RchiOBHm_Chr4g0395411

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000910
Physical Location & Seq
Reverse (-)
11127168 .. 11127728
561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36785

Sequence Viewer

Length: 561 bp
ATGGTGTTTCCCAGTTTGAGTCCATTCTTTGCGGCCTACCGTGACGGTTACCCTGTATGGTTGGATGAGAAGAAGTTTGCGCCTGCCATGATCGATTTTGTTTGGGGAAATAATAGATTTGATGATTGTCATGTGAATGTGGGATTACTTGAGAGACAAGTTACGGAGATTAGAAATATTGTGAAGAATGAAATTGCATTGCCATTACTAATAGATCTTTGTGCAGTGGCCGGTTTGCGTGCTCCACCGTGCCTTATGGGCCTTCCTGCGGAGCTTGGAGCAAAGATTTTGAAGTCGCTGCCTGGTGAGGATATTGCTAGAGTGTCGTGTGTCTGTAAGGAGCTGCGAAATCTGGCTAATGATGATGAGTTGTGGAAGCAAAAGTTTGCTGAGGAGTTTGGCTTAAGTGGGAATGAAGTTGGAGACCGCAAGTCTTGGAAGTCCTGGTTTGTTGTAAACTGGAAGAACAAGAAGGAAACAAATAAAGAGAAGGGAAAAATTATAGTGGGATATTGGTGGCGCCGGAAAAAATATGATAGAGAGTGGCCTCCTTTGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

186

Amino Acids

21.53

Weight (kDa)

