RLG00000015154

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000910
Physical Location & Seq
Forward (+)
62326858 .. 62328078
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015154

Sequence Viewer

Length: 1065 bp
ATGGCCGAAGATCCGAGGTCGGGTTCGGAAACCCGAATTGGCGAAGGTTGTTCTGGTGTTGGAACTTCGATTGCCGAAGAGCCGAGGTCTGTAGTTTCGAATTCTGAAACCCTAATGGAGTCGGAAACCCTAATTGGCGAAGGGTCTTCTTCTGGTATGGAAATTGATGATGATGAGGAGTCGACTGGAGTGACTGATCGGTTTCATCTTCCGAAAGAATGGCCGGCAGTGGCTTACACGCTGTCCCTCTTGTATACATTGCCTGAGGTTTTGGAGAATCGGGGCAATGGCGGTGGTGGGGTTGAAGCTGTAGTGCTGAAGATTCAGACTTTGGGGCATTTTGTCAATGTCTATGGGTCGTTGGCCGGTGGCGGCGGTTCCGGGCATTATAGGGTGTCTTTGGATGTGAAGAGGTTTGCGCCAATGCTGGATTTTGTCTGGGAAAGCAGGAATGTGAGTGATAGTGAAGTGTTTGTGCCGGAAATTGAAATCTTTGAGTTTTGGAGGATTGTCAAGGATGGAATTACATACCCATTGCTGATTGATCTTTGTGCAAAGGCTGGTTTGCCCGAGCCGCCCAGCTTCATGTGCCTTCCTTCGGATCTCAAGATGAATATTTTGGAGAGGCTGTCTGGTGTTGACATTGCGAAAGTGGGATGTGCTTGTAAGGAGCTACAAAATCTAGCCAATAATGATGAGCTCTGGAAGCAGAAATTTCAGGAGGAGTTCAGGGAGGGCGCAGGAGGAATAGGTAACTGGAAGTTTCGATATGTTGGGAAGTGGGAGGATAGGGAGCGAGAGAAGAAGGCACTGGTCATGTGGAGAGATTGGAGAGAACATGTTAGGCCTCATCACTTCATCCCTATGAGAAGGGACCCAATAGTCCCATTTGTACCTGGTTTTCCTGGAATCATTAGGGATCCTCCAGGTTTTGGTGTCCCTGATCCTTTTGGACGACCACGGTTACCATACCCTCTTGGTGGTGGTCAGCCTGCAATCTTTCGGCATGGGAGGAGGCAGAATTTCTCTCCCAATTGCAATCTGGGAGGAGGATTTAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

355

Amino Acids

39.33

Weight (kDa)

