Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000910

Physical Location & Seq

Genomic Coordinates Reverse (-)

4048277 .. 4048850

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04631.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTGTTTCACTGTTTCAACCCATTCGTTGAGGCCTACCGTGATAGTTACCCTGTAGGGTTGGATGAGAAGAAGTACGTGCCTGCCCATCGATTTTTCACACTCACCGGTTCGCATGCTCCACCGTGCCGCCTTCTGGAGCTTCCTACGGAGCTTTTAGCAAAGATTTTGAAGTGCCTACCAGTTGAGGATGTTGCTAGTGTGTCATGTGTTTGTAAGGAGCTGCGAAATCTGGCTAATGATGCATTTGATGAGCAGTTCTGGAAGCAAAAGCTTCGTGAGGAGTATGGCACAGGTTTTGTAAACGAAATTGATCAGGCGAGTTGGATTATATGTCTTGGAAGTCTAGGTTCCCTGACACTACGAATAATGAGAAGGAAAAATATTATAGGATCAGAGGTAGGTCGAGGCCGTGGCGCTGGAAACAACATCATCGGAAAAGAATATGGTAGGGAGTTTCCTCCTTTGCAATATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like HLH

Protein Analysis

160

Amino Acids

18.04

Weight (kDa)

7.59

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	45 - 81	1.1e-09	F-box domain
F-box-like	PF12937	46 - 89	3.4e-10	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23770 AT1G23780 AT1G70360 AT1G70360
fragaria_vesca	FvH4_2g03310 FvH4_4g04631 FvH4_5g20811
malus_domestica	MD05G1106300.v1.1 MD10G1110300.v1.1 MD10G1110400.v1.1 MD10G1110600.v1.1 MD10G1110700.v1.1 MD10G1175800.v1.1
prunus_persica	Prupe.8G150500_v2.0.a1
pyrus_communis	pycom05g10350 pycom10g09580 pycom10g09590 pycom16g16890
rosa_chinensis	RchiOBHm_Chr4g0395411 RchiOBHm_Chr4g0407371 RchiOBHm_Chr4g0407381 RchiOBHm_Chr4g0407391 RchiOBHm_Chr6g0248431
rosa_laevigata	RLG00000015154
rosa_multiflora	Rmu_sc0002553.1_g000006 Rmu_sc0003402.1_g000015 Rmu_sc0003402.1_g000017 Rmu_sc0003402.1_g000018 Rmu_sc0004598.1_g000002 Rmu_sc0010817.1_g000012 Rmu_sc0014661.1_g000003
rosa_roxburghii	Rroxscaffold_5G00351910 Rroxscaffold_5G00351990 Rroxscaffold_5G00352000 Rroxscaffold_6G00426810
rosa_rugosa	Rorug03G0357500 Rorug04G0078800 Rorug04G0078900 Rorug04G0079100 Rorug04G0081200 Rorug05G0531100
rosa_samantha	Rh4AG143800 Rh4AG143900 Rh4BG058200 Rh4BG141600 Rh4BG141900 Rh4BG142000 Rh4CG063700 Rh4CG150100 Rh4CG150200 Rh4CG150400 Rh4DG054800 Rh4DG137700 Rh4DG137900 Rh4DG138100 Rh6AG046800 Rh6BG043500 Rh6CG040200 Rh6DG036700
rosa_wichuraiana	Rw0G003310 Rw0G007650 Rw4G011690 Rw4G011710 Rw4G011720 Rw6G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	400
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	19, 172
AluBI	AGCT	4 cut(s)	142, 154, 223, 274
AluI	AGCT	4 cut(s)	142, 154, 223, 274
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	2 cut(s)	33, 409
ApeKI	GCWGC	1 cut(s)	223
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	396
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	2 cut(s)	198, 347
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	2 cut(s)	130, 224
BlsI	GCNGC	2 cut(s)	131, 225
BmiI	GGNNCC	1 cut(s)	352
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	2 cut(s)	70, 196
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	2 cut(s)	35, 411
BshTI	ACCGGT	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	2 cut(s)	35, 411
Bsp143I	GATC	2 cut(s)	313, 392
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	35, 411
BspDI	ATCGAT	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	313, 392
Bst4CI	ACNGT	3 cut(s)	14, 41, 126
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	84, 117
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	70, 196
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	316, 395
BstMBI	GATC	2 cut(s)	313, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	35, 411
BsuTUI	ATCGAT	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	70, 196
BtsIMutI	CAGTG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	84, 117
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	76
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	2 cut(s)	116, 207
CviJI	RGCY	7 cut(s)	35, 142, 154, 223, 236, 274, 411
CviKI_1	RGCY	7 cut(s)	35, 142, 154, 223, 236, 274, 411
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	2 cut(s)	315, 394
DpnII	GATC	2 cut(s)	313, 392
Eco147I	AGGCCT	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	247
FaeI	CATG	2 cut(s)	119, 210
FaiI	YATR	8 cut(s)	117, 208, 288, 332, 334, 389, 447, 478
FatI	CATG	2 cut(s)	115, 206
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	130, 224
FokI	GGATG	2 cut(s)	77, 203
Fsp4HI	GCNGC	2 cut(s)	130, 224
FspBI	CTAG	2 cut(s)	198, 347
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	2 cut(s)	130, 224
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	35, 411
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	119, 210
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	272
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	397, 437
Hpy188III	TCNNGA	3 cut(s)	137, 262, 278
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	143, 369
HpyCH4III	ACNGT	3 cut(s)	14, 41, 126
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	245, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	119, 210
HspAI	GCGC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	313, 392
LmnI	GCTCC	4 cut(s)	124, 139, 151, 220
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	198, 347
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	2 cut(s)	315, 394
MboI	GATC	2 cut(s)	313, 392
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	1 cut(s)	309
MmeI	TCCRAC	2 cut(s)	42, 305
MnlI	CCTC	6 cut(s)	25, 181, 274, 391, 401, 471
Mph1103I	ATGCAT	1 cut(s)	247
MspI	CCGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	2 cut(s)	313, 392
NlaIII	CATG	2 cut(s)	119, 210
NlaIV	GGNNCC	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	1 cut(s)	119
PaeI	GCATGC	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	35
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	131, 225
Ppu21I	YACGTR	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SatI	GCNGC	2 cut(s)	130, 224
Sau3AI	GATC	2 cut(s)	313, 392
SetI	ASST	9 cut(s)	81, 144, 156, 225, 276, 298, 352, 402, 406
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	54
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	1 cut(s)	130
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	2 cut(s)	198, 347
StuI	AGGCCT	1 cut(s)	35
TaaI	ACNGT	3 cut(s)	14, 41, 126
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	91, 406
TasI	AATT	1 cut(s)	309
TauI	GCSGC	1 cut(s)	132
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	1 cut(s)	223
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	17
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	2 cut(s)	198, 347
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.