Rw4G011720

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000910
Physical Location & Seq
Reverse (-)
27765251 .. 27766267
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011720.1

Sequence Viewer

Length: 1017 bp
ATGGGTGAAGAAGACGAAGAGAGGGCTTGTGATCCTTTGAAAGACGACAAGTACAAGTACTCCCCATCTTTATTGTTGAGGAGGGTACTCACAGAGGAGTTGGCCGCCCAAGACCTTCACAGAAACCACAAAAACAACAAGCTTCTCGTCGCTGCGGTGCATGCTGTGCTCTTAGACTCCGGTTTTGTTCGCTTTAGTTCGGGTACGTCAGTACATAATGCCCTGTTAGAGTTAGGTTTCACCGAGTTCGGTTCGGTATCGGGTATGTCACATTCCTACACTTTGCCTGAGATTCTTATCGAACAAGATAATTGTGATTGTAGTAGTAATCGGAAGATGGAAGGAATTGTTTTGAAGTTTGAGAATTCAGGTAACTTTTCGTCTGACCAGAAAAGAACAAAACATGTGGCTCCTCGCATGGTGAAAGTTAGTGGGTCCTTGATTAATTCTGGTTCTAGGTTTGGGCAGAAGCACAAGAAGGTATGTTTGGAATTGGATGAGAATAAGTTTGCGCCGGCGATTGAGTTTTTTTGGGGAAATAATACGAGGAATACTGTGAATGATTTGCGATTTTGTGAGAGACAAGTTTGTGAGTTTTGGAAAATTGTCAAGGATGAGATTTCACTTCCATTGCTGATTGATCTTTGCGCAGAGGCCGGTTTGCCTGCTCCATTGTGCCTTATGAGCCTTCCTCCGGAGCTCAAAACGAAGATTTTGGTAGCAATGCCGGGTGCTGATCTTGCCAGAGTAGGGGGTGTTTGTAAGGAGCTGCGAGATCTTGCAAATGACAATGAGTTGTGGAAGCACAAGTTAGCCCAGGAGTTTGCTGAGGAGTTTTCTGGTACAAGAGAAGTAGAAGAACTCTGGAAAGTTACTTTTCGTCGACAATGGGAGACTAAAAGGGAGCAAGCAAAGAAACTAGTGGGAAAAAAGAGAGGACGTGAGAACGTTTATTGTTTCCATTGGCAACCACGTTCTAAATATCCTAAATGGAGTCATGAAACATATTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH UN_NPL4

Protein Analysis

338

Amino Acids

38.74

Weight (kDa)

