AT1G23780

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000910
Physical Location & Seq
Reverse (-)
8406663 .. 8408530
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23780.1

Sequence Viewer

Length: 1428 bp
ATGAAGCTACGATTGAGACATCACGAGACGAGAGAAACCCTAAAACTTGAATTGGCCGATGCAGACACTCTCCATGATCTCCGGCGACGGATCAACCCCACGGTGCCTTCCTCCGTTCATCTCTCGCTCAATCGTAAAGACGAGCTCATCACGCCTTCGCCGGAGGATACGCTCCGATCTCTTGGTTTAATATCCGGTGACCTAATTTACTTCTCTCTCGAGGCTGGCGAATCTTCGAATTGGAAATTGAGAGATTCTGAAACCGTAGCTTCTCAATCGGAGAGTAATCAGACGAGTGTTCATGATTCGATTGGGTTCGCAGAGGTTGATGTTGTCCCCGATCAAGCGAAATCTAATCCTAATACCTCCGTAGAAGATCCAGAGGGAGATATTTCGGGTATGGAGGGTCCAGAGCCGATGGATGTTGAGCAGCTTGACATGGAGCTCGCTGCAGCTGGAAGCAAAAGGCTAAGTGAACCATTCTTCTTGAAAAATATACTGCTTGAGAAATCTGGTGATACTAGTGAGTTGACTACTTTGGCTTTGTCAGTACATGCTGTTATGTTAGAATCTGGATTCGTGCTGTTGAATCATGGCTCTGACAAGTTTAACTTTTCAAAGGAGTTACTTACAGTATCCCTGAGGTATACTCTACCTGAGCTGATTAAGTCTAAGGATACAAATACAATCGAGTCAGTTTCTGTGAAGTTTCAGAATTTAGGCCCTGTGGTTGTAGTTTACGGAACTGTAGGTGGATCTAGTGGGCGAGTGCATATGAATCTTGATAAGCGTAGGTTTGTTCCTGTTATCGACTTGGTTATGGATACTTCTACATCTGACGAAGAAGGCTCTTCGAGTATCTACCGTGAAGTGTTCATGTTCTGGAGAATGGTAAAAGATCGCCTTGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTGGCTTGGAACCTCCACCGTGTTTGATGCGCTTACCAACAGAGCTAAAGCTGAAGATACTAGAGTTGCTTCCTGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGAAATGCGGTATCTGGCATCAGACAATGACTTGTGGAAGCAGAAGTGCTTGGAGGAAGTTAATAATTTTGTTGTGACAGAAGCGGGTGATTCAGTTAATTGGAAGGCGAGGTTTGCTACTTTTTGGAGGCAAAAACAGCTTGCTGCTGCTAGTGATACTTTTTGGAGGCAAAACCAGCTTGGAAGGCGGAACATTTCCACGGGAAGAAGCGGCATACGATTCCCTCGAATCATTGGAGACCCTCCTTTCACATGGTTTAATGGGGATCGCATGCATGGATCCATTGGTATTCACCCGGGACAATCAGCACGTGGGCTCGGCAGACGAACATGGGGACAGCTCTTTACTCCCAGATGCAATCTTGGGGGACTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH UN_NPL4

Protein Analysis

475

Amino Acids

52.95

Weight (kDa)

