Rroxscaffold_5G00351990

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000910
Physical Location & Seq
Reverse (-)
28792345 .. 28799864
7520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351990.1

Sequence Viewer

Length: 1068 bp
ATGGCTTTGTTTATGGAACAATTTGGAGTCCGGATAGTGGGTTATACATGCACTACTAGTGAAATTGTTCTAGTCTATGCACATGATTTAAACACATGCAACCTTGCTGAAAACCTGCCCCCGGCGTTTGAACTAGTACACCGGACACCAATGGGTGAAGAAGACGAAGAGAGGGCTTGTGATCCTTTGAAAGACGACAAGTACAAGTACTCCCCATCTTTATTGTTGAGGAGGGTACTCACAGAGGAGTTGGCCGCCCAAGACGTTCACAGAAACCACAAAAACAACAAGCTTCTCGTCGCTGCGGTGCATGCTGTGCTCTTAGACTCCGGTTTCGTTCTCTTTAGTTCGGGTACGTCAGTACATGATGCCCTGTTAGAGTTAGGTTTCACCGAGTTCGGTTCGGTATCTGGTATGTCACATTCCTACACTTTGCCTGAGATTCTTATCGAACAAGATAATTGCGATTGTAGTAGTAATCGGAAGATGGAAGGAATTGTTTTGAAGTTTGAGAATTCAGGTAACTTTTCCTCTGACCAGAAAAGAACAAAACATGTGGCTCCTCGCATGGTGAAAGTTAGTGGGTCCTTGATTAATTCTGGTTCTAGGTTTGGGCAGAAGCACAAGAAGAGACAAGTTTGTGAGTTTTGGAACATTGTCAAGGATGAGATTGCACTTCCATTGCTGATTGATCTTTGCGCAGAGGCTGGTTTGCCTGCTCCGTTGTGCCTTATGAGCCTTCCTCCAGAGCTCAAAATGAAGATTTTGGAGGCAATGCCGGGTGCTGATCTTGCCAGAGTAGGGGGTGTTTGTAAGGAGCTGCGAGATCTTGCAAATGACAATGAGTTGTGGAAGCACAAGTTAGCCCAGGAGTTTGCTGAGGAGTTTTCTGGTGCAAGAGAAGTACAAGAACTCTGGAAAGTTACTTTTCGTCGACAATGGGAGACTAAAAGGGAGCAAGCAAAGAAACTAGTGGGAAAAAAGAGAGGACGTGAGAACGTTTATTGTTTCCATTGGCAACCACGTCCTAAATATCCTAAATGGACTCATGAACCATATTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH UN_NPL4

Protein Analysis

355

Amino Acids

40.42

Weight (kDa)

