Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004598.1

Orthogroup ID

OG0000910

Physical Location & Seq

Genomic Coordinates Reverse (-)

7220 .. 8029

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004598.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atggaaatcgatgatattggttctgataacaggcactcggtgcacgactccttgaggagagttctgagggagaaactgactgataaccaccctggtaataagctcaagatattgaaattagtggtacatgtggctctcttagagtccggttttgtgcggttcaacccaggttcagtttccggtaaatcggttttctatactttgcctgagattctacaaaatgatggtgaggttattgaagggattgtgatggtgtttcccagtttgagtccattctttgcggcctaccgtgacggttaccctgtatggttggatgagaagaagtttgcgcctgccatgatcgattttgtttggggaaataatagatttgatgattgtcatgtgaatgggggattacttgagagacaagttatggagattagaaatattgtgaagaatgaaattgcattgccattactaatagatctttgtgcagtcgccggtttgcgtgctccaccgtgccttatgggccttcctgcggagcttggagcaaagattttgaagtcgctgcctggtgaggatattgctagagtgtcgtgtgtctgtaaggagctgcgaaatctggctaatgatgatgagttgtggaagcaaaagtttgccgaggagtttgccttaagtgggaatgaagttggagaccgcaagtcttggaagtcctggtttgttgtaaactggaagaacaagaaggaaacaaataaagagaagggaaaaattatagtgggatattggtggcgccggaaaaaatatgatagagagtggcctcctttgcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like HLH

Protein Analysis

269

Amino Acids

30.78

Weight (kDa)