7.98

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 229 - 269 1.9e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 649
AccI GTMKAC 1 cut(s) 883
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 2 cut(s) 105, 155
AclI AACGTT 1 cut(s) 948
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 6 cut(s) 53, 59, 87, 205, 213, 844
AfiI CCNNNNNNNGG 2 cut(s) 694, 750
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 40, 355
AhlI ACTAGT 1 cut(s) 919
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 1 cut(s) 816
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 3 cut(s) 142, 700, 769
AluI AGCT 3 cut(s) 142, 700, 769
Alw21I GWGCWC 2 cut(s) 171, 702
Alw26I GTCTC 2 cut(s) 574, 887
AlwI GGATC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 694
AoxI GGCC 2 cut(s) 102, 654
ApeKI GCWGC 2 cut(s) 152, 769
ApoI RAATTY 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 2 cut(s) 514, 650
AspS9I GGNCC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 3 cut(s) 17, 232, 433
AvaII GGWCC 1 cut(s) 435
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 171, 702
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 2 cut(s) 139, 756
BccI CCATC 2 cut(s) 73, 331
BciT130I CCWGG 1 cut(s) 818
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 574, 887
BcuI ACTAGT 1 cut(s) 919
BfaI CTAG 2 cut(s) 456, 920
BglII AGATCT 1 cut(s) 775
BisI GCNGC 3 cut(s) 105, 153, 770
BlsI GCNGC 3 cut(s) 106, 154, 771
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 729, 818
Bme18I GGWCC 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 411, 436
BmrFI CCNGG 2 cut(s) 729, 818
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 676, 708
Bpu10I CCTNAGC 1 cut(s) 828
BpuMI CCSGG 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 816
BsaWI WCCGGW 2 cut(s) 179, 694
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 750
Bse118I RCCGGY 2 cut(s) 514, 656
Bse3DI GCAATG 2 cut(s) 629, 729
Bse8I GATNNNNATC 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 694
BseBI CCWGG 1 cut(s) 818
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 2 cut(s) 502, 619
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 694, 750
BseMI GCAATG 2 cut(s) 629, 729
BseMII CTCAG 2 cut(s) 279, 819
BseRI GAGGAG 4 cut(s) 94, 110, 402, 845
BseXI GCAGC 2 cut(s) 139, 756
BshFI GGCC 2 cut(s) 104, 656
BsiHKAI GWGCWC 2 cut(s) 171, 702
BsiSI CCGG 5 cut(s) 180, 515, 657, 695, 728
BslI CCNNNNNNNGG 2 cut(s) 694, 750
BsmAI GTCTC 2 cut(s) 574, 887
BsnI GGCC 2 cut(s) 104, 656
Bsp1286I GDGCHC 2 cut(s) 171, 702
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 4 cut(s) 31, 640, 736, 775
BspACI CCGC 2 cut(s) 105, 155
BspANI GGCC 2 cut(s) 104, 656
BspCNI CTCAG 2 cut(s) 280, 820
BspEI TCCGGA 1 cut(s) 694
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 2 cut(s) 411, 436
BspPI GGATC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 629, 729
BsrFI RCCGGY 2 cut(s) 514, 656
BssAI RCCGGY 2 cut(s) 514, 656
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 4 cut(s) 31, 640, 736, 775
Bst2UI CCWGG 1 cut(s) 818
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 4 cut(s) 162, 516, 666, 909
BstDEI CTNAG 3 cut(s) 172, 288, 828
BstF5I GGATG 2 cut(s) 502, 619
BstHHI GCGC 2 cut(s) 514, 650
BstKTI GATC 4 cut(s) 34, 643, 739, 778
BstMAI GTCTC 2 cut(s) 574, 887
BstMBI GATC 4 cut(s) 31, 640, 736, 775
BstMWI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
BstNI CCWGG 1 cut(s) 818
BstNSI RCATGY 2 cut(s) 164, 407
BstSCI CCNGG 2 cut(s) 727, 816
BstV1I GCAGC 2 cut(s) 139, 756
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 2 cut(s) 104, 656
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 2 cut(s) 502, 619
Cac8I GCNNGC 4 cut(s) 162, 516, 666, 909
CciI TCATGA 1 cut(s) 997
CfoI GCGC 2 cut(s) 514, 650
Cfr10I RCCGGY 2 cut(s) 514, 656
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 6 cut(s) 52, 58, 86, 204, 212, 843
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 4 cut(s) 161, 404, 418, 998
CviJI RGCY 9 cut(s) 26, 104, 142, 410, 656, 687, 700, 769, 815
CviKI_1 RGCY 9 cut(s) 26, 104, 142, 410, 656, 687, 700, 769, 815
CviQI GTAC 6 cut(s) 52, 58, 86, 204, 212, 843
DdeI CTNAG 3 cut(s) 172, 288, 828
DpnI GATC 4 cut(s) 33, 642, 738, 777