6.87

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 245 - 286 9.7e-06 F-box domain
F-box-like PF12937 246 - 286 2.4e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 700
Acc36I ACCTGC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 934
AccIII TCCGGA 1 cut(s) 30
AciI CCGC 2 cut(s) 255, 305
AclI AACGTT 1 cut(s) 999
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 514
AfaI GTAC 7 cut(s) 138, 203, 209, 237, 355, 363, 906
AfiI CCNNNNNNNGG 3 cut(s) 37, 121, 801
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 131, 190, 505
AhlI ACTAGT 3 cut(s) 56, 133, 970
AjiI CACGTC 2 cut(s) 992, 1025
AjnI CCWGG 1 cut(s) 867
AluBI AGCT 3 cut(s) 292, 751, 820
AluI AGCT 3 cut(s) 292, 751, 820
Alw21I GWGCWC 2 cut(s) 321, 753
Alw26I GTCTC 2 cut(s) 625, 938
AlwI GGATC 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 30
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 302, 820
ApoI RAATTY 1 cut(s) 514
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AseI ATTAAT 1 cut(s) 594
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 1 cut(s) 585
AsuC2I CCSGG 2 cut(s) 122, 780
AsuHPI GGTGA 3 cut(s) 167, 382, 583
AvaII GGWCC 1 cut(s) 585
BaeI ACNNNNGTAYC 2 cut(s) 345, 378
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 321, 753
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 2 cut(s) 289, 807
BccI CCATC 2 cut(s) 223, 481
BciT130I CCWGG 1 cut(s) 869
BcnI CCSGG 2 cut(s) 122, 780
BcoDI GTCTC 2 cut(s) 625, 938
BcuI ACTAGT 3 cut(s) 56, 133, 970
BfaI CTAG 5 cut(s) 57, 71, 134, 606, 971
BfuAI ACCTGC 1 cut(s) 123
BglII AGATCT 1 cut(s) 826
BisI GCNGC 3 cut(s) 255, 303, 821
BlsI GCNGC 3 cut(s) 256, 304, 822
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 3 cut(s) 122, 780, 869
Bme18I GGWCC 1 cut(s) 585
BmgBI CACGTC 2 cut(s) 992, 1025
BmgT120I GGNCC 1 cut(s) 585
BmiI GGNNCC 2 cut(s) 561, 586
BmrFI CCNGG 3 cut(s) 122, 780, 869
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 727, 759
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 879
BpuMI CCSGG 2 cut(s) 122, 780
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 120, 867
BsaWI WCCGGW 3 cut(s) 30, 141, 329
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 121, 801
Bse3DI GCAATG 2 cut(s) 680, 780
Bse8I GATNNNNATC 1 cut(s) 446
BseAI TCCGGA 1 cut(s) 30
BseBI CCWGG 1 cut(s) 869
BseDI CCNNGG 2 cut(s) 120, 867
BseGI GGATG 1 cut(s) 670
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 37, 121, 801
BseMI GCAATG 2 cut(s) 680, 780
BseMII CTCAG 2 cut(s) 429, 870
BseRI GAGGAG 4 cut(s) 244, 260, 552, 896
BseXI GCAGC 2 cut(s) 289, 807
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 2 cut(s) 321, 753
BsiSI CCGG 5 cut(s) 31, 122, 142, 330, 779
BslI CCNNNNNNNGG 3 cut(s) 37, 121, 801
BsmAI GTCTC 2 cut(s) 625, 938
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 321, 753
Bsp13I TCCGGA 1 cut(s) 30
Bsp143I GATC 4 cut(s) 181, 691, 787, 826
BspACI CCGC 2 cut(s) 255, 305
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 2 cut(s) 430, 871
BspEI TCCGGA 1 cut(s) 30
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 2 cut(s) 561, 586
BspMI ACCTGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 680, 780
BssECI CCNNGG 2 cut(s) 120, 867
BssMI GATC 4 cut(s) 181, 691, 787, 826
Bst2UI CCWGG 1 cut(s) 869
Bst6I CTCTTC 2 cut(s) 162, 623
BstAPI GCANNNNNTGC 1 cut(s) 316
BstC8I GCNNGC 3 cut(s) 312, 717, 960
BstDEI CTNAG 3 cut(s) 322, 438, 879
BstF5I GGATG 1 cut(s) 670
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 4 cut(s) 184, 694, 790, 829
BstMAI GTCTC 2 cut(s) 625, 938
BstMBI GATC 4 cut(s) 181, 691, 787, 826
BstMWI GCNNNNNNNGC 4 cut(s) 311, 316, 735, 791
BstNI CCWGG 1 cut(s) 869
BstNSI RCATGY 4 cut(s) 51, 99, 314, 557
BstSCI CCNGG 3 cut(s) 120, 778, 867
BstV1I GCAGC 2 cut(s) 289, 807
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BsuRI GGCC 1 cut(s) 254
BtrI CACGTC 2 cut(s) 992, 1025
BtsCI GGATG 1 cut(s) 670
BveI ACCTGC 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 312, 717, 960
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 1048
CfoI GCGC 1 cut(s) 701
Cfr13I GGNCC 1 cut(s) 585
Csp6I GTAC 7 cut(s) 137, 202, 208, 236, 354, 362, 905
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviAII CATG 8 cut(s) 48, 83, 96, 311, 365, 554, 568, 1049
CviQI GTAC 7 cut(s) 137, 202, 208, 236, 354, 362, 905
DdeI CTNAG 3 cut(s) 322, 438, 879
DpnI GATC 4 cut(s) 183, 693, 789, 828
DpnII GATC 4 cut(s) 181, 691, 787, 826
DraI TTTAAA 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 162, 623
EarI CTCTTC 2 cut(s) 162, 623
Ecl136II GAGCTC 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 585
Eco53kI GAGCTC 1 cut(s) 751