8.5

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23770 AT1G23780 AT1G70360 AT1G70360
fragaria_vesca	FvH4_2g03310 FvH4_4g04631 FvH4_5g20811
malus_domestica	MD05G1106300.v1.1 MD10G1110300.v1.1 MD10G1110400.v1.1 MD10G1110600.v1.1 MD10G1110700.v1.1 MD10G1175800.v1.1
prunus_persica	Prupe.8G150500_v2.0.a1
pyrus_communis	pycom05g10350 pycom10g09580 pycom10g09590 pycom16g16890
rosa_chinensis	RchiOBHm_Chr4g0395411 RchiOBHm_Chr4g0407371 RchiOBHm_Chr4g0407381 RchiOBHm_Chr4g0407391 RchiOBHm_Chr6g0248431
rosa_laevigata	RLG00000015154
rosa_multiflora	Rmu_sc0002553.1_g000006 Rmu_sc0003402.1_g000015 Rmu_sc0003402.1_g000017 Rmu_sc0003402.1_g000018 Rmu_sc0004598.1_g000002 Rmu_sc0010817.1_g000012 Rmu_sc0014661.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351910 Rroxscaffold_5G00351990 Rroxscaffold_5G00352000 Rroxscaffold_6G00426810
rosa_rugosa	Rorug03G0357500 Rorug04G0078800 Rorug04G0078900 Rorug04G0079100 Rorug04G0081200 Rorug05G0531100
rosa_samantha	Rh4AG143800 Rh4AG143900 Rh4BG058200 Rh4BG141600 Rh4BG141900 Rh4BG142000 Rh4CG063700 Rh4CG150100 Rh4CG150200 Rh4CG150400 Rh4DG054800 Rh4DG137700 Rh4DG137900 Rh4DG138100 Rh6AG046800 Rh6BG043500 Rh6CG040200 Rh6DG036700
rosa_wichuraiana	Rw0G003310 Rw0G007650 Rw4G011690 Rw4G011710 Rw4G011720 Rw6G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	768
AciI	CCGC	4 cut(s)	157, 281, 518, 676
AcyI	GRCGYC	1 cut(s)	769
AdeI	CACNNNGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	517, 657
AflII	CTTAAG	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	115, 163, 239, 541
AhdI	GACNNNNNGTC	1 cut(s)	679
AjnI	CCWGG	4 cut(s)	91, 166, 550, 692
AluBI	AGCT	3 cut(s)	103, 523, 592
AluI	AGCT	3 cut(s)	103, 523, 592
Alw21I	GWGCWC	2 cut(s)	45, 493
Alw26I	GTCTC	2 cut(s)	397, 666
Alw44I	GTGCAC	1 cut(s)	41
AoxI	GGCC	3 cut(s)	282, 508, 794
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	547, 592
AspLEI	GCGC	3 cut(s)	331, 771, 807
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	239, 566
BaeGI	GKGCMC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	768
Bbv12I	GWGCWC	2 cut(s)	45, 493
BbvI	GCAGC	2 cut(s)	534, 579
BccI	CCATC	2 cut(s)	218, 244
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	4 cut(s)	93, 168, 552, 694
BcoDI	GTCTC	2 cut(s)	397, 666
BfaI	CTAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	772
BfrI	CTTAAG	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	507
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	3 cut(s)	282, 548, 593
BlsI	GCNGC	3 cut(s)	283, 549, 594
Bme1390I	CCNGG	4 cut(s)	93, 168, 552, 694
BmeRI	GACNNNNNGTC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	4 cut(s)	93, 168, 552, 694
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpuEI	CTTGAG	3 cut(s)	73, 89, 419
Bsa29I	ATCGAT	2 cut(s)	9, 342
BsaHI	GRCGYC	1 cut(s)	769
BsaI	GGTCTC	1 cut(s)	666
BsaJI	CCNNGG	3 cut(s)	91, 166, 639
BsaWI	WCCGGW	2 cut(s)	146, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 657
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	261, 713
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	4 cut(s)	93, 168, 552, 694
BseCI	ATCGAT	2 cut(s)	9, 342
BseDI	CCNNGG	3 cut(s)	91, 166, 639
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	517, 657
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	56, 198
BseNI	ACTGG	2 cut(s)	261, 713
BseRI	GAGGAG	2 cut(s)	70, 656
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	534, 579
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	3 cut(s)	284, 510, 796
BshNI	GGYRCC	1 cut(s)	768
BshVI	ATCGAT	2 cut(s)	9, 342
BsiHKAI	GWGCWC	2 cut(s)	45, 493
BsiSI	CCGG	4 cut(s)	147, 180, 480, 772
BslI	CCNNNNNNNGG	2 cut(s)	517, 657
BsmAI	GTCTC	2 cut(s)	397, 666
BsnI	GGCC	3 cut(s)	284, 510, 796
Bso31I	GGTCTC	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	45, 493
Bsp143I	GATC	2 cut(s)	339, 463
BspACI	CCGC	4 cut(s)	157, 281, 518, 676
BspANI	GGCC	3 cut(s)	284, 510, 796
BspCNI	CTCAG	2 cut(s)	57, 199
BspDI	ATCGAT	2 cut(s)	9, 342
BspLI	GGNNCC	1 cut(s)	770
BspT107I	GGYRCC	1 cut(s)	768
BspTI	CTTAAG	1 cut(s)	652
BspTNI	GGTCTC	1 cut(s)	666
BsrDI	GCAATG	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	261, 713
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	3 cut(s)	91, 166, 639
BssMI	GATC	2 cut(s)	339, 463
BssNI	GRCGYC	1 cut(s)	769
Bst2UI	CCWGG	4 cut(s)	93, 168, 552, 694
Bst4CI	ACNGT	3 cut(s)	290, 296, 498
BstACI	GRCGYC	1 cut(s)	769
BstAFI	CTTAAG	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	333, 489
BstDEI	CTNAG	3 cut(s)	65, 139, 207
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	772
BstHHI	GCGC	3 cut(s)	331, 771, 807
BstKTI	GATC	2 cut(s)	342, 466
BstMAI	GTCTC	2 cut(s)	397, 666
