Rh6AG046800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000910
Physical Location & Seq
Reverse (-)
6820906 .. 6822108
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG046800.1

Sequence Viewer

Length: 1203 bp
ATGGCCGAAGATCCGAGGTCGGCTTCGGAAACCCTAATTGGCGAAGGGTGTTCTGGTGTGGGAGCTTCGATCGCCGAAGAGCCGAGGTCTGTGGTTTCGAATTCTGAAACCCTAATGGAGTCGGAAACCCTAATTGGCGAAGGGTCTTGTGGTATGGAAATTGATGATGAAGATGAGTCGACTGGAGTGGTGAGGAAGAAGTACTCTGTTCCGTTTTTCTTGAGGAGGGTGATGAGGGAGGAGTTAGCCGAAGATCGTAGCGATCACAAGCTACTGGTGATTGCATTACATGCGGTGCTCGCAGAGTCTCGATTCGTCAGGTTTGATTCTGTTTCGGGTGTGCAGACCGATCGGTTTCATCTTCCGAAAGAATGGCCGGCAGTGGCTTACACGCTGTCCCTCTTGTATACATTGCCTGAGGTTCTGCAGAATCGGGGCAATGGCGGTGGTGGGGTTGAAGCTGTGGTGCTGAAGATTCAGACTTTGGGGCATTTTGTCAATGTCTATGGGTCATTGGCCCGTGGCGGCGGTTCCGGGCATTATAGGGTGTCTTTGGATGTGAAGAGGTTTGCCCCAATGCTGGATTTTGTCTGGGGAAGCAGGAATGTGAGTGATAGTGAAGTGTTTGTCCCGGAAATTGAAATCTTTGAGTTTTGGAGGATTGTCAAGGATGGAATTACATACCCATTGCTGATTGATCTTTGTGCAAAGGCTGGTTTGCCCGAGCCGCCCAGCTTCATGTGCCTTCCTTTGGATCTCAAGATGAATATTTTGGAGAGGCTGTCTGGTGTTGACATTGCGAAAGTGGGATGTGCTTGTAAGGAGCTACAAAATCTAGCCAATAATGATGAGCTCTGGAAGCAGAAGTTTCAGGAGGAGTTCAGGGAGGACGCAGGAGGAATAGGTAACTGGAAGTTTCAATATGCTGGGAAGTGGGAGGATAGGGAGCGAGAGAAGAAGGCACTGGTCACGTGGAGACCAAGGCTTCATCACAATTTCCCTATTAGAAGGAACCCAGAAATCCCATTTGTACCTGGTTTTCCTGGAATTATTAGGGATCCTCCAGATTTTGGTGTCCCTGACCCTTTTAGACGACCACGGTTACCATACCCTCTTGGTGGTGGTCAGCCTGCAATCTTTTGGCATGGGAGGAGGCAGAATTTCTCTCCCAATTGCAATCTGGGAGGAGGATTTAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

400

Amino Acids

44.79

Weight (kDa)

