pycom16g16890

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
12907669 .. 12908100
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g16890.1

Sequence Viewer

Length: 432 bp
ATGTTGGCCAATCAAAGGACGGGTTCAACGATTTCGCTTTCGTATACTCTGCTTGAGATATTGCGAAATCGGGGCAATACTAGTAGAGAGGTTGAAAGGGTTGTGTTGAAGTTTCAGAATTTGGTGCATTTTGTGAATGTTTATGGGTCTTTGGCAAATGACAATTCTTCGCCCTATCAGGTATGTTTGGACAAAAACAGATTTGCCCCAATGATTGAATTCGTTTATGAAACCCAAAATGTCAATGACAGAGATGGGTTCGTTTTAGAGTTATGGAAGATTGTGAAAGATGCGATCACATTCCCATTACTGATTAATCTTTGCGCAAAGACTGGTTTTACCTGCACCACCGAGCTTTATGCGCCTTCCACCGGAGCTCAAAATGAAGATTCTGGAGCCAATTCTTACCGTTGTCAGACAAGAAGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.27

Weight (kDa)

8.39

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 350
AccI GTMKAC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 118, 218
AfiI CCNNNNNNNGG 2 cut(s) 15, 371
AgsI TTSAA 4 cut(s) 27, 95, 109, 218
AhlI ACTAGT 1 cut(s) 80
AluBI AGCT 2 cut(s) 355, 377
AluI AGCT 2 cut(s) 355, 377
Alw21I GWGCWC 1 cut(s) 379
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 2 cut(s) 118, 218
AseI ATTAAT 1 cut(s) 315
AspLEI GCGC 2 cut(s) 326, 364
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 1 cut(s) 248
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 397
BmsI GCATC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 371
Bse1I ACTGG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 15, 371
BseNI ACTGG 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 328
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 15, 371
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 294
BspANI GGCC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 350
BsrI ACTGG 1 cut(s) 337
BssMI GATC 1 cut(s) 294
BssNAI GTATAC 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 410
BstHHI GCGC 2 cut(s) 326, 364
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 8
BveI ACCTGC 1 cut(s) 350
CfoI GCGC 2 cut(s) 326, 364
CviJI RGCY 4 cut(s) 8, 355, 377, 398
CviKI_1 RGCY 4 cut(s) 8, 355, 377, 398
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 379
FaiI YATR 6 cut(s) 45, 144, 184, 228, 274, 360
FblI GTMKAC 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 379
FspBI CTAG 1 cut(s) 81
FspI TGCGCA 1 cut(s) 325
GlaI GCGC 2 cut(s) 325, 363
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 372
HhaI GCGC 2 cut(s) 326, 364
Hin6I GCGC 2 cut(s) 324, 362
HinP1I GCGC 2 cut(s) 324, 362
HinfI GANTC 1 cut(s) 389
HpaII CCGG 1 cut(s) 372
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 117, 417
Hpy188III TCNNGA 1 cut(s) 393
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 375, 420
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 2 cut(s) 127, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HspAI GCGC 2 cut(s) 324, 362
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 374, 395
LpnPI CCDG 5 cut(s) 164, 318, 355, 378, 385
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 81
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 3 cut(s) 159, 289, 398
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 4 cut(s) 118, 163, 218, 400
MluNI TGGCCA 1 cut(s) 8
MnlI CCTC 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 8
MscI TGGCCA 1 cut(s) 8
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 361
NdeII GATC 1 cut(s) 294
NlaIV GGNNCC 1 cut(s) 397
NsbI TGCGCA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 397
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 1 cut(s) 294
SduI GDGCHC 1 cut(s) 379
SetI ASST 6 cut(s) 93, 183, 344, 357, 379, 431
SfaNI GCATC 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 4 cut(s) 118, 163, 218, 400
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 379
TaaI ACNGT 1 cut(s) 410
TasI AATT 4 cut(s) 118, 163, 218, 400
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TspDTI ATGAA 2 cut(s) 243, 399
VspI ATTAAT 1 cut(s) 315
XapI RAATTY 2 cut(s) 118, 218
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.