5.79

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 323 - 363 7.5e-07 F-box domain
F-box-like PF12937 324 - 367 3.3e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 647
AciI CCGC 4 cut(s) 1057, 1133, 1237, 1260
AclWI GGATC 6 cut(s) 98, 371, 763, 1323, 1323, 1336
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 715
AcuI CTGAAG 1 cut(s) 1013
AcvI CACGTG 1 cut(s) 1361
AfaI GTAC 2 cut(s) 552, 1048
AgsI TTSAA 4 cut(s) 50, 490, 589, 618
AhlI ACTAGT 1 cut(s) 521
AjnI CCWGG 1 cut(s) 1012
Alw21I GWGCWC 2 cut(s) 147, 447
Alw26I GTCTC 3 cut(s) 10, 20, 1281
AlwI GGATC 6 cut(s) 98, 371, 763, 1323, 1323, 1336
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 2 cut(s) 218, 1345
AoxI GGCC 2 cut(s) 54, 721
ApeKI GCWGC 5 cut(s) 430, 449, 452, 1193, 1196
ApoI RAATTY 1 cut(s) 715
AspLEI GCGC 1 cut(s) 972
AspS9I GGNCC 2 cut(s) 407, 722
AsuC2I CCSGG 2 cut(s) 1346, 1347
AsuHPI GGTGA 4 cut(s) 209, 527, 1148, 1334
AsuII TTCGAA 1 cut(s) 236
AvaI CYCGRG 2 cut(s) 218, 1345
AvaII GGWCC 1 cut(s) 407
AxyI CCTNAGG 1 cut(s) 641
BaeI ACNNNNGTAYC 2 cut(s) 989, 1022
BamHI GGATCC 1 cut(s) 1328
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 3 cut(s) 147, 447, 1368
BauI CACGAG 1 cut(s) 23
BbrPI CACGTG 1 cut(s) 1361
Bbv12I GWGCWC 2 cut(s) 147, 447
BbvI GCAGC 5 cut(s) 436, 442, 464, 1180, 1183
BccI CCATC 1 cut(s) 412
BciT130I CCWGG 1 cut(s) 1014
BciVI GTATCC 4 cut(s) 160, 646, 670, 817
BcnI CCSGG 2 cut(s) 1346, 1347
BcoDI GTCTC 3 cut(s) 10, 20, 1281
BcuI ACTAGT 1 cut(s) 521
BfaI CTAG 5 cut(s) 522, 759, 1001, 1200, 1426
BfmI CTRYAG 2 cut(s) 450, 747
BfuI GTATCC 4 cut(s) 160, 646, 670, 817
BisI GCNGC 6 cut(s) 431, 450, 453, 1194, 1197, 1261
BlsI GCNGC 6 cut(s) 432, 451, 454, 1195, 1198, 1262
Bme1390I CCNGG 3 cut(s) 1014, 1346, 1347
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 2 cut(s) 218, 1345
BmgT120I GGNCC 2 cut(s) 407, 722
BmiI GGNNCC 4 cut(s) 105, 408, 951, 1330
BmrFI CCNGG 3 cut(s) 1014, 1346, 1347
BmsI GCATC 4 cut(s) 49, 957, 1076, 1394
BplI GAGNNNNNCTC 2 cut(s) 634, 666
BpmI CTGGAG 1 cut(s) 904
Bpu10I CCTNAGC 1 cut(s) 657
Bpu14I TTCGAA 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 2 cut(s) 1346, 1347
BsaAI YACGTR 1 cut(s) 1361
BsaI GGTCTC 1 cut(s) 1281
BsaJI CCNNGG 3 cut(s) 99, 1248, 1345
BsaWI WCCGGW 1 cut(s) 194
Bse21I CCTNAGG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 1014
BseDI CCNNGG 3 cut(s) 99, 1248, 1345
BseGI GGATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 632, 648
BseXI GCAGC 5 cut(s) 436, 442, 464, 1180, 1183
BshFI GGCC 2 cut(s) 56, 723
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 147, 447
BsiHKCI CYCGRG 2 cut(s) 218, 1345
BsiSI CCGG 4 cut(s) 82, 161, 195, 1346
BslFI GGGAC 3 cut(s) 320, 1362, 1398
BsmAI GTCTC 3 cut(s) 10, 20, 1281