5.56

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 247 - 287 3.9e-06 F-box domain
F-box-like PF12937 248 - 291 2.2e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccI GTMKAC 2 cut(s) 179, 407
AciI CCGC 5 cut(s) 293, 444, 525, 528, 728
AclWI GGATC 4 cut(s) 5, 762, 1052, 1065
AcoI YGGCCR 2 cut(s) 3, 374
AcsI RAATTY 2 cut(s) 100, 1159
AcuI CTGAAG 1 cut(s) 491
AcvI CACGTG 1 cut(s) 972
AfaI GTAC 2 cut(s) 203, 1032
AfiI CCNNNNNNNGG 4 cut(s) 580, 751, 1070, 1118
AgsI TTSAA 3 cut(s) 458, 641, 920
AjnI CCWGG 2 cut(s) 1033, 1042
AjuI GAANNNNNNNTTGG 4 cut(s) 21, 53, 117, 149
AluBI AGCT 6 cut(s) 65, 271, 461, 735, 826, 853
AluI AGCT 6 cut(s) 65, 271, 461, 735, 826, 853
Alw21I GWGCWC 2 cut(s) 300, 855
Alw26I GTCTC 2 cut(s) 312, 970
AlwI GGATC 4 cut(s) 5, 762, 1052, 1065
Ama87I CYCGRG 1 cut(s) 722
AoxI GGCC 3 cut(s) 3, 374, 516
ApoI RAATTY 2 cut(s) 100, 1159
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 2 cut(s) 535, 632
AsuHPI GGTGA 3 cut(s) 202, 241, 289
AsuII TTCGAA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 722
AxyI CCTNAGG 1 cut(s) 417
BamHI GGATCC 1 cut(s) 1057
BanII GRGCYC 1 cut(s) 855
BbrPI CACGTG 1 cut(s) 972
Bbv12I GWGCWC 2 cut(s) 300, 855
BccI CCATC 1 cut(s) 665
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 2 cut(s) 1035, 1044
BcnI CCSGG 2 cut(s) 535, 632
BcoDI GTCTC 2 cut(s) 312, 970
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 1 cut(s) 425
BisI GCNGC 2 cut(s) 526, 728
BlsI GCNGC 2 cut(s) 527, 729
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 4 cut(s) 535, 632, 1035, 1044
BmeT110I CYCGRG 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 3 cut(s) 532, 1013, 1059
BmrFI CCNGG 4 cut(s) 535, 632, 1035, 1044
BpmI CTGGAG 2 cut(s) 204, 1047
Bpu14I TTCGAA 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 241, 743
BpuMI CCSGG 2 cut(s) 535, 632
BsaAI YACGTR 1 cut(s) 972
BsaI GGTCTC 1 cut(s) 970
BsaJI CCNNGG 5 cut(s) 14, 83, 520, 980, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 767, 797
Bsc4I CCNNNNNNNGG 4 cut(s) 580, 751, 1070, 1118
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 4 cut(s) 187, 279, 914, 969
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 4 cut(s) 410, 445, 686, 795
BseBI CCWGG 2 cut(s) 1035, 1044
BseDI CCNNGG 5 cut(s) 14, 83, 520, 980, 1097
BseGI GGATG 3 cut(s) 562, 676, 815
BseLI CCNNNNNNNGG 4 cut(s) 580, 751, 1070, 1118
BseMI GCAATG 4 cut(s) 410, 445, 686, 795
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 4 cut(s) 187, 279, 914, 969
BseRI GAGGAG 5 cut(s) 238, 254, 890, 1165, 1200
BseYI CCCAGC 2 cut(s) 731, 926
BsgI GTGCAG 1 cut(s) 362
Bsh1285I CGRYCG 2 cut(s) 72, 352
BshFI GGCC 3 cut(s) 5, 376, 518
BsiEI CGRYCG 2 cut(s) 72, 352
BsiHKAI GWGCWC 2 cut(s) 300, 855
BsiHKCI CYCGRG 1 cut(s) 722
BsiSI CCGG 3 cut(s) 377, 534, 632
BslFI GGGAC 3 cut(s) 382, 614, 1061
BslI CCNNNNNNNGG 4 cut(s) 580, 751, 1070, 1118
BsmAI GTCTC 2 cut(s) 312, 970
BsmFI GGGAC 3 cut(s) 382, 614, 1061
BsnI GGCC 3 cut(s) 5, 376, 518
Bso31I GGTCTC 1 cut(s) 970
BsoBI CYCGRG 1 cut(s) 722
Bsp119I TTCGAA 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 300, 855
Bsp143I GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
BspACI CCGC 5 cut(s) 293, 444, 525, 528, 728
BspANI GGCC 3 cut(s) 5, 376, 518
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 532, 1013, 1059
BspMAI CTGCAG 1 cut(s) 429
BspPI GGATC 4 cut(s) 5, 762, 1052, 1065
