Rroxscaffold_5G00351910

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000910
Physical Location & Seq
Reverse (-)
28670105 .. 28671912
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351910.1

Sequence Viewer

Length: 858 bp
ATGGAGGATTTGGGTGCCCAACACCTCATAAATCACAAGTCATTGTTGGAGAATGCAGTACATGCGGTGCTGTTGGACTCGGGTTTTGTCCGAATATACTCCGATTCGGTTCCCGGTGTTCACTTTACGTCCCGTTTTTATACTTTGCCTGAAATACTGCAAAATCTGGGAGGTAGTAGCAGCACCGGCAGCAGCTGTAGTAATACGATTATTGAAAGGATAGGGCTCAGGTTTCAGAGCTTAGGGCACTTCCTGAATGTTTATGGGTATTTAATCGGCGGCGATTCTGTATACCGGGTAAGCTTGGAGGCGCACAAGGTTGCATCCATTATTGAATTCGTTTGGGCAAGCAGAATAAACGTGAATGATATTGTCAAGGTTGGATTACTTGAGATGCAAGAAACCAAAATTTTTGAATTTTGGAAGACTATTAAAGATGGAATTGCATTGCCTTTGATGATTGATCTTTGTGCAAAGGCGGGGTTGCCGTCTCCGCCCTGCCTTATGAGTCTTCCTCCGGAGCTCAAGGCCAAGATTTTGAAGTCACTGTGTGGTGTTGATATTGCAAAAGTTGAATGTACCTGCAGGGAGCTGCGACAATTAGGCAATGAAGATGAGTTGTGGTGGAACAAGTTAGCGTATGAGTTTCCGAGGTCGTGGAATGAGGATGATAATGATGATATGGTAGGGGGAACGAAAACGTGGAAGACGGTCTATGGTGATAAATGGAGGCAGCAAAAATATCCCTGGAATCCAAGGAATGAGAGGTCTTTCTCACACGCCAATTGGCCAAATTCTGTGCGAGCACTGGAACTCCATCAACAAGAATATTTACCAGGCGACGTCTATCTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

285

Amino Acids

32.38

Weight (kDa)

