Rh4DG137700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000910
Physical Location & Seq
Reverse (-)
27421912 .. 27422940
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG137700.1

Sequence Viewer

Length: 1029 bp
ATGGATAGGCATGGTGATGGTTCAATTGTTGAAGGAGAAAGGTGGTCTTGTTCTTCTTCTGTGGGTTTAAAATCAGGATACCTAAAAAGTGTTGAAGTCGAAATCATCTGGAACCCGCAGTCGGTGCCTTTTTTCTTGAAGAGAGTTCTGATGGAGGATTTGGGTGCCCAACACCTCATAAATCACAAGTCATTGTTGGAGAATGCAGTACATGCGGTGCTGTTGGACTCGGGTTTTGTCCGAATATACTCAGATTCGGTTCCCGGTGTTCACTTTACGTCCCGTTTTTATACTTTGCCTGAAATACTGCAAAATATGGGAGGTAGTAGCAGCACCGGCAGCAGCTGTAGTAATACGATTATTGAAAGGGTAGGGCTGAGGTTTCAGAGCTTAGGGCACTTCCTGAATGTTTATGGGTATTTAATCGGCGGCGATTCTGTATACTGGGTAAGCTTGGAGGCGCACAAGGTTGCATCCATTATTGAATTCGTTTGGGCAAGCAGAATAAACGTGAATGATATTGTCAAAGTTGGATTACTTGAGATGCAAGAAACCAAAATTTTTGATTTTTGGAAGACTATTAAAGATGGAATTGCATTGCCTTTGATGATTGATCTTTGCGCAAAGGTGGGGTTGCCGTCTCCGCCCTGCCTTATGAGTCTTCCTCCGGAGCTCAAGGCCAAGATTTTGAAGTCACTGTGTGGTGTTGATATTGCAAAAGTTGAATGTACCTGCAGGGAGCTGCGACAATTAGGCAATGACGATGAGTTGTGGTGGAACAAGTTATCGCATGAGTTTCCGTGGTCGTGGAATGAGGATGATAATGATGATATGGTAGGGGGAACGAAAACGTGGAAGACGGTTTATGGTGATAAATGGAGGCAGCAAAAATATCCCTGGAATCCAAGGAATGAGAGGTCTTTCTCACACGCCAATTGGCCAAATTCTGTTCCTGTACTTCAACTCCGTCCTCTTCCTCCTCATTTTTTTTCCTCTCAAAATACTGCTTCAAATTTCCAACAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

342

Amino Acids

38.68

Weight (kDa)