8.93

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 87 - 126 3.8e-08 F-box domain
F-box-like PF12937 88 - 129 3.2e-11 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 519
AciI CCGC 3 cut(s) 32, 269, 427
AcoI YGGCCR 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 520
AfiI CCNNNNNNNGG 1 cut(s) 268
AflII CTTAAG 1 cut(s) 403
AgsI TTSAA 1 cut(s) 292
AhdI GACNNNNNGTC 1 cut(s) 430
AjnI CCWGG 2 cut(s) 301, 443
AluBI AGCT 2 cut(s) 274, 343
AluI AGCT 2 cut(s) 274, 343
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 148, 417
AoxI GGCC 4 cut(s) 33, 228, 259, 545
ApeKI GCWGC 2 cut(s) 298, 343
AspLEI GCGC 3 cut(s) 82, 522, 558
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 285, 330
BciT130I CCWGG 2 cut(s) 303, 445
BcoDI GTCTC 2 cut(s) 148, 417
BfaI CTAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 523
BfrI CTTAAG 1 cut(s) 403
BglI GCCNNNNNGGC 1 cut(s) 258
BglII AGATCT 1 cut(s) 214
BisI GCNGC 3 cut(s) 33, 299, 344
BlsI GCNGC 3 cut(s) 34, 300, 345
Bme1390I CCNGG 2 cut(s) 303, 445
BmeRI GACNNNNNGTC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 521
BmrFI CCNGG 2 cut(s) 303, 445
BmrI ACTGGG 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 6
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 12, 464
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 2 cut(s) 303, 445
BseCI ATCGAT 1 cut(s) 93
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 12, 464
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 285, 330
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 4 cut(s) 35, 230, 261, 547
BshNI GGYRCC 1 cut(s) 519
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 231, 523
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 148, 417
BsnI GGCC 4 cut(s) 35, 230, 261, 547
Bso31I GGTCTC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 90, 214
BspACI CCGC 3 cut(s) 32, 269, 427
BspANI GGCC 4 cut(s) 35, 230, 261, 547
BspCNI CTCAG 1 cut(s) 382
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 2 cut(s) 12, 464
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 2 cut(s) 90, 214
BssNI GRCGYC 1 cut(s) 520
Bst2UI CCWGG 2 cut(s) 303, 445
Bst4CI ACNGT 3 cut(s) 41, 47, 249
BstACI GRCGYC 1 cut(s) 520
BstAFI CTTAAG 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 84, 240
BstDEI CTNAG 1 cut(s) 390
BstEII GGTNACC 1 cut(s) 47
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 523
BstHHI GCGC 3 cut(s) 82, 522, 558
BstKTI GATC 2 cut(s) 93, 217
BstMAI GTCTC 2 cut(s) 148, 417
BstMBI GATC 2 cut(s) 90, 214
BstMWI GCNNNNNNNGC 2 cut(s) 258, 553
BstNI CCWGG 2 cut(s) 303, 445
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 301, 443
BstV1I GCAGC 2 cut(s) 285, 330
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 4 cut(s) 35, 230, 261, 547
BsuTUI ATCGAT 1 cut(s) 93
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 84, 240
CfoI GCGC 3 cut(s) 82, 522, 558
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 93
CviAII CATG 2 cut(s) 88, 131
CviJI RGCY 8 cut(s) 35, 230, 261, 274, 343, 356, 402, 547
CviKI_1 RGCY 8 cut(s) 35, 230, 261, 274, 343, 356, 402, 547
DdeI CTNAG 1 cut(s) 390
DinI GGCGCC 1 cut(s) 521
DpnI GATC 2 cut(s) 92, 216
DpnII GATC 2 cut(s) 90, 214
DriI GACNNNNNGTC 1 cut(s) 430
EaeI YGGCCR 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 47
EcoO65I GGTNACC 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 301, 443
EgeI GGCGCC 1 cut(s) 521
EheI GGCGCC 1 cut(s) 521
FaeI CATG 2 cut(s) 91, 134
FaiI YATR 6 cut(s) 58, 89, 132, 257, 503, 534
FatI CATG 2 cut(s) 87, 130
Fnu4HI GCNGC 3 cut(s) 33, 299, 344
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 33, 299, 344
FspBI CTAG 1 cut(s) 318
GlaI GCGC 3 cut(s) 81, 521, 557
GluI GCNGC 3 cut(s) 33, 299, 344
HaeII RGCGCY 1 cut(s) 523
HaeIII GGCC 4 cut(s) 35, 230, 261, 547
HapII CCGG 2 cut(s) 231, 523
HhaI GCGC 3 cut(s) 82, 522, 558
Hin1I GRCGYC 1 cut(s) 520
Hin1II CATG 2 cut(s) 91, 134
Hin6I GCGC 3 cut(s) 80, 520, 556
HinP1I GCGC 3 cut(s) 80, 520, 556
HinfI GANTC 1 cut(s) 19
HpaII CCGG 2 cut(s) 231, 523
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 457
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 3 cut(s) 272, 466, 484
HpyCH4III ACNGT 3 cut(s) 41, 47, 249
HpyCH4V TGCA 2 cut(s) 197, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 553
HpyF3I CTNAG 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 520
Hsp92II CATG 2 cut(s) 91, 134
HspAI GCGC 3 cut(s) 80, 520, 556
KasI GGCGCC 1 cut(s) 519
Kzo9I GATC 2 cut(s) 90, 214
LmnI GCTCC 4 cut(s) 247, 271, 278, 340
Lsp1109I GCAGC 2 cut(s) 285, 330
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 41, 47, 160
MalI GATC 2 cut(s) 92, 216
MboI GATC 2 cut(s) 90, 214
MboII GAAGA 3 cut(s) 82, 196, 475
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 2 cut(s) 192, 498
Mly113I GGCGCC 1 cut(s) 520
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 2 cut(s) 42, 400
MnlI CCTC 3 cut(s) 301, 385, 558
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 403
MspI CCGG 2 cut(s) 231, 523
MspR9I CCNGG 2 cut(s) 303, 445
MvaI CCWGG 2 cut(s) 303, 445
MwoI GCNNNNNNNGC 2 cut(s) 258, 553
NarI GGCGCC 1 cut(s) 520
NdeII GATC 2 cut(s) 90, 214
NlaIII CATG 2 cut(s) 91, 134
NlaIV GGNNCC 1 cut(s) 521
NmuCI GTSAC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 34, 300, 345
PleI GAGTC 1 cut(s) 27
PluTI GGCGCC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 301, 443
PspEI GGTNACC 1 cut(s) 47
PspGI CCWGG 2 cut(s) 301, 443
PspN4I GGNNCC 1 cut(s) 521
PspPI GGNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 3 cut(s) 33, 299, 344
Sau3AI GATC 2 cut(s) 90, 214
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 303, 445
SduI GDGCHC 1 cut(s) 244
SetI ASST 2 cut(s) 276, 345
SfoI GGCGCC 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 149, 403
SmoI CTYRAG 2 cut(s) 149, 403
Sse9I AATT 2 cut(s) 192, 498
SsiI CCGC 3 cut(s) 32, 269, 427
SspDI GGCGCC 1 cut(s) 519
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 301, 443
TaaI ACNGT 3 cut(s) 41, 47, 249
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 192, 498
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 298, 343
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 204, 429
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 231
Vha464I CTTAAG 1 cut(s) 403
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.