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 3 cut(s) 320, 1362, 1398
BsnI GGCC 2 cut(s) 56, 723
Bso31I GGTCTC 1 cut(s) 1281
BsoBI CYCGRG 2 cut(s) 218, 1345
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 147, 447, 1368
Bsp1407I TGTACA 1 cut(s) 1046
Bsp143I GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
BspACI CCGC 4 cut(s) 1057, 1133, 1237, 1260
BspANI GGCC 2 cut(s) 56, 723
BspCNI CTCAG 2 cut(s) 633, 649
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 4 cut(s) 105, 408, 951, 1330
BspMAI CTGCAG 1 cut(s) 454
BspPI GGATC 6 cut(s) 98, 371, 763, 1323, 1323, 1336
BspQI GCTCTTC 1 cut(s) 856
BspT104I TTCGAA 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 1281
BsrGI TGTACA 1 cut(s) 1046
BssECI CCNNGG 3 cut(s) 99, 1248, 1345
BssMI GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
BssNAI GTATAC 1 cut(s) 648
BssSI CACGAG 1 cut(s) 23
Bst1107I GTATAC 1 cut(s) 648
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 1014
Bst4CI ACNGT 6 cut(s) 103, 265, 634, 748, 866, 960
Bst6I CTCTTC 1 cut(s) 856
BstAUI TGTACA 1 cut(s) 1046
BstBAI YACGTR 1 cut(s) 1361
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 5 cut(s) 226, 447, 943, 1191, 1322
BstDEI CTNAG 4 cut(s) 470, 641, 657, 672
BstDSI CCRYGG 2 cut(s) 99, 1248
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 427
BstHHI GCGC 1 cut(s) 972
BstKTI GATC 9 cut(s) 79, 93, 179, 343, 379, 758, 901, 1318, 1331
BstMAI GTCTC 3 cut(s) 10, 20, 1281
BstMBI GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
BstMWI GCNNNNNNNGC 5 cut(s) 151, 1163, 1186, 1225, 1234
BstNI CCWGG 1 cut(s) 1014
BstNSI RCATGY 2 cut(s) 557, 1324
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 3 cut(s) 1012, 1344, 1345
BstSFI CTRYAG 2 cut(s) 450, 747
BstV1I GCAGC 5 cut(s) 436, 442, 464, 1180, 1183
BstX2I RGATCY 3 cut(s) 376, 755, 1328
BstYI RGATCY 3 cut(s) 376, 755, 1328
BstZ17I GTATAC 1 cut(s) 648
Bsu36I CCTNAGG 1 cut(s) 641
BsuI GTATCC 4 cut(s) 160, 646, 670, 817
BsuRI GGCC 2 cut(s) 56, 723
BtgI CCRYGG 2 cut(s) 99, 1248
BtsCI GGATG 1 cut(s) 427
Cac8I GCNNGC 5 cut(s) 226, 447, 943, 1191, 1322
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 972
Cfr13I GGNCC 2 cut(s) 407, 722
Cfr9I CCCGGG 1 cut(s) 1345
Csp6I GTAC 2 cut(s) 551, 1047
CspCI CAANNNNNGTGG 2 cut(s) 945, 980
CviQI GTAC 2 cut(s) 551, 1047
DdeI CTNAG 4 cut(s) 470, 641, 657, 672
DpnI GATC 9 cut(s) 78, 92, 178, 342, 378, 757, 900, 1317, 1330
DpnII GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 856
EarI CTCTTC 1 cut(s) 856
EciI GGCGGA 1 cut(s) 1252
Ecl136II GAGCTC 2 cut(s) 145, 445
Eco24I GRGCYC 3 cut(s) 147, 447, 1368
Eco31I GGTCTC 1 cut(s) 1281
Eco47I GGWCC 1 cut(s) 407
Eco53kI GAGCTC 2 cut(s) 145, 445
Eco57I CTGAAG 1 cut(s) 1013
