 589
Lsp1109I GCAGC 2 cut(s) 534, 579
MaeIII GTNAC 3 cut(s) 290, 296, 475
MalI GATC 2 cut(s) 341, 465
MboI GATC 2 cut(s) 339, 463
MboII GAAGA 2 cut(s) 331, 445
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 45, 493
MluCI AATT 3 cut(s) 116, 373, 655
Mly113I GGCGCC 1 cut(s) 760
MlyI GAGTC 3 cut(s) 41, 152, 277
MmeI TCCRAC 2 cut(s) 291, 649
MnlI CCTC 4 cut(s) 48, 60, 550, 634
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 3 cut(s) 147, 480, 763
MspR9I CCNGG 4 cut(s) 93, 168, 552, 694
MvaI CCWGG 4 cut(s) 93, 168, 552, 694
MwoI GCNNNNNNNGC 2 cut(s) 40, 507
NarI GGCGCC 1 cut(s) 760
NdeII GATC 2 cut(s) 339, 463
NlaIII CATG 4 cut(s) 131, 340, 383, 579
NlaIV GGNNCC 1 cut(s) 761
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 2 cut(s) 290, 475
NspI RCATGY 1 cut(s) 131
PciI ACATGT 1 cut(s) 127
PfeI GAWTC 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 3 cut(s) 283, 549, 594
PleI GAGTC 3 cut(s) 41, 151, 276
PluTI GGCGCC 1 cut(s) 763
PpsI GAGTC 3 cut(s) 41, 151, 276
PscI ACATGT 1 cut(s) 127
Psp6I CCWGG 4 cut(s) 91, 166, 550, 692
PspEI GGTNACC 1 cut(s) 296
PspGI CCWGG 4 cut(s) 91, 166, 550, 692
PspN4I GGNNCC 1 cut(s) 761
PspPI GGNCC 1 cut(s) 508
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 2 cut(s) 63, 126
RsaNI GTAC 2 cut(s) 62, 125
RseI CAYNNNNRTG 1 cut(s) 384
SatI GCNGC 3 cut(s) 282, 548, 593
Sau3AI GATC 2 cut(s) 339, 463
Sau96I GGNCC 1 cut(s) 508
ScaI AGTACT 1 cut(s) 63
SchI GAGTC 3 cut(s) 41, 152, 277
ScrFI CCNGG 4 cut(s) 93, 168, 552, 694
SduI GDGCHC 2 cut(s) 45, 493
SetI ASST 5 cut(s) 105, 172, 234, 525, 594
SfcI CTRYAG 1 cut(s) 516
SfoI GGCGCC 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 3 cut(s) 52, 104, 398
SmoI CTYRAG 3 cut(s) 52, 104, 398
Sse9I AATT 3 cut(s) 116, 373, 655
SsiI CCGC 2 cut(s) 157, 281
SspDI GGCGCC 1 cut(s) 759
StyD4I CCNGG 4 cut(s) 91, 166, 550, 692
TaaI ACNGT 3 cut(s) 290, 296, 498
TaqI TCGA 2 cut(s) 9, 342
TasI AATT 3 cut(s) 116, 373, 655
TatI WGTACW 1 cut(s) 61
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 211
TseFI GTSAC 2 cut(s) 290, 475
TseI GCWGC 2 cut(s) 547, 592
Tsp45I GTSAC 2 cut(s) 290, 475
VneI GTGCAC 1 cut(s) 41
XceI RCATGY 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.