5.23

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 196 - 236 2.7e-06 F-box domain
F-box-like PF12937 197 - 240 7.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 881
AccB7I CCANNNNNTGG 1 cut(s) 932
AccI GTMKAC 2 cut(s) 182, 254
AciI CCGC 4 cut(s) 291, 372, 375, 575
AclWI GGATC 5 cut(s) 5, 609, 914, 927, 938
AcoI YGGCCR 3 cut(s) 3, 221, 363
AcsI RAATTY 3 cut(s) 100, 713, 1021
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 1 cut(s) 894
AfiI CCNNNNNNNGG 4 cut(s) 20, 598, 932, 980
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 2 cut(s) 305, 488
AjnI CCWGG 3 cut(s) 895, 904, 925
AjuI GAANNNNNNNTTGG 4 cut(s) 21, 53, 117, 149
AluBI AGCT 4 cut(s) 308, 582, 673, 700
AluI AGCT 4 cut(s) 308, 582, 673, 700
Alw21I GWGCWC 1 cut(s) 702
AlwI GGATC 5 cut(s) 5, 609, 914, 927, 938
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 4 cut(s) 3, 221, 363, 845
ApoI RAATTY 3 cut(s) 100, 713, 1021
AspLEI GCGC 2 cut(s) 421, 740
AspS9I GGNCC 1 cut(s) 874
AsuC2I CCSGG 1 cut(s) 382
AsuII TTCGAA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 874
AxyI CCTNAGG 1 cut(s) 264
BamHI GGATCC 1 cut(s) 919
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 702
BccI CCATC 1 cut(s) 512
BciT130I CCWGG 3 cut(s) 897, 906, 927
BcnI CCSGG 1 cut(s) 382
BfaI CTAG 1 cut(s) 683
BfmI CTRYAG 2 cut(s) 90, 309
BisI GCNGC 2 cut(s) 373, 575
BlsI GCNGC 2 cut(s) 374, 576
Bme1390I CCNGG 4 cut(s) 382, 897, 906, 927
Bme18I GGWCC 1 cut(s) 874
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 4 cut(s) 379, 875, 876, 921
BmrFI CCNGG 4 cut(s) 382, 897, 906, 927
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 2 cut(s) 207, 909
Bpu14I TTCGAA 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 14, 83, 959
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 598, 932, 980
Bse118I RCCGGY 2 cut(s) 223, 365
Bse1I ACTGG 3 cut(s) 190, 761, 816
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 4 cut(s) 257, 292, 533, 642
BseBI CCWGG 3 cut(s) 897, 906, 927
BseDI CCNNGG 3 cut(s) 14, 83, 959
BseGI GGATG 4 cut(s) 409, 523, 662, 858
BseLI CCNNNNNNNGG 4 cut(s) 20, 598, 932, 980
BseMI GCAATG 4 cut(s) 257, 292, 533, 642
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 3 cut(s) 190, 761, 816
BseRI GAGGAG 4 cut(s) 191, 737, 1027, 1062
BseYI CCCAGC 1 cut(s) 578
BshFI GGCC 4 cut(s) 5, 223, 365, 847
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 4 cut(s) 224, 366, 381, 479
BslFI GGGAC 4 cut(s) 229, 869, 887, 923
BslI CCNNNNNNNGG 4 cut(s) 20, 598, 932, 980
BsmFI GGGAC 4 cut(s) 229, 869, 887, 923
BsnI GGCC 4 cut(s) 5, 223, 365, 847
BsoBI CYCGRG 1 cut(s) 569
Bsp119I TTCGAA 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 6 cut(s) 10, 196, 544, 601, 919, 943
BspACI CCGC 4 cut(s) 291, 372, 375, 575
BspANI GGCC 4 cut(s) 5, 223, 365, 847
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 4 cut(s) 379, 875, 876, 921
BspPI GGATC 5 cut(s) 5, 609, 914, 927, 938
BspQI GCTCTTC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 98
BsrDI GCAATG 4 cut(s) 257, 292, 533, 642
BsrFI RCCGGY 2 cut(s) 223, 365
BsrI ACTGG 3 cut(s) 190, 761, 816
BssAI RCCGGY 2 cut(s) 223, 365
BssECI CCNNGG 3 cut(s) 14, 83, 959
BssMI GATC 6 cut(s) 10, 196, 544, 601, 919, 943