BspQI GCTCTTC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 970
BsrDI GCAATG 4 cut(s) 410, 445, 686, 795
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 4 cut(s) 187, 279, 914, 969
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 5 cut(s) 14, 83, 520, 980, 1097
BssMI GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
BssNAI GTATAC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 980
Bst1107I GTATAC 1 cut(s) 408
Bst2UI CCWGG 2 cut(s) 1035, 1044
Bst4CI ACNGT 1 cut(s) 1101
Bst6I CTCTTC 2 cut(s) 72, 557
BstAPI GCANNNNNTGC 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 972
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 300, 378, 1131
BstDEI CTNAG 1 cut(s) 417
BstDSI CCRYGG 2 cut(s) 520, 1097
BstEII GGTNACC 1 cut(s) 1101
BstF5I GGATG 3 cut(s) 562, 676, 815
BstKTI GATC 8 cut(s) 13, 72, 256, 265, 352, 700, 757, 1060
BstMAI GTCTC 2 cut(s) 312, 970
BstMBI GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
BstMCI CGRYCG 2 cut(s) 72, 352
BstMWI GCNNNNNNNGC 6 cut(s) 71, 290, 299, 727, 741, 859
BstNI CCWGG 2 cut(s) 1035, 1044
BstNSI RCATGY 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 1101
BstSCI CCNGG 4 cut(s) 533, 630, 1033, 1042
BstSFI CTRYAG 1 cut(s) 425
BstX2I RGATCY 3 cut(s) 10, 754, 1057
BstYI RGATCY 3 cut(s) 10, 754, 1057
BstZ17I GTATAC 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 3 cut(s) 5, 376, 518
BtgI CCRYGG 2 cut(s) 520, 1097
BtsCI GGATG 3 cut(s) 562, 676, 815
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 387, 962
Cac8I GCNNGC 3 cut(s) 300, 378, 1131
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 517
CseI GACGC 1 cut(s) 899
CsiI ACCWGGT 1 cut(s) 1033
Csp6I GTAC 2 cut(s) 202, 1031
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 3 cut(s) 290, 739, 1145
CviQI GTAC 2 cut(s) 202, 1031
DdeI CTNAG 1 cut(s) 417
DpnI GATC 8 cut(s) 12, 71, 255, 264, 351, 699, 756, 1059
DpnII GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
EaeI YGGCCR 2 cut(s) 3, 374
Eam1104I CTCTTC 2 cut(s) 72, 557
EarI CTCTTC 2 cut(s) 72, 557
Ecl136II GAGCTC 1 cut(s) 853
Eco130I CCWWGG 1 cut(s) 980
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 1 cut(s) 491
Eco72I CACGTG 1 cut(s) 972
Eco81I CCTNAGG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 722
Eco91I GGTNACC 1 cut(s) 1101
EcoICRI GAGCTC 1 cut(s) 853
EcoO65I GGTNACC 1 cut(s) 1101
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 1033, 1042
EcoT14I CCWWGG 1 cut(s) 980
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 980
FaeI CATG 3 cut(s) 293, 742, 1148
FaqI GGGAC 3 cut(s) 382, 614, 1061
FatI CATG 3 cut(s) 289, 738, 1144
FblI GTMKAC 2 cut(s) 179, 407
Fnu4HI GCNGC 2 cut(s) 526, 728
FokI GGATG 3 cut(s) 569, 683, 822
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 2 cut(s) 526, 728
FspBI CTAG 1 cut(s) 836
GluI GCNGC 2 cut(s) 526, 728
GsaI CCCAGC 2 cut(s) 735, 930
GsuI CTGGAG 2 cut(s) 204, 1047
HaeIII GGCC 3 cut(s) 5, 376, 518
HapII CCGG 3 cut(s) 377, 534, 632
HgaI GACGC 1 cut(s) 899
Hin1II CATG 3 cut(s) 293, 742, 1148
HincII GTYRAC 2 cut(s) 180, 793
HindII GTYRAC 2 cut(s) 180, 793
HinfI GANTC 7 cut(s) 119, 176, 305, 312, 326, 430, 475
HpaII CCGG 3 cut(s) 377, 534, 632
HphI GGTGA 3 cut(s) 202, 241, 289
Hpy166II GTNNAC 3 cut(s) 180, 408, 793
Hpy188I TCNGA 6 cut(s) 15, 28, 106, 124, 366, 480
Hpy188III TCNNGA 6 cut(s) 220, 309, 760, 856, 872, 1064
Hpy8I GTNNAC 3 cut(s) 180, 408, 793
HpyAV CCTTC 5 cut(s) 38, 134, 755, 952, 1002
HpyCH4III ACNGT 1 cut(s) 1101