BstMBI	GATC	2 cut(s)	339, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 507, 802
BstNI	CCWGG	4 cut(s)	93, 168, 552, 694
BstNSI	RCATGY	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	4 cut(s)	91, 166, 550, 692
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	534, 579
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
Bsu15I	ATCGAT	2 cut(s)	9, 342
BsuRI	GGCC	3 cut(s)	284, 510, 796
BsuTUI	ATCGAT	2 cut(s)	9, 342
BtsCI	GGATG	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	333, 489
CfoI	GCGC	3 cut(s)	331, 771, 807
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	508
ClaI	ATCGAT	2 cut(s)	9, 342
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	3 cut(s)	128, 337, 380
CviJI	RGCY	8 cut(s)	103, 134, 284, 510, 523, 592, 605, 796
CviKI_1	RGCY	8 cut(s)	103, 134, 284, 510, 523, 592, 605, 796
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	65, 139, 207
DinI	GGCGCC	1 cut(s)	770
DpnI	GATC	2 cut(s)	341, 465
DpnII	GATC	2 cut(s)	339, 463
DraIII	CACNNNGTG	1 cut(s)	40
DriI	GACNNNNNGTC	1 cut(s)	679
Eam1105I	GACNNNNNGTC	1 cut(s)	679
Eco31I	GGTCTC	1 cut(s)	666
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoRII	CCWGG	4 cut(s)	91, 166, 550, 692
EgeI	GGCGCC	1 cut(s)	770
EheI	GGCGCC	1 cut(s)	770
FaeI	CATG	3 cut(s)	131, 340, 383
FaiI	YATR	9 cut(s)	129, 198, 307, 338, 381, 413, 506, 752, 783
FatI	CATG	3 cut(s)	127, 336, 379
Fnu4HI	GCNGC	3 cut(s)	282, 548, 593
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	282, 548, 593
FspBI	CTAG	1 cut(s)	567
GlaI	GCGC	3 cut(s)	330, 770, 806
GluI	GCNGC	3 cut(s)	282, 548, 593
HaeII	RGCGCY	1 cut(s)	772
HaeIII	GGCC	3 cut(s)	284, 510, 796
HapII	CCGG	4 cut(s)	147, 180, 480, 772
HhaI	GCGC	3 cut(s)	331, 771, 807
Hin1I	GRCGYC	1 cut(s)	769
Hin1II	CATG	3 cut(s)	131, 340, 383
Hin6I	GCGC	3 cut(s)	329, 769, 805
HinP1I	GCGC	3 cut(s)	329, 769, 805
HinfI	GANTC	4 cut(s)	47, 143, 211, 268
HpaII	CCGG	4 cut(s)	147, 180, 480, 772
HphI	GGTGA	2 cut(s)	239, 566
Hpy166II	GTNNAC	2 cut(s)	43, 706
Hpy188I	TCNGA	2 cut(s)	25, 66
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	43, 706
HpyAV	CCTTC	4 cut(s)	233, 521, 715, 733
HpyCH4III	ACNGT	3 cut(s)	290, 296, 498
HpyCH4V	TGCA	3 cut(s)	43, 446, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 507, 802
HpyF3I	CTNAG	3 cut(s)	65, 139, 207
Hsp92I	GRCGYC	1 cut(s)	769
Hsp92II	CATG	3 cut(s)	131, 340, 383
HspAI	GCGC	3 cut(s)	329, 769, 805
KasI	GGCGCC	1 cut(s)	768
Kzo9I	GATC	2 cut(s)	339, 463
LmnI	GCTCC	4 cut(s)	496, 520, 527, 589
Lsp1109I	GCAGC	2 cut(s)	534, 579
MaeI	CTAG	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	290, 296
MalI	GATC	2 cut(s)	341, 465
MboI	GATC	2 cut(s)	339, 463
MboII	GAAGA	3 cut(s)	331, 445, 724
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	45, 493
MluCI	AATT	3 cut(s)	116, 441, 747
Mly113I	GGCGCC	1 cut(s)	769
MlyI	GAGTC	3 cut(s)	41, 152, 277
MmeI	TCCRAC	2 cut(s)	291, 649
MnlI	CCTC	6 cut(s)	48, 60, 223, 550, 634, 807
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	384
MspCI	CTTAAG	1 cut(s)	652
MspI	CCGG	4 cut(s)	147, 180, 480, 772
MspR9I	CCNGG	4 cut(s)	93, 168, 552, 694
MvaI	CCWGG	4 cut(s)	93, 168, 552, 694
MwoI	GCNNNNNNNGC	3 cut(s)	40, 507, 802
NarI	GGCGCC	1 cut(s)	769
NdeII	GATC	2 cut(s)	339, 463
NlaIII	CATG	3 cut(s)	131, 340, 383
NlaIV	GGNNCC	1 cut(s)	770
NmeAIII	GCCGAG	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	131
PciI	ACATGT	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	283, 549, 594
PleI	GAGTC	3 cut(s)	41, 151, 276
PluTI	GGCGCC	1 cut(s)	772
PpsI	GAGTC	3 cut(s)	41, 151, 276
PscI	ACATGT	1 cut(s)	127
Psp6I	CCWGG	4 cut(s)	91, 166, 550, 692
PspEI	GGTNACC	1 cut(s)	296
PspGI	CCWGG	4 cut(s)	91, 166, 550, 692
PspN4I	GGNNCC	1 cut(s)	770
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	3 cut(s)	282, 548, 593
Sau3AI	GATC	2 cut(s)	339, 463
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	3 cut(s)	41, 152, 277
ScrFI	CCNGG	4 cut(s)	93, 168, 552, 694
SduI	GDGCHC	2 cut(s)	45, 493
SetI	ASST	5 cut(s)	105, 172, 234, 525, 594
SfoI	GGCGCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	4 cut(s)	52, 104, 398, 652
SmoI	CTYRAG	4 cut(s)	52, 104, 398, 652
Sse9I	AATT	3 cut(s)	116, 441, 747
SsiI	CCGC	4 cut(s)	157, 281, 518, 676
SspDI	GGCGCC	1 cut(s)	768
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	4 cut(s)	91, 166, 550, 692
TaaI	ACNGT	3 cut(s)	290, 296, 498
TaqI	TCGA	2 cut(s)	9, 342
TasI	AATT	3 cut(s)	116, 441, 747
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	547, 592
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	453, 678
Vha464I	CTTAAG	1 cut(s)	652
VneI	GTGCAC	1 cut(s)	41
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.