MD10G1110400.v1.1

f-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
18165818 .. 18166165
348 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1110400.v1.1.491

Sequence Viewer

Length: 348 bp
ATGATCCGAATGTTGAACGACACAAAAGGACTTGTCGCTAAAGGAGAAGTTTTGGAACTGTGGAAAACTGTGAAGGATGAGATTGTGCTGCCGTTGGCGATCGATCTTTATGCGAACGCTTGTGTGCCGGCTCCGCCGAGGTTCATGCAGCTTCCGTCGGAGCTTCAAATGAAGATTTTGAGGTTGTTGCCCGGTGTGGATATTGCCTTGGTGAGTTGTGTGTGTAAGGAATTGAGGGATCTTGCTAACGATGAAGAACTGTGGAAGCAGAAGGTTTTTGATGAGTTTACTGCTGAGTTTCTTCTGATCAAACCTAAAGCAATATCAGTTTTCAATAATGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.09

Weight (kDa)

5.16

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 49 - 89 1.4e-09 F-box domain
F-box-like PF12937 50 - 92 1e-11 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 246
AgsI TTSAA 3 cut(s) 16, 167, 334
AluBI AGCT 2 cut(s) 151, 163
AluI AGCT 2 cut(s) 151, 163
AlwI GGATC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 88, 148
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 223
BbvI GCAGC 2 cut(s) 75, 160
BceAI ACGGC 1 cut(s) 76
BcgI CGANNNNNNTGC 4 cut(s) 92, 126, 127, 161
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 192
BisI GCNGC 2 cut(s) 89, 149
BlsI GCNGC 2 cut(s) 90, 150
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 137, 207
Bse118I RCCGGY 1 cut(s) 127
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 137, 207
BseGI GGATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 285
BseXI GCAGC 2 cut(s) 75, 160
Bsh1285I CGRYCG 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 128, 192
Bsp143I GATC 5 cut(s) 3, 99, 103, 238, 306
BspACI CCGC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 137, 207
BssMI GATC 5 cut(s) 3, 99, 103, 238, 306
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 60, 70, 261
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 5 cut(s) 6, 102, 106, 241, 309
BstMBI GATC 5 cut(s) 3, 99, 103, 238, 306
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 75, 160
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 102
CviAII CATG 2 cut(s) 145, 342
CviJI RGCY 3 cut(s) 131, 151, 163
CviKI_1 RGCY 3 cut(s) 131, 151, 163
DdeI CTNAG 1 cut(s) 294
DpnI GATC 5 cut(s) 5, 101, 105, 240, 308
DpnII GATC 5 cut(s) 3, 99, 103, 238, 306
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 148, 345
FaiI YATR 3 cut(s) 111, 146, 343
FatI CATG 2 cut(s) 144, 341
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 89, 149
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 89, 149
GluI GCNGC 2 cut(s) 89, 149
HapII CCGG 2 cut(s) 128, 192
Hin1II CATG 2 cut(s) 148, 345
HpaII CCGG 2 cut(s) 128, 192
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 3 cut(s) 8, 160, 306
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 67, 265
HpyCH4III ACNGT 3 cut(s) 60, 70, 261
HpyCH4V TGCA 2 cut(s) 148, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 148, 345
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 5 cut(s) 3, 99, 103, 238, 306
LmnI GCTCC 2 cut(s) 136, 160
LpnPI CCDG 2 cut(s) 141, 205
Lsp1109I GCAGC 2 cut(s) 75, 160
MalI GATC 5 cut(s) 5, 101, 105, 240, 308
MboI GATC 5 cut(s) 3, 99, 103, 238, 306
MboII GAAGA 3 cut(s) 184, 266, 293
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 132, 174, 228
Mph1103I ATGCAT 1 cut(s) 343
MroNI GCCGGC 1 cut(s) 127
MspI CCGG 2 cut(s) 128, 192
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 133
NaeI GCCGGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 192
NdeII GATC 5 cut(s) 3, 99, 103, 238, 306
NgoMIV GCCGGC 1 cut(s) 127
NlaIII CATG 2 cut(s) 148, 345
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 162
NsiI ATGCAT 1 cut(s) 343
PdiI GCCGGC 1 cut(s) 129
PkrI GCNGC 2 cut(s) 90, 150
Ple19I CGATCG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 132
PsuI RGATCY 1 cut(s) 238
PvuI CGATCG 1 cut(s) 102
SatI GCNGC 2 cut(s) 89, 149
Sau3AI GATC 5 cut(s) 3, 99, 103, 238, 306
ScrFI CCNGG 1 cut(s) 192
SetI ASST 6 cut(s) 143, 153, 165, 185, 276, 316
SgeI CNNG 9 cut(s) 44, 132, 140, 150, 157, 203, 204, 220, 254
Sse9I AATT 1 cut(s) 230
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 60, 70, 261
TaqI TCGA 1 cut(s) 102
TasI AATT 1 cut(s) 230
TseI GCWGC 2 cut(s) 88, 148
TspDTI ATGAA 3 cut(s) 133, 185, 267
TspGWI ACGGA 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.