BssNAI GTATAC 1 cut(s) 255
Bst1107I GTATAC 1 cut(s) 255
Bst2UI CCWGG 3 cut(s) 897, 906, 927
Bst4CI ACNGT 1 cut(s) 963
Bst6I CTCTTC 2 cut(s) 72, 404
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 225, 993
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 959
BstEII GGTNACC 1 cut(s) 963
BstF5I GGATG 4 cut(s) 409, 523, 662, 858
BstHHI GCGC 2 cut(s) 421, 740
BstKTI GATC 6 cut(s) 13, 199, 547, 604, 922, 946
BstMBI GATC 6 cut(s) 10, 196, 544, 601, 919, 943
BstMWI GCNNNNNNNGC 3 cut(s) 574, 588, 706
BstNI CCWGG 3 cut(s) 897, 906, 927
BstNSI RCATGY 1 cut(s) 842
BstPI GGTNACC 1 cut(s) 963
BstSCI CCNGG 4 cut(s) 380, 895, 904, 925
BstSFI CTRYAG 2 cut(s) 90, 309
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 3 cut(s) 10, 601, 919
BstYI RGATCY 3 cut(s) 10, 601, 919
BstZ17I GTATAC 1 cut(s) 255
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 4 cut(s) 5, 223, 365, 847
BtgI CCRYGG 1 cut(s) 959
BtsCI GGATG 4 cut(s) 409, 523, 662, 858
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 234, 809
Cac8I GCNNGC 2 cut(s) 225, 993
CfoI GCGC 2 cut(s) 421, 740
Cfr10I RCCGGY 2 cut(s) 223, 365
Cfr13I GGNCC 1 cut(s) 874
CsiI ACCWGGT 1 cut(s) 895
Csp6I GTAC 1 cut(s) 893
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 4 cut(s) 586, 817, 839, 1007
CviQI GTAC 1 cut(s) 893
DdeI CTNAG 1 cut(s) 264
DpnI GATC 6 cut(s) 12, 198, 546, 603, 921, 945
DpnII GATC 6 cut(s) 10, 196, 544, 601, 919, 943
DrdI GACNNNNNNGTC 1 cut(s) 881
DseDI GACNNNNNNGTC 1 cut(s) 881
EaeI YGGCCR 3 cut(s) 3, 221, 363
Eam1104I CTCTTC 2 cut(s) 72, 404
EarI CTCTTC 2 cut(s) 72, 404
Ecl136II GAGCTC 1 cut(s) 700
Eco147I AGGCCT 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 569
Eco91I GGTNACC 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 874
EcoO65I GGTNACC 1 cut(s) 963
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 895, 904, 925
EcoT38I GRGCYC 1 cut(s) 702
FaeI CATG 4 cut(s) 589, 820, 842, 1010
FaqI GGGAC 4 cut(s) 229, 869, 887, 923
FatI CATG 4 cut(s) 585, 816, 838, 1006
FblI GTMKAC 2 cut(s) 182, 254
Fnu4HI GCNGC 2 cut(s) 373, 575
FokI GGATG 4 cut(s) 416, 530, 669, 845
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 2 cut(s) 373, 575
FspBI CTAG 1 cut(s) 683
GlaI GCGC 2 cut(s) 420, 739
GluI GCNGC 2 cut(s) 373, 575
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 2 cut(s) 207, 909
HaeIII GGCC 4 cut(s) 5, 223, 365, 847
HapII CCGG 4 cut(s) 224, 366, 381, 479
HhaI GCGC 2 cut(s) 421, 740
Hin1II CATG 4 cut(s) 589, 820, 842, 1010
Hin6I GCGC 2 cut(s) 419, 738
HinP1I GCGC 2 cut(s) 419, 738
HincII GTYRAC 2 cut(s) 183, 640
HindII GTYRAC 2 cut(s) 183, 640
HinfI GANTC 5 cut(s) 119, 179, 277, 322, 909
HpaII CCGG 4 cut(s) 224, 366, 381, 479
Hpy166II GTNNAC 3 cut(s) 183, 255, 640
Hpy188I TCNGA 7 cut(s) 15, 28, 106, 124, 213, 327, 601
Hpy188III TCNNGA 3 cut(s) 607, 703, 719
Hpy8I GTNNAC 3 cut(s) 183, 255, 640
HpyAV CCTTC 6 cut(s) 38, 134, 602, 606, 799, 864
HpyCH4III ACNGT 1 cut(s) 963
HpyCH4V TGCA 3 cut(s) 554, 995, 1038
HpyF10VI GCNNNNNNNGC 3 cut(s) 574, 588, 706
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 4 cut(s) 589, 820, 842, 1010
HspAI GCGC 2 cut(s) 419, 738
KflI GGGWCCC 1 cut(s) 874