EcoICRI GAGCTC 1 cut(s) 751
EcoO109I RGGNCCY 1 cut(s) 585
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 753
FaeI CATG 8 cut(s) 51, 86, 99, 314, 368, 557, 571, 1052
FatI CATG 8 cut(s) 47, 82, 95, 310, 364, 553, 567, 1048
FblI GTMKAC 1 cut(s) 934
Fnu4HI GCNGC 3 cut(s) 255, 303, 821
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 3 cut(s) 255, 303, 821
FspBI CTAG 5 cut(s) 57, 71, 134, 606, 971
FspI TGCGCA 1 cut(s) 700
GlaI GCGC 1 cut(s) 700
GluI GCNGC 3 cut(s) 255, 303, 821
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 1 cut(s) 254
HapII CCGG 5 cut(s) 31, 122, 142, 330, 779
HhaI GCGC 1 cut(s) 701
Hin1II CATG 8 cut(s) 51, 86, 99, 314, 368, 557, 571, 1052
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HincII GTYRAC 1 cut(s) 935
HindII GTYRAC 1 cut(s) 935
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 4 cut(s) 27, 326, 442, 1045
HpaII CCGG 5 cut(s) 31, 122, 142, 330, 779
HphI GGTGA 3 cut(s) 167, 382, 583
Hpy166II GTNNAC 3 cut(s) 139, 268, 935
Hpy188I TCNGA 2 cut(s) 483, 535
Hpy188III TCNNGA 4 cut(s) 31, 746, 916, 1049
Hpy8I GTNNAC 3 cut(s) 139, 268, 935
Hpy99I CGWCG 2 cut(s) 302, 936
HpyAV CCTTC 2 cut(s) 485, 749
HpyCH4IV ACGT 5 cut(s) 264, 356, 991, 999, 1024
HpyCH4V TGCA 7 cut(s) 51, 80, 99, 310, 674, 833, 896
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 316, 735, 791
HpyF3I CTNAG 3 cut(s) 322, 438, 879
HpySE526I ACGT 5 cut(s) 264, 356, 991, 999, 1024
Hsp92II CATG 8 cut(s) 51, 86, 99, 314, 368, 557, 571, 1052
HspAI GCGC 1 cut(s) 699
Kpn2I TCCGGA 1 cut(s) 30
Kzo9I GATC 4 cut(s) 181, 691, 787, 826
LmnI GCTCC 4 cut(s) 565, 724, 817, 955
Lsp1109I GCAGC 2 cut(s) 289, 807
LweI GCATC 1 cut(s) 358
MaeI CTAG 5 cut(s) 57, 71, 134, 606, 971
MaeII ACGT 5 cut(s) 264, 356, 991, 999, 1024
MaeIII GTNAC 3 cut(s) 417, 521, 922
MalI GATC 4 cut(s) 183, 693, 789, 828
MboI GATC 4 cut(s) 181, 691, 787, 826
MboII GAAGA 6 cut(s) 170, 173, 179, 496, 640, 772
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 2 cut(s) 321, 753
MluCI AATT 6 cut(s) 20, 63, 460, 495, 514, 595
MlyI GAGTC 3 cut(s) 36, 320, 1039
MroI TCCGGA 1 cut(s) 30
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 2 cut(s) 89, 594
MspI CCGG 5 cut(s) 31, 122, 142, 330, 779
MspR9I CCNGG 3 cut(s) 122, 780, 869
MvaI CCWGG 1 cut(s) 869
MwoI GCNNNNNNNGC 4 cut(s) 311, 316, 735, 791
NciI CCSGG 2 cut(s) 122, 780
NdeII GATC 4 cut(s) 181, 691, 787, 826
NlaIII CATG 8 cut(s) 51, 86, 99, 314, 368, 557, 571, 1052
NlaIV GGNNCC 2 cut(s) 561, 586
NmuCI GTSAC 1 cut(s) 417
NsbI TGCGCA 1 cut(s) 700
NspI RCATGY 4 cut(s) 51, 99, 314, 557
PaeI GCATGC 1 cut(s) 314
PagI TCATGA 1 cut(s) 1048
PciI ACATGT 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 442
PkrI GCNGC 3 cut(s) 256, 304, 822
PleI GAGTC 3 cut(s) 35, 320, 1039
PpsI GAGTC 3 cut(s) 35, 320, 1039
PpuMI RGGWCCY 1 cut(s) 585
PscI ACATGT 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 594
Psp124BI GAGCTC 1 cut(s) 753
Psp1406I AACGTT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 867
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 561, 586
PspPI GGNCC 1 cut(s) 585
PspPPI RGGWCCY 1 cut(s) 585
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 7 cut(s) 138, 203, 209, 237, 355, 363, 906
RsaNI GTAC 7 cut(s) 137, 202, 208, 236, 354, 362, 905
SacI GAGCTC 1 cut(s) 753
SalI GTCGAC 1 cut(s) 933
SaqAI TTAA 2 cut(s) 89, 594
SatI GCNGC 3 cut(s) 255, 303, 821
Sau3AI GATC 4 cut(s) 181, 691, 787, 826
Sau96I GGNCC 1 cut(s) 585
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 3 cut(s) 36, 320, 1039
ScrFI CCNGG 3 cut(s) 122, 780, 869
SduI GDGCHC 2 cut(s) 321, 753
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 585
SpeI ACTAGT 3 cut(s) 56, 133, 970
SphI GCATGC 1 cut(s) 314
Sse9I AATT 6 cut(s) 20, 63, 460, 495, 514, 595
SsiI CCGC 2 cut(s) 255, 305
SspMI CTAG 5 cut(s) 57, 71, 134, 606, 971
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 3 cut(s) 120, 778, 867
TaiI ACGT 5 cut(s) 267, 359, 994, 1002, 1027
TaqI TCGA 2 cut(s) 450, 934
TasI AATT 6 cut(s) 20, 63, 460, 495, 514, 595
TatI WGTACW 5 cut(s) 136, 201, 207, 361, 904
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 2 cut(s) 89, 594
Tru9I TTAA 2 cut(s) 89, 594
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 2 cut(s) 302, 820
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 773, 1065
TspGWI ACGGA 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 585
VspI ATTAAT 1 cut(s) 594
XapI RAATTY 1 cut(s) 514
XceI RCATGY 4 cut(s) 51, 99, 314, 557
XmiI GTMKAC 1 cut(s) 934
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 5 cut(s) 57, 71, 134, 606, 971
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.