Eco72I CACGTG 1 cut(s) 1361
Eco81I CCTNAGG 1 cut(s) 641
Eco88I CYCGRG 2 cut(s) 218, 1345
Eco91I GGTNACC 1 cut(s) 197
EcoICRI GAGCTC 2 cut(s) 145, 445
EcoO109I RGGNCCY 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 1012
EcoT22I ATGCAT 1 cut(s) 1326
EcoT38I GRGCYC 3 cut(s) 147, 447, 1368
Esp3I CGTCTC 1 cut(s) 20
FalI AAGNNNNNCTT 4 cut(s) 596, 628, 888, 920
FaqI GGGAC 3 cut(s) 320, 1362, 1398
FauI CCCGC 1 cut(s) 1126
FauNDI CATATG 1 cut(s) 774
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 6 cut(s) 431, 450, 453, 1194, 1197, 1261
FokI GGATG 1 cut(s) 434
FriOI GRGCYC 3 cut(s) 147, 447, 1368
Fsp4HI GCNGC 6 cut(s) 431, 450, 453, 1194, 1197, 1261
FspBI CTAG 5 cut(s) 522, 759, 1001, 1200, 1426
GlaI GCGC 1 cut(s) 971
GluI GCNGC 6 cut(s) 431, 450, 453, 1194, 1197, 1261
GsuI CTGGAG 1 cut(s) 904
HaeIII GGCC 2 cut(s) 56, 723
HapII CCGG 4 cut(s) 82, 161, 195, 1346
HhaI GCGC 1 cut(s) 972
Hin6I GCGC 1 cut(s) 970
HinP1I GCGC 1 cut(s) 970
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HpaII CCGG 4 cut(s) 82, 161, 195, 1346
HphI GGTGA 4 cut(s) 209, 527, 1148, 1334
Hpy166II GTNNAC 4 cut(s) 476, 531, 648, 739
Hpy188I TCNGA 8 cut(s) 176, 259, 280, 291, 601, 714, 838, 1072
Hpy188III TCNNGA 9 cut(s) 23, 218, 302, 380, 410, 487, 573, 782, 883
Hpy8I GTNNAC 4 cut(s) 476, 531, 648, 739
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 5 cut(s) 117, 165, 839, 1147, 1227
HpyCH4III ACNGT 6 cut(s) 103, 265, 634, 748, 866, 960
HpyCH4IV ACGT 1 cut(s) 1360
HpyCH4V TGCA 5 cut(s) 62, 452, 772, 1324, 1407
HpyF10VI GCNNNNNNNGC 5 cut(s) 151, 1163, 1186, 1225, 1234
HpyF3I CTNAG 4 cut(s) 470, 641, 657, 672
HpySE526I ACGT 1 cut(s) 1360
HspAI GCGC 1 cut(s) 970
Kzo9I GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
LguI GCTCTTC 1 cut(s) 856
LmnI GCTCC 2 cut(s) 177, 442
Lsp1109I GCAGC 5 cut(s) 436, 442, 464, 1180, 1183
LweI GCATC 4 cut(s) 49, 957, 1076, 1394
MaeI CTAG 5 cut(s) 522, 759, 1001, 1200, 1426
MaeII ACGT 1 cut(s) 1360
MaeIII GTNAC 3 cut(s) 197, 624, 1123
MalI GATC 9 cut(s) 78, 92, 178, 342, 378, 757, 900, 1317, 1330
MboI GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
MboII GAAGA 7 cut(s) 225, 386, 475, 843, 854, 1006, 1266
MflI RGATCY 3 cut(s) 376, 755, 1328
MhlI GDGCHC 3 cut(s) 147, 447, 1368
MluCI AATT 7 cut(s) 50, 204, 238, 245, 715, 1114, 1147
MlyI GAGTC 2 cut(s) 701, 1413
Mph1103I ATGCAT 1 cut(s) 1326
MseI TTAA 6 cut(s) 188, 609, 666, 1110, 1146, 1308
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 4 cut(s) 82, 161, 195, 1346
MspR9I CCNGG 3 cut(s) 1014, 1346, 1347
MvaI CCWGG 1 cut(s) 1014
MwoI GCNNNNNNNGC 5 cut(s) 151, 1163, 1186, 1225, 1234
NciI CCSGG 2 cut(s) 1346, 1347
NdeI CATATG 1 cut(s) 774
NdeII GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