6.08

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 170 - 208 3e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 846
Acc36I ACCTGC 1 cut(s) 590
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 4 cut(s) 65, 279, 479, 494
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 4 cut(s) 335, 408, 416, 793
AcyI GRCGYC 1 cut(s) 843
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 2 cut(s) 60, 580
AgsI TTSAA 5 cut(s) 215, 335, 416, 541, 575
AjnI CCWGG 2 cut(s) 746, 835
AluBI AGCT 5 cut(s) 195, 240, 303, 523, 592
AluI AGCT 5 cut(s) 195, 240, 303, 523, 592
Alw21I GWGCWC 2 cut(s) 525, 808
Alw26I GTCTC 1 cut(s) 495
AlwNI CAGNNNCTG 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 2 cut(s) 528, 788
ApeKI GCWGC 5 cut(s) 180, 189, 192, 592, 733
ApoI RAATTY 4 cut(s) 335, 408, 416, 793
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 313
AsuC2I CCSGG 2 cut(s) 114, 296
AsuHPI GGTGA 1 cut(s) 731
AvaI CYCGRG 1 cut(s) 79
BaeGI GKGCMC 2 cut(s) 19, 249
BalI TGGCCA 1 cut(s) 790
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 2 cut(s) 228, 525
BbsI GAAGAC 3 cut(s) 431, 503, 713
Bbv12I GWGCWC 2 cut(s) 525, 808
BbvI GCAGC 5 cut(s) 192, 201, 204, 579, 745
BccI CCATC 2 cut(s) 431, 825
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 2 cut(s) 748, 837
BcnI CCSGG 2 cut(s) 114, 296
BcoDI GTCTC 1 cut(s) 495
BfmI CTRYAG 2 cut(s) 196, 583
BfuAI ACCTGC 1 cut(s) 590
BisI GCNGC 6 cut(s) 181, 190, 193, 280, 593, 734
BlsI GCNGC 6 cut(s) 182, 191, 194, 281, 594, 735
Bme1390I CCNGG 4 cut(s) 114, 296, 748, 837
BmeT110I CYCGRG 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 16, 111
BmrFI CCNGG 4 cut(s) 114, 296, 748, 837
BmsI GCATC 2 cut(s) 332, 384
BpiI GAAGAC 3 cut(s) 431, 503, 713
BplI GAGNNNNNCTC 2 cut(s) 499, 531
Bpu10I CCTNAGC 2 cut(s) 227, 241
BpuEI CTTGAG 2 cut(s) 410, 509
BpuMI CCSGG 2 cut(s) 114, 296
BsaHI GRCGYC 1 cut(s) 843
BsaJI CCNNGG 3 cut(s) 650, 746, 755
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 813
Bse3DI GCAATG 2 cut(s) 446, 613
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 2 cut(s) 748, 837
BseDI CCNNGG 3 cut(s) 650, 746, 755
BseGI GGATG 2 cut(s) 323, 673
BseMI GCAATG 2 cut(s) 446, 613
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 813
BseSI GKGCMC 2 cut(s) 19, 249
BseXI GCAGC 5 cut(s) 192, 201, 204, 579, 745
BshFI GGCC 2 cut(s) 530, 790
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 525, 808
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 4 cut(s) 114, 186, 295, 518
BslFI GGGAC 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 495
BsmBI CGTCTC 1 cut(s) 495
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 2 cut(s) 530, 790
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 5 cut(s) 19, 228, 249, 525, 808
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 4 cut(s) 65, 279, 479, 494
BspANI GGCC 2 cut(s) 530, 790
BspCNI CTCAG 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 16, 111
BspMAI CTGCAG 1 cut(s) 587
BspMI ACCTGC 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 446, 613
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 813
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 3 cut(s) 650, 746, 755
BssMI GATC 1 cut(s) 463
BssNAI GTATAC 1 cut(s) 292
BssNI GRCGYC 1 cut(s) 843
BssT1I CCWWGG 1 cut(s) 755
Bst1107I GTATAC 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 748, 837
Bst4CI ACNGT 2 cut(s) 549, 712
BstACI GRCGYC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 349, 804
BstDEI CTNAG 2 cut(s) 227, 241
BstF5I GGATG 2 cut(s) 323, 673
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 4 cut(s) 62, 186, 189, 493
BstNI CCWGG 2 cut(s) 748, 837
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 4 cut(s) 112, 294, 746, 835
BstSFI CTRYAG 2 cut(s) 196, 583
BstSLI GKGCMC 2 cut(s) 19, 249
BstV1I GCAGC 5 cut(s) 192, 201, 204, 579, 745
BstV2I GAAGAC 3 cut(s) 431, 503, 713
BstZ17I GTATAC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 530, 790
BtsCI GGATG 2 cut(s) 323, 673
BtsIMutI CAGTG 2 cut(s) 545, 806
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 2 cut(s) 349, 804
CaiI CAGNNNCTG 1 cut(s) 195
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 185
Csp6I GTAC 2 cut(s) 59, 579
CviAII CATG 1 cut(s) 62
CviJI RGCY 8 cut(s) 195, 226, 240, 303, 523, 530, 592, 790
CviKI_1 RGCY 8 cut(s) 195, 226, 240, 303, 523, 530, 592, 790
CviQI GTAC 2 cut(s) 59, 579
DdeI CTNAG 2 cut(s) 227, 241
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
DraIII CACNNNGTG 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 788