6.21

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 220 - 258 6.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 622
Acc36I ACCTGC 1 cut(s) 740
AccB1I GGYRCC 2 cut(s) 124, 164
AccI GTMKAC 1 cut(s) 441
AccIII TCCGGA 1 cut(s) 667
AciI CCGC 4 cut(s) 116, 215, 429, 644
AcoI YGGCCR 1 cut(s) 938
AcsI RAATTY 4 cut(s) 485, 558, 943, 1012
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 3 cut(s) 210, 730, 957
AfiI CCNNNNNNNGG 1 cut(s) 121
AjnI CCWGG 1 cut(s) 896
AluBI AGCT 5 cut(s) 345, 390, 453, 673, 742
AluI AGCT 5 cut(s) 345, 390, 453, 673, 742
Alw21I GWGCWC 1 cut(s) 675
Alw26I GTCTC 1 cut(s) 645
AlwNI CAGNNNCTG 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 2 cut(s) 678, 938
ApeKI GCWGC 5 cut(s) 330, 339, 342, 742, 883
ApoI RAATTY 4 cut(s) 485, 558, 943, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 2 cut(s) 463, 623
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 26, 881
AvaI CYCGRG 1 cut(s) 229
BaeGI GKGCMC 2 cut(s) 169, 399
BalI TGGCCA 1 cut(s) 940
BanI GGYRCC 2 cut(s) 124, 164
BanII GRGCYC 1 cut(s) 675
BbsI GAAGAC 3 cut(s) 581, 653, 863
Bbv12I GWGCWC 1 cut(s) 675
BbvCI CCTCAGC 1 cut(s) 377
BbvI GCAGC 5 cut(s) 342, 351, 354, 729, 895
BccI CCATC 3 cut(s) 11, 145, 581
BceAI ACGGC 1 cut(s) 622
BciT130I CCWGG 1 cut(s) 898
BciVI GTATCC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 645
BfmI CTRYAG 2 cut(s) 346, 733
BfuAI ACCTGC 1 cut(s) 740
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 6 cut(s) 331, 340, 343, 430, 743, 884
BlsI GCNGC 6 cut(s) 332, 341, 344, 431, 744, 885
Bme1390I CCNGG 2 cut(s) 264, 898
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 4 cut(s) 113, 126, 166, 261
BmrFI CCNGG 2 cut(s) 264, 898
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 2 cut(s) 482, 534
BmuI ACTGGG 1 cut(s) 454
BpiI GAAGAC 3 cut(s) 581, 653, 863
BplI GAGNNNNNCTC 2 cut(s) 649, 681
Bpu10I CCTNAGC 2 cut(s) 377, 391
BpuEI CTTGAG 2 cut(s) 560, 659
BpuMI CCSGG 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 800, 896, 905
BsaWI WCCGGW 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 948, 978
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 449
Bse3DI GCAATG 2 cut(s) 596, 763
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 1 cut(s) 898
BseDI CCNNGG 3 cut(s) 800, 896, 905
BseGI GGATG 2 cut(s) 473, 823
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 2 cut(s) 596, 763
BseMII CTCAG 2 cut(s) 264, 368
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 969
BseSI GKGCMC 2 cut(s) 169, 399
BseXI GCAGC 5 cut(s) 342, 351, 354, 729, 895
BshFI GGCC 2 cut(s) 680, 940
BshNI GGYRCC 2 cut(s) 124, 164
BsiHKAI GWGCWC 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 3 cut(s) 264, 336, 668
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 645
BsmBI CGTCTC 1 cut(s) 645
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 680, 940
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 169, 399, 675
Bsp13I TCCGGA 1 cut(s) 667
Bsp143I GATC 1 cut(s) 613
BspACI CCGC 4 cut(s) 116, 215, 429, 644
BspANI GGCC 2 cut(s) 680, 940
BspCNI CTCAG 2 cut(s) 263, 369
BspEI TCCGGA 1 cut(s) 667
BspLI GGNNCC 4 cut(s) 113, 126, 166, 261
BspMAI CTGCAG 1 cut(s) 737
BspMI ACCTGC 1 cut(s) 740
BspT107I GGYRCC 2 cut(s) 124, 164
BsrDI GCAATG 2 cut(s) 596, 763
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 3 cut(s) 800, 896, 905
BssMI GATC 1 cut(s) 613
BssNAI GTATAC 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 905
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 898
Bst4CI ACNGT 2 cut(s) 699, 862
Bst6I CTCTTC 2 cut(s) 134, 978
BstAPI GCANNNNNTGC 2 cut(s) 124, 212
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 3 cut(s) 250, 377, 391
BstDSI CCRYGG 1 cut(s) 800
BstF5I GGATG 2 cut(s) 473, 823
BstHHI GCGC 2 cut(s) 463, 623
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 5 cut(s) 124, 212, 336, 339, 643
BstNI CCWGG 1 cut(s) 898
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 262, 896
BstSFI CTRYAG 2 cut(s) 346, 733
BstSLI GKGCMC 2 cut(s) 169, 399
BstV1I GCAGC 5 cut(s) 342, 351, 354, 729, 895
BstV2I GAAGAC 3 cut(s) 581, 653, 863
BstZ17I GTATAC 1 cut(s) 442
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 680, 940
BtgI CCRYGG 1 cut(s) 800
BtsCI GGATG 2 cut(s) 473, 823
BtsIMutI CAGTG 1 cut(s) 695
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 1 cut(s) 499
CaiI CAGNNNCTG 1 cut(s) 345
CfoI GCGC 2 cut(s) 463, 623
Cfr10I RCCGGY 1 cut(s) 335
Csp6I GTAC 3 cut(s) 209, 729, 956
CviAII CATG 3 cut(s) 11, 212, 791
CviJI RGCY 8 cut(s) 345, 376, 390, 453, 673, 680, 742, 940
CviKI_1 RGCY 8 cut(s) 345, 376, 390, 453, 673, 680, 742, 940
CviQI GTAC 3 cut(s) 209, 729, 956
DdeI CTNAG 3 cut(s) 250, 377, 391
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