NlaIV GGNNCC 4 cut(s) 105, 408, 951, 1330
NmeAIII GCCGAG 1 cut(s) 1347
NmuCI GTSAC 2 cut(s) 197, 1123
NsiI ATGCAT 1 cut(s) 1326
NspI RCATGY 2 cut(s) 557, 1324
NspV TTCGAA 1 cut(s) 236
PaeI GCATGC 1 cut(s) 1324
PaeR7I CTCGAG 1 cut(s) 218
PagI TCATGA 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 856
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 1273
PkrI GCNGC 6 cut(s) 432, 451, 454, 1195, 1198, 1262
PleI GAGTC 2 cut(s) 700, 1413
PmaCI CACGTG 1 cut(s) 1361
PmlI CACGTG 1 cut(s) 1361
PpsI GAGTC 2 cut(s) 700, 1413
Ppu21I YACGTR 1 cut(s) 1361
Psp124BI GAGCTC 2 cut(s) 147, 447
Psp6I CCWGG 1 cut(s) 1012
PspCI CACGTG 1 cut(s) 1361
PspEI GGTNACC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 1012
PspN4I GGNNCC 4 cut(s) 105, 408, 951, 1330
PspPI GGNCC 2 cut(s) 407, 722
PstI CTGCAG 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 3 cut(s) 376, 755, 1328
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 552, 1048
RsaNI GTAC 2 cut(s) 551, 1047
SacI GAGCTC 2 cut(s) 147, 447
SapI GCTCTTC 1 cut(s) 856
SaqAI TTAA 6 cut(s) 188, 609, 666, 1110, 1146, 1308
SatI GCNGC 6 cut(s) 431, 450, 453, 1194, 1197, 1261
Sau3AI GATC 9 cut(s) 76, 90, 176, 340, 376, 755, 898, 1315, 1328
Sau96I GGNCC 2 cut(s) 407, 722
SchI GAGTC 2 cut(s) 701, 1413
ScrFI CCNGG 3 cut(s) 1014, 1346, 1347
SduI GDGCHC 3 cut(s) 147, 447, 1368
SfaNI GCATC 4 cut(s) 49, 957, 1076, 1394
SfcI CTRYAG 2 cut(s) 450, 747
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 236
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 218
SmaI CCCGGG 1 cut(s) 1347
SmlI CTYRAG 2 cut(s) 218, 503
SmoI CTYRAG 2 cut(s) 218, 503
SpeI ACTAGT 1 cut(s) 521
SphI GCATGC 1 cut(s) 1324
Sse9I AATT 7 cut(s) 50, 204, 238, 245, 715, 1114, 1147
SsiI CCGC 4 cut(s) 1057, 1133, 1237, 1260
SspMI CTAG 5 cut(s) 522, 759, 1001, 1200, 1426
SstI GAGCTC 2 cut(s) 147, 447
StyD4I CCNGG 3 cut(s) 1012, 1344, 1345
TaaI ACNGT 6 cut(s) 103, 265, 634, 748, 866, 960
TaiI ACGT 1 cut(s) 1363
TaqI TCGA 7 cut(s) 219, 236, 308, 690, 810, 854, 1276
TasI AATT 7 cut(s) 50, 204, 238, 245, 715, 1114, 1147
TatI WGTACW 2 cut(s) 550, 1046
TauI GCSGC 1 cut(s) 1263
Tru1I TTAA 6 cut(s) 188, 609, 666, 1110, 1146, 1308
Tru9I TTAA 6 cut(s) 188, 609, 666, 1110, 1146, 1308
TseFI GTSAC 2 cut(s) 197, 1123
TseI GCWGC 5 cut(s) 430, 449, 452, 1193, 1196
Tsp45I GTSAC 2 cut(s) 197, 1123
TspDTI ATGAA 5 cut(s) 17, 107, 290, 791, 865
TspGWI ACGGA 4 cut(s) 103, 103, 358, 756
TspMI CCCGGG 1 cut(s) 1345
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 715
XceI RCATGY 2 cut(s) 557, 1324
XhoI CTCGAG 1 cut(s) 218
XmaI CCCGGG 1 cut(s) 1345
XmiI GTMKAC 1 cut(s) 647
XspI CTAG 5 cut(s) 522, 759, 1001, 1200, 1426
Zsp2I ATGCAT 1 cut(s) 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.