HpyCH4IV ACGT 1 cut(s) 971
HpyCH4V TGCA 6 cut(s) 284, 343, 427, 707, 1133, 1176
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 290, 299, 727, 741, 859
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 971
Hsp92II CATG 3 cut(s) 293, 742, 1148
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 3 cut(s) 62, 823, 946
MabI ACCWGGT 1 cut(s) 1033
MaeI CTAG 1 cut(s) 836
MaeII ACGT 1 cut(s) 971
MaeIII GTNAC 3 cut(s) 905, 967, 1101
MalI GATC 8 cut(s) 12, 71, 255, 264, 351, 699, 756, 1059
MboI GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
MboII GAAGA 9 cut(s) 20, 89, 182, 208, 263, 353, 484, 574, 967
MfeI CAATTG 1 cut(s) 1171
MflI RGATCY 3 cut(s) 10, 754, 1057
MhlI GDGCHC 2 cut(s) 300, 855
MlyI GAGTC 3 cut(s) 128, 185, 314
MmeI TCCRAC 1 cut(s) 102
MroNI GCCGGC 1 cut(s) 376
MspI CCGG 3 cut(s) 377, 534, 632
MspR9I CCNGG 4 cut(s) 535, 632, 1035, 1044
MunI CAATTG 1 cut(s) 1171
MvaI CCWGG 2 cut(s) 1035, 1044
MwoI GCNNNNNNNGC 6 cut(s) 71, 290, 299, 727, 741, 859
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 2 cut(s) 535, 632
NdeII GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 3 cut(s) 293, 742, 1148
NlaIV GGNNCC 3 cut(s) 532, 1013, 1059
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 967
NspI RCATGY 1 cut(s) 293
NspV TTCGAA 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 312, 326, 430, 475
PflMI CCANNNNNTGG 1 cut(s) 1070
PfoI TCCNGGA 2 cut(s) 630, 1042
PkrI GCNGC 2 cut(s) 527, 729
Ple19I CGATCG 2 cut(s) 72, 352
PleI GAGTC 3 cut(s) 127, 184, 313
PmaCI CACGTG 1 cut(s) 972
PmlI CACGTG 1 cut(s) 972
PpsI GAGTC 3 cut(s) 127, 184, 313
Ppu21I YACGTR 1 cut(s) 972
Psp124BI GAGCTC 1 cut(s) 855
Psp6I CCWGG 2 cut(s) 1033, 1042
PspCI CACGTG 1 cut(s) 972
PspEI GGTNACC 1 cut(s) 1101
PspFI CCCAGC 2 cut(s) 731, 926
PspGI CCWGG 2 cut(s) 1033, 1042
PspN4I GGNNCC 3 cut(s) 532, 1013, 1059
PspPI GGNCC 1 cut(s) 517
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 3 cut(s) 10, 754, 1057
PvuI CGATCG 2 cut(s) 72, 352
RsaI GTAC 2 cut(s) 203, 1032
RsaNI GTAC 2 cut(s) 202, 1031
SacI GAGCTC 1 cut(s) 855
SalI GTCGAC 1 cut(s) 178
SapI GCTCTTC 1 cut(s) 72
SatI GCNGC 2 cut(s) 526, 728
Sau3AI GATC 8 cut(s) 10, 69, 253, 262, 349, 697, 754, 1057
Sau96I GGNCC 1 cut(s) 517
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 3 cut(s) 128, 185, 314
ScrFI CCNGG 4 cut(s) 535, 632, 1035, 1044
SduI GDGCHC 2 cut(s) 300, 855
SexAI ACCWGGT 1 cut(s) 1033
SfcI CTRYAG 1 cut(s) 425
SfuI TTCGAA 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 220, 758
SmoI CTYRAG 2 cut(s) 220, 758
SsiI CCGC 5 cut(s) 293, 444, 525, 528, 728
SspI AATATT 1 cut(s) 769
SspMI CTAG 1 cut(s) 836
SstI GAGCTC 1 cut(s) 855
StyD4I CCNGG 4 cut(s) 533, 630, 1033, 1042
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 1 cut(s) 1101
TaiI ACGT 1 cut(s) 974
TaqI TCGA 4 cut(s) 68, 98, 179, 310
TaqII GACCGA 1 cut(s) 362
TatI WGTACW 1 cut(s) 201
TauI GCSGC 2 cut(s) 528, 730
TfiI GAWTC 4 cut(s) 312, 326, 430, 475
TscAI CASTG 2 cut(s) 387, 969
TseFI GTSAC 1 cut(s) 967
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 5 cut(s) 183, 347, 727, 779, 977
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 2 cut(s) 387, 969
Van91I CCANNNNNTGG 1 cut(s) 1070
XapI RAATTY 2 cut(s) 100, 1159
XceI RCATGY 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 1177
XmiI GTMKAC 2 cut(s) 179, 407
XspI CTAG 1 cut(s) 836
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.