EciI GGCGGA 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 755
Eco24I GRGCYC 2 cut(s) 228, 525
Eco53kI GAGCTC 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 746, 835
EcoT14I CCWWGG 1 cut(s) 755
EcoT38I GRGCYC 2 cut(s) 228, 525
ErhI CCWWGG 1 cut(s) 755
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 1 cut(s) 65
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 472
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 6 cut(s) 181, 190, 193, 280, 593, 734
FokI GGATG 2 cut(s) 310, 680
FriOI GRGCYC 2 cut(s) 228, 525
Fsp4HI GCNGC 6 cut(s) 181, 190, 193, 280, 593, 734
GlaI GCGC 1 cut(s) 312
GluI GCNGC 6 cut(s) 181, 190, 193, 280, 593, 734
HaeIII GGCC 2 cut(s) 530, 790
HapII CCGG 4 cut(s) 114, 186, 295, 518
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 843
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 5 cut(s) 77, 104, 284, 508, 751
HpaII CCGG 4 cut(s) 114, 186, 295, 518
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 2 cut(s) 121, 292
Hpy188I TCNGA 5 cut(s) 92, 103, 237, 651, 852
Hpy188III TCNNGA 2 cut(s) 253, 518
Hpy8I GTNNAC 2 cut(s) 121, 292
Hpy99I CGWCG 1 cut(s) 845
HpyCH4III ACNGT 2 cut(s) 549, 712
HpyCH4IV ACGT 4 cut(s) 128, 360, 701, 843
HpyCH4V TGCA 8 cut(s) 56, 160, 323, 397, 446, 473, 566, 585
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 186, 189, 493
HpyF3I CTNAG 2 cut(s) 227, 241
HpySE526I ACGT 4 cut(s) 128, 360, 701, 843
Hsp92I GRCGYC 1 cut(s) 843
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 311
Kpn2I TCCGGA 1 cut(s) 517
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 520, 589
Lsp1109I GCAGC 5 cut(s) 192, 201, 204, 579, 745
LweI GCATC 2 cut(s) 332, 384
MaeII ACGT 4 cut(s) 128, 360, 701, 843
MaeIII GTNAC 1 cut(s) 543
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 4 cut(s) 436, 503, 623, 718
MfeI CAATTG 1 cut(s) 784
MhlI GDGCHC 5 cut(s) 19, 228, 249, 525, 808
MlsI TGGCCA 1 cut(s) 790
MluCI AATT 7 cut(s) 335, 408, 416, 441, 599, 784, 793
MluNI TGGCCA 1 cut(s) 790
MlyI GAGTC 2 cut(s) 71, 517
MmeI TCCRAC 3 cut(s) 27, 54, 361
MnlI CCTC 8 cut(s) 35, 164, 301, 525, 645, 658, 723, 759
Mox20I TGGCCA 1 cut(s) 790
MroI TCCGGA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 790
MseI TTAA 2 cut(s) 272, 432
Msp20I TGGCCA 1 cut(s) 790
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 4 cut(s) 114, 186, 295, 518
MspR9I CCNGG 4 cut(s) 114, 296, 748, 837
MunI CAATTG 1 cut(s) 784
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 2 cut(s) 748, 837
MwoI GCNNNNNNNGC 4 cut(s) 62, 186, 189, 493
NciI CCSGG 2 cut(s) 114, 296
NdeII GATC 1 cut(s) 463
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 16, 111
NmuCI GTSAC 1 cut(s) 543
NspI RCATGY 1 cut(s) 65
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 104, 284, 751
PkrI GCNGC 6 cut(s) 182, 191, 194, 281, 594, 735
PleI GAGTC 2 cut(s) 71, 516
PpsI GAGTC 2 cut(s) 71, 516
Psp124BI GAGCTC 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 746, 835
PspGI CCWGG 2 cut(s) 746, 835
PspN4I GGNNCC 2 cut(s) 16, 111
PstI CTGCAG 1 cut(s) 587
PstNI CAGNNNCTG 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 2 cut(s) 60, 580
RsaNI GTAC 2 cut(s) 59, 579
SacI GAGCTC 1 cut(s) 525
SaqAI TTAA 2 cut(s) 272, 432
SatI GCNGC 6 cut(s) 181, 190, 193, 280, 593, 734
Sau3AI GATC 1 cut(s) 463
SbfI CCTGCAGG 1 cut(s) 587
SchI GAGTC 2 cut(s) 71, 517
ScrFI CCNGG 4 cut(s) 114, 296, 748, 837
SdaI CCTGCAGG 1 cut(s) 587
SduI GDGCHC 5 cut(s) 19, 228, 249, 525, 808
SfaNI GCATC 2 cut(s) 332, 384
SfcI CTRYAG 2 cut(s) 196, 583
SmlI CTYRAG 2 cut(s) 389, 524
SmoI CTYRAG 2 cut(s) 389, 524
Sse8387I CCTGCAGG 1 cut(s) 587
Sse9I AATT 7 cut(s) 335, 408, 416, 441, 599, 784, 793
SsiI CCGC 4 cut(s) 65, 279, 479, 494
SspI AATATT 1 cut(s) 830
SstI GAGCTC 1 cut(s) 525
StyD4I CCNGG 4 cut(s) 112, 294, 746, 835
StyI CCWWGG 1 cut(s) 755
TaaI ACNGT 2 cut(s) 549, 712
TaiI ACGT 4 cut(s) 131, 363, 704, 846
TasI AATT 7 cut(s) 335, 408, 416, 441, 599, 784, 793
TatI WGTACW 1 cut(s) 58
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 3 cut(s) 104, 284, 751
Tru1I TTAA 2 cut(s) 272, 432
Tru9I TTAA 2 cut(s) 272, 432
TscAI CASTG 2 cut(s) 552, 813
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 5 cut(s) 180, 189, 192, 592, 733
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 1 cut(s) 624
TspRI CASTG 2 cut(s) 552, 813
XapI RAATTY 4 cut(s) 335, 408, 416, 793
XceI RCATGY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 291
ZraI GACGTC 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.