DpnII GATC 4 cut(s) 31, 640, 736, 775
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 702
FaeI CATG 4 cut(s) 164, 407, 421, 1001
FaiI YATR 9 cut(s) 162, 216, 266, 405, 419, 484, 683, 999, 1006
FatI CATG 4 cut(s) 160, 403, 417, 997
FblI GTMKAC 1 cut(s) 883
Fnu4HI GCNGC 3 cut(s) 105, 153, 770
FokI GGATG 2 cut(s) 509, 626
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 3 cut(s) 105, 153, 770
FspBI CTAG 2 cut(s) 456, 920
FspI TGCGCA 1 cut(s) 649
GlaI GCGC 2 cut(s) 513, 649
GluI GCNGC 3 cut(s) 105, 153, 770
HaeIII GGCC 2 cut(s) 104, 656
HapII CCGG 5 cut(s) 180, 515, 657, 695, 728
HhaI GCGC 2 cut(s) 514, 650
Hin1II CATG 4 cut(s) 164, 407, 421, 1001
Hin6I GCGC 2 cut(s) 512, 648
HinP1I GCGC 2 cut(s) 512, 648
HincII GTYRAC 1 cut(s) 884
HindII GTYRAC 1 cut(s) 884
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 176, 292, 994
HpaII CCGG 5 cut(s) 180, 515, 657, 695, 728
HphI GGTGA 3 cut(s) 17, 232, 433
Hpy166II GTNNAC 1 cut(s) 884
Hpy188I TCNGA 2 cut(s) 333, 385
Hpy188III TCNNGA 3 cut(s) 695, 865, 998
Hpy8I GTNNAC 1 cut(s) 884
Hpy99I CGWCG 2 cut(s) 152, 885
HpyAV CCTTC 4 cut(s) 125, 335, 472, 698
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 4 cut(s) 206, 940, 948, 973
HpyCH4V TGCA 2 cut(s) 160, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
HpyF3I CTNAG 3 cut(s) 172, 288, 828
HpySE526I ACGT 4 cut(s) 206, 940, 948, 973
Hsp92II CATG 4 cut(s) 164, 407, 421, 1001
HspAI GCGC 2 cut(s) 512, 648
Kpn2I TCCGGA 1 cut(s) 694
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Kzo9I GATC 4 cut(s) 31, 640, 736, 775
LmnI GCTCC 5 cut(s) 415, 673, 697, 766, 904
Lsp1109I GCAGC 2 cut(s) 139, 756
MaeI CTAG 2 cut(s) 456, 920
MaeII ACGT 4 cut(s) 206, 940, 948, 973
MaeIII GTNAC 3 cut(s) 267, 371, 871
MalI GATC 4 cut(s) 33, 642, 738, 777
MboI GATC 4 cut(s) 31, 640, 736, 775
MboII GAAGA 6 cut(s) 20, 23, 29, 346, 721, 869
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 171, 702
MluCI AATT 6 cut(s) 310, 345, 364, 445, 491, 603
MlyI GAGTC 2 cut(s) 170, 1003
MreI CGCCGGCG 1 cut(s) 514
MroI TCCGGA 1 cut(s) 694
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 1 cut(s) 444
MspI CCGG 5 cut(s) 180, 515, 657, 695, 728
MspR9I CCNGG 2 cut(s) 729, 818
MvaI CCWGG 1 cut(s) 818
MwoI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
NaeI GCCGGC 1 cut(s) 516
NciI CCSGG 1 cut(s) 729
NdeII GATC 4 cut(s) 31, 640, 736, 775
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 4 cut(s) 164, 407, 421, 1001
NlaIV GGNNCC 2 cut(s) 411, 436
NmuCI GTSAC 1 cut(s) 267
NsbI TGCGCA 1 cut(s) 649
NspI RCATGY 2 cut(s) 164, 407
PaeI GCATGC 1 cut(s) 164
PagI TCATGA 1 cut(s) 997
PciI ACATGT 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 106, 154, 771
PleI GAGTC 2 cut(s) 170, 1002
PpsI GAGTC 2 cut(s) 170, 1002
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 702
Psp1406I AACGTT 1 cut(s) 948
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 816
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 2 cut(s) 411, 436
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 6 cut(s) 53, 59, 87, 205, 213, 844
RsaNI GTAC 6 cut(s) 52, 58, 86, 204, 212, 843
SacI GAGCTC 1 cut(s) 702
SalI GTCGAC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 3 cut(s) 105, 153, 770
Sau3AI GATC 4 cut(s) 31, 640, 736, 775
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 2 cut(s) 170, 1003
ScrFI CCNGG 2 cut(s) 729, 818
SduI GDGCHC 2 cut(s) 171, 702
SgrAI CRCCGGYG 1 cut(s) 514
SinI GGWCC 1 cut(s) 435
SpeI ACTAGT 1 cut(s) 919
SphI GCATGC 1 cut(s) 164
Sse9I AATT 6 cut(s) 310, 345, 364, 445, 491, 603
SsiI CCGC 2 cut(s) 105, 155
SspMI CTAG 2 cut(s) 456, 920
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 2 cut(s) 727, 816
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 4 cut(s) 209, 943, 951, 976
TaqI TCGA 2 cut(s) 300, 883
TasI AATT 6 cut(s) 310, 345, 364, 445, 491, 603
TatI WGTACW 3 cut(s) 51, 57, 211
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 2 cut(s) 152, 769
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 1014
VpaK11BI GGWCC 1 cut(s) 435
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 1 cut(s) 364
XceI RCATGY 2 cut(s) 164, 407
XmiI GTMKAC 1 cut(s) 883
XspI CTAG 2 cut(s) 456, 920
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.