Rorug04G0078900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000910
Physical Location & Seq
Reverse (-)
12119477 .. 12119758
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0078900.1

Sequence Viewer

Length: 282 bp
ATGAAGATGAGTTCAATGAAATGCAAGCGTGTCGCAATTGCTTCCATTGCGAAATTACGCAGTGTTAAGGTCGAATCGGAGAGGAGCGTTGAGGAGGTAGTCGGATCCAGTGGTGATTTGGCTCCTCAGAAGCGGAACTTGAGGTCCGATTCGTCGTCGCCGATGAAGTGTAAATCGGCTCGTCGGCGCCTCAGTGCTTGCACCAAGACTCCTGCAAATGTGAGAGAGAGAGAGAGGAGACAAAGTGGCAGTGGCTGTGGCTGTAATTTATTAATTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

93

Amino Acids

10.13

Weight (kDa)

10.49

Isoelectric Point (pI)

103.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 186
AciI CCGC 1 cut(s) 133
AclWI GGATC 2 cut(s) 99, 112
AcyI GRCGYC 1 cut(s) 187
AgsI TTSAA 1 cut(s) 15
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 99, 112
AlwNI CAGNNNCTG 1 cut(s) 255
AseI ATTAAT 1 cut(s) 272
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 144
BamHI GGATCC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcoDI GTCTC 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 106, 123, 188
BpuEI CTTGAG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 187
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 229, 259
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 140, 205
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 4 cut(s) 97, 107, 114, 250
BshNI GGYRCC 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 232
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 139, 204
BspLI GGNNCC 3 cut(s) 106, 123, 188
BspPI GGATC 2 cut(s) 99, 112
BspT107I GGYRCC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 108
BssMI GATC 1 cut(s) 104
BssNI GRCGYC 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 26, 199
BstDEI CTNAG 2 cut(s) 126, 191
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BtsI GCAGTG 2 cut(s) 67, 256
BtsIMutI CAGTG 4 cut(s) 67, 115, 199, 256
Cac8I GCNNGC 2 cut(s) 26, 199
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 144
CviJI RGCY 4 cut(s) 122, 179, 255, 261
CviKI_1 RGCY 4 cut(s) 122, 179, 255, 261
DdeI CTNAG 2 cut(s) 126, 191
DinI GGCGCC 1 cut(s) 188
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 188
EheI GGCGCC 1 cut(s) 188
FalI AAGNNNNNCTT 2 cut(s) 122, 154
GlaI GCGC 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 190
HhaI GCGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 187
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 3 cut(s) 74, 149, 208
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 4 cut(s) 79, 104, 129, 148
Hpy99I CGWCG 3 cut(s) 157, 160, 186
HpyCH4V TGCA 3 cut(s) 24, 201, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 126, 191
Hsp92I GRCGYC 1 cut(s) 187
HspAI GCGC 1 cut(s) 187
KasI GGCGCC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 84, 127
LpnPI CCDG 2 cut(s) 121, 225
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 104
MluCI AATT 4 cut(s) 36, 53, 265, 273
Mly113I GGCGCC 1 cut(s) 187
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 7 cut(s) 75, 85, 88, 135, 135, 200, 228
MseI TTAA 2 cut(s) 66, 272
MunI CAATTG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 47
NarI GGCGCC 1 cut(s) 187
NdeII GATC 1 cut(s) 104
NlaIV GGNNCC 3 cut(s) 106, 123, 188
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 2 cut(s) 74, 149
PleI GAGTC 1 cut(s) 202
PluTI GGCGCC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 272
PspN4I GGNNCC 3 cut(s) 106, 123, 188
PspPI GGNCC 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 2 cut(s) 66, 272
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 1 cut(s) 202
SetI ASST 3 cut(s) 72, 99, 146
SfoI GGCGCC 1 cut(s) 188
SgeI CNNG 8 cut(s) 37, 41, 120, 151, 192, 210, 217, 224
SinI GGWCC 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 4 cut(s) 36, 53, 265, 273
SsiI CCGC 1 cut(s) 133
SspDI GGCGCC 1 cut(s) 186
TaqI TCGA 1 cut(s) 72
TasI AATT 4 cut(s) 36, 53, 265, 273
TfiI GAWTC 2 cut(s) 74, 149
Tru1I TTAA 2 cut(s) 66, 272
Tru9I TTAA 2 cut(s) 66, 272
TscAI CASTG 4 cut(s) 67, 115, 199, 256
TspDTI ATGAA 3 cut(s) 17, 32, 179
TspRI CASTG 4 cut(s) 67, 115, 199, 256
VpaK11BI GGWCC 1 cut(s) 144
VspI ATTAAT 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.