DraI TTTAAA 1 cut(s) 69
DraIII CACNNNGTG 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 938
Eam1104I CTCTTC 2 cut(s) 134, 978
EarI CTCTTC 2 cut(s) 134, 978
EciI GGCGGA 1 cut(s) 633
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 905
Eco24I GRGCYC 1 cut(s) 675
Eco53kI GAGCTC 1 cut(s) 673
Eco88I CYCGRG 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 896
EcoT14I CCWWGG 1 cut(s) 905
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 905
Esp3I CGTCTC 1 cut(s) 645
FaeI CATG 3 cut(s) 14, 215, 794
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 10, 211, 790
FauI CCCGC 1 cut(s) 123
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 6 cut(s) 331, 340, 343, 430, 743, 884
FokI GGATG 2 cut(s) 460, 830
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 6 cut(s) 331, 340, 343, 430, 743, 884
FspI TGCGCA 1 cut(s) 622
GlaI GCGC 2 cut(s) 462, 622
GluI GCNGC 6 cut(s) 331, 340, 343, 430, 743, 884
HaeIII GGCC 2 cut(s) 680, 940
HapII CCGG 3 cut(s) 264, 336, 668
HhaI GCGC 2 cut(s) 463, 623
Hin1II CATG 3 cut(s) 14, 215, 794
Hin6I GCGC 2 cut(s) 461, 621
HinP1I GCGC 2 cut(s) 461, 621
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 5 cut(s) 227, 254, 434, 658, 901
HpaII CCGG 3 cut(s) 264, 336, 668
HphI GGTGA 2 cut(s) 26, 881
Hpy166II GTNNAC 2 cut(s) 271, 442
Hpy188I TCNGA 4 cut(s) 150, 242, 253, 387
Hpy188III TCNNGA 5 cut(s) 75, 109, 136, 403, 668
Hpy8I GTNNAC 2 cut(s) 271, 442
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 699, 862
HpyCH4IV ACGT 3 cut(s) 278, 510, 851
HpyCH4V TGCA 7 cut(s) 206, 310, 473, 547, 596, 716, 735
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 212, 336, 339, 643
HpyF3I CTNAG 3 cut(s) 250, 377, 391
HpySE526I ACGT 3 cut(s) 278, 510, 851
Hsp92II CATG 3 cut(s) 14, 215, 794
HspAI GCGC 2 cut(s) 461, 621
Kpn2I TCCGGA 1 cut(s) 667
Kzo9I GATC 1 cut(s) 613
LmnI GCTCC 2 cut(s) 670, 739
Lsp1109I GCAGC 5 cut(s) 342, 351, 354, 729, 895
LweI GCATC 2 cut(s) 482, 534
MaeII ACGT 3 cut(s) 278, 510, 851
MaeIII GTNAC 1 cut(s) 693
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 7 cut(s) 45, 48, 151, 586, 653, 868, 965
MfeI CAATTG 2 cut(s) 24, 934
MhlI GDGCHC 3 cut(s) 169, 399, 675
MlsI TGGCCA 1 cut(s) 940
MluCI AATT 8 cut(s) 24, 485, 558, 591, 749, 934, 943, 1012
MluNI TGGCCA 1 cut(s) 940
MlyI GAGTC 2 cut(s) 221, 667
MmeI TCCRAC 3 cut(s) 177, 204, 511
Mox20I TGGCCA 1 cut(s) 940
MroI TCCGGA 1 cut(s) 667
MscI TGGCCA 1 cut(s) 940
MseI TTAA 3 cut(s) 68, 422, 582
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 940
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 3 cut(s) 264, 336, 668
MspR9I CCNGG 2 cut(s) 264, 898
MunI CAATTG 2 cut(s) 24, 934
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 898
MwoI GCNNNNNNNGC 5 cut(s) 124, 212, 336, 339, 643
NciI CCSGG 1 cut(s) 264
NdeII GATC 1 cut(s) 613
NlaIII CATG 3 cut(s) 14, 215, 794
NlaIV GGNNCC 4 cut(s) 113, 126, 166, 261
NmuCI GTSAC 1 cut(s) 693
NsbI TGCGCA 1 cut(s) 622
NspI RCATGY 1 cut(s) 215
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 254, 434, 901
PkrI GCNGC 6 cut(s) 332, 341, 344, 431, 744, 885
PleI GAGTC 2 cut(s) 221, 666
PpsI GAGTC 2 cut(s) 221, 666
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 896
PspGI CCWGG 1 cut(s) 896
PspN4I GGNNCC 4 cut(s) 113, 126, 166, 261
PstI CTGCAG 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 345
RsaI GTAC 3 cut(s) 210, 730, 957
RsaNI GTAC 3 cut(s) 209, 729, 956
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 675
SaqAI TTAA 3 cut(s) 68, 422, 582
SatI GCNGC 6 cut(s) 331, 340, 343, 430, 743, 884
Sau3AI GATC 1 cut(s) 613
SbfI CCTGCAGG 1 cut(s) 737
SchI GAGTC 2 cut(s) 221, 667
ScrFI CCNGG 2 cut(s) 264, 898
SdaI CCTGCAGG 1 cut(s) 737
SduI GDGCHC 3 cut(s) 169, 399, 675
SfaNI GCATC 2 cut(s) 482, 534
SfcI CTRYAG 2 cut(s) 346, 733
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 539, 674
SmoI CTYRAG 2 cut(s) 539, 674
Sse8387I CCTGCAGG 1 cut(s) 737
Sse9I AATT 8 cut(s) 24, 485, 558, 591, 749, 934, 943, 1012
SsiI CCGC 4 cut(s) 116, 215, 429, 644
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 262, 896
StyI CCWWGG 1 cut(s) 905
TaaI ACNGT 2 cut(s) 699, 862
TaiI ACGT 3 cut(s) 281, 513, 854
TaqI TCGA 1 cut(s) 99
TasI AATT 8 cut(s) 24, 485, 558, 591, 749, 934, 943, 1012
TatI WGTACW 2 cut(s) 208, 955
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 3 cut(s) 254, 434, 901
Tru1I TTAA 3 cut(s) 68, 422, 582
Tru9I TTAA 3 cut(s) 68, 422, 582
TscAI CASTG 1 cut(s) 702
TseFI GTSAC 1 cut(s) 693
TseI GCWGC 5 cut(s) 330, 339, 342, 742, 883
Tsp45I GTSAC 1 cut(s) 693
TspGWI ACGGA 2 cut(s) 789, 956
TspRI CASTG 1 cut(s) 702
XapI RAATTY 4 cut(s) 485, 558, 943, 1012
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.