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 6 cut(s) 10, 196, 544, 601, 919, 943
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 670, 793
MabI ACCWGGT 1 cut(s) 895
MaeI CTAG 1 cut(s) 683
MaeIII GTNAC 3 cut(s) 190, 752, 963
MalI GATC 6 cut(s) 12, 198, 546, 603, 921, 945
MboI GATC 6 cut(s) 10, 196, 544, 601, 919, 943
MboII GAAGA 8 cut(s) 20, 89, 138, 141, 200, 331, 421, 814
MfeI CAATTG 1 cut(s) 1033
MflI RGATCY 3 cut(s) 10, 601, 919
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 9 cut(s) 36, 100, 132, 162, 483, 522, 713, 1021, 1033
MlyI GAGTC 2 cut(s) 128, 188
MmeI TCCRAC 2 cut(s) 40, 102
MroNI GCCGGC 1 cut(s) 223
MslI CAYNNNNRTG 1 cut(s) 863
MspI CCGG 4 cut(s) 224, 366, 381, 479
MspR9I CCNGG 4 cut(s) 382, 897, 906, 927
MunI CAATTG 1 cut(s) 1033
MvaI CCWGG 3 cut(s) 897, 906, 927
MwoI GCNNNNNNNGC 3 cut(s) 574, 588, 706
NaeI GCCGGC 1 cut(s) 225
NciI CCSGG 1 cut(s) 382
NdeII GATC 6 cut(s) 10, 196, 544, 601, 919, 943
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 4 cut(s) 589, 820, 842, 1010
NlaIV GGNNCC 4 cut(s) 379, 875, 876, 921
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 842
NspV TTCGAA 1 cut(s) 98
PceI AGGCCT 1 cut(s) 847
PciI ACATGT 1 cut(s) 838
PciSI GCTCTTC 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 225
PfeI GAWTC 3 cut(s) 277, 322, 909
PflMI CCANNNNNTGG 1 cut(s) 932
PfoI TCCNGGA 1 cut(s) 904
PkrI GCNGC 2 cut(s) 374, 576
PleI GAGTC 2 cut(s) 127, 187
PpsI GAGTC 2 cut(s) 127, 187
PpuMI RGGWCCY 1 cut(s) 874
PscI ACATGT 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 874
Psp6I CCWGG 3 cut(s) 895, 904, 925
PspEI GGTNACC 1 cut(s) 963
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 3 cut(s) 895, 904, 925
PspN4I GGNNCC 4 cut(s) 379, 875, 876, 921
PspPI GGNCC 1 cut(s) 874
PspPPI RGGWCCY 1 cut(s) 874
PsuI RGATCY 3 cut(s) 10, 601, 919
RsaI GTAC 1 cut(s) 894
RsaNI GTAC 1 cut(s) 893
RseI CAYNNNNRTG 1 cut(s) 863
SacI GAGCTC 1 cut(s) 702
SalI GTCGAC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 72
SatI GCNGC 2 cut(s) 373, 575
Sau3AI GATC 6 cut(s) 10, 196, 544, 601, 919, 943
Sau96I GGNCC 1 cut(s) 874
SchI GAGTC 2 cut(s) 128, 188
ScrFI CCNGG 4 cut(s) 382, 897, 906, 927
SduI GDGCHC 1 cut(s) 702
SexAI ACCWGGT 1 cut(s) 895
SfcI CTRYAG 2 cut(s) 90, 309
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 1 cut(s) 874
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 9 cut(s) 36, 100, 132, 162, 483, 522, 713, 1021, 1033
SseBI AGGCCT 1 cut(s) 847
SsiI CCGC 4 cut(s) 291, 372, 375, 575
SspI AATATT 1 cut(s) 616
SspMI CTAG 1 cut(s) 683
SstI GAGCTC 1 cut(s) 702
StuI AGGCCT 1 cut(s) 847
StyD4I CCNGG 4 cut(s) 380, 895, 904, 925
TaaI ACNGT 1 cut(s) 963
TaqI TCGA 4 cut(s) 68, 98, 182, 766
TasI AATT 9 cut(s) 36, 100, 132, 162, 483, 522, 713, 1021, 1033
TauI GCSGC 2 cut(s) 375, 577
TfiI GAWTC 3 cut(s) 277, 322, 909
TscAI CASTG 2 cut(s) 234, 816
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 4 cut(s) 194, 574, 626, 847
TspRI CASTG 2 cut(s) 234, 816
Van91I CCANNNNNTGG 1 cut(s) 932
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 3 cut(s) 100, 713, 1021
XceI RCATGY 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 1039
XmiI GTMKAC 2 cut(s) 182, 254
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.