Rw4G011690

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000910
Physical Location & Seq
Reverse (-)
27657989 .. 27659453
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011690.1

Sequence Viewer

Length: 1032 bp
ATGGATAGGCATGGTGATGGTGATGGTTCAATTGTTGAAGGAGAAAGGTGGTCTTGTTCTTCTTCTGTGGGTTTAAAATCAGGATACCTAAAAAGTGTTGAAGTCGAAATCATCTGGAACCCGCAGTCGGTGCCTTTTTTCTTGAAGAGGGTTCTGATGGAGGATTTGGGTGCCCAACACCTCATAAATCACAAGTCATTGTTGGAGAATGCAGTACATGCGGTGCTGTTGGACTCGGGTTTTGTCCGAATATACTCCGATTCGGTTCCCGGTGTTCACTTTACGTCCCGTTTTTATACTTTGCCTGAAATACTGCAAAATATGGGAGGTAGTAGCAGCACCGGCAGCAGCTGTAGTAATACGATTATTGAAAGGATAGGGCTGAGGTTTCAGAGCTTAGGGCACTTCCTGAATGTTTATGGGTATTTAATCGGCGGCGATTCTGTATACCGGGTAAGCTTGGAGGCGCACAAGGTTGCATCCATTATTGAATTCGTTTGGGCAAGCAGAATAAACGTGAATGATATTGTCAAAGTTGGATTACTTGAGATGCAAGAAACCAAAATTTTTGATTTTTGGAAGACTATTAAAGATGGAATTGCATTGCCTTTGATGATTGATCTTTGCACAAAGGCGGGGTTGCCGTCTCCGCCCTGCCTTATGAGTCTTCCTCCGGAGCTCAAGGCCAAGATTTTGAAGTCACTGTGTGGTGTTGATATTGCAAAAGTTGAATGTACCTGCAGGGAGCTGCGACAATTAGGCAATGACGATGAGTTGTGGTGGAACAAGTTATCGCATGAGTTTCCGTGGTCGTGGAATGAGGATGATAATGATGATATGGTAGGGGGAACGAAAACGTGGAAGACGGTTTATGGTGATAAATGGAGGCAGCAAAAATATCCCTGGAATCCAAGGAATGGGAGGTCTTTCTCACACGCCAATTGGCCAAATTCTGGTCCTGTACTTCAACTCCGTCCTCTTCCTCATTTTTTTTCCTCTCAATATACTGCTTCAAATTTCCAACAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

343

Amino Acids

38.67

Weight (kDa)

6.37

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 222 - 260 6.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 746
AccB1I GGYRCC 2 cut(s) 130, 170
AccB7I CCANNNNNTGG 2 cut(s) 917, 953
AccI GTMKAC 1 cut(s) 447
AccIII TCCGGA 1 cut(s) 673
AciI CCGC 5 cut(s) 122, 221, 435, 635, 650
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 4 cut(s) 491, 564, 949, 1015
AdeI CACNNNGTG 1 cut(s) 707
AfaI GTAC 3 cut(s) 216, 736, 963
AfiI CCNNNNNNNGG 3 cut(s) 127, 917, 953
AjnI CCWGG 1 cut(s) 902
AluBI AGCT 5 cut(s) 351, 396, 459, 679, 748
AluI AGCT 5 cut(s) 351, 396, 459, 679, 748
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 1 cut(s) 651
AlwNI CAGNNNCTG 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 235
Aor13HI TCCGGA 1 cut(s) 673
AoxI GGCC 2 cut(s) 684, 944
ApeKI GCWGC 5 cut(s) 336, 345, 348, 748, 889
ApoI RAATTY 4 cut(s) 491, 564, 949, 1015
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 956
AsuC2I CCSGG 2 cut(s) 270, 452
AsuHPI GGTGA 3 cut(s) 26, 32, 887
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 956
BaeGI GKGCMC 2 cut(s) 175, 405
BalI TGGCCA 1 cut(s) 946
BanI GGYRCC 2 cut(s) 130, 170
BanII GRGCYC 1 cut(s) 681
BbsI GAAGAC 3 cut(s) 587, 659, 869
Bbv12I GWGCWC 1 cut(s) 681
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 5 cut(s) 348, 357, 360, 735, 901
BccI CCATC 4 cut(s) 11, 17, 151, 587
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 1 cut(s) 904
BciVI GTATCC 1 cut(s) 77
BcnI CCSGG 2 cut(s) 270, 452
BcoDI GTCTC 1 cut(s) 651
BfmI CTRYAG 2 cut(s) 352, 739
BfuAI ACCTGC 1 cut(s) 746
BfuI GTATCC 1 cut(s) 77
BisI GCNGC 6 cut(s) 337, 346, 349, 436, 749, 890
BlsI GCNGC 6 cut(s) 338, 347, 350, 437, 750, 891
Bme1390I CCNGG 3 cut(s) 270, 452, 904
Bme18I GGWCC 1 cut(s) 956
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 4 cut(s) 119, 132, 172, 267
BmrFI CCNGG 3 cut(s) 270, 452, 904
BmsI GCATC 2 cut(s) 488, 540
BpiI GAAGAC 3 cut(s) 587, 659, 869
BplI GAGNNNNNCTC 2 cut(s) 655, 687
Bpu10I CCTNAGC 2 cut(s) 383, 397
BpuEI CTTGAG 2 cut(s) 566, 665
BpuMI CCSGG 2 cut(s) 270, 452
BsaJI CCNNGG 3 cut(s) 806, 902, 911
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 917, 953
Bse118I RCCGGY 1 cut(s) 341
Bse3DI GCAATG 2 cut(s) 602, 769
BseAI TCCGGA 1 cut(s) 673
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 3 cut(s) 806, 902, 911
BseGI GGATG 2 cut(s) 479, 829
BseLI CCNNNNNNNGG 3 cut(s) 127, 917, 953
BseMI GCAATG 2 cut(s) 602, 769
BseMII CTCAG 1 cut(s) 374
BseSI GKGCMC 2 cut(s) 175, 405
BseXI GCAGC 5 cut(s) 348, 357, 360, 735, 901
BshFI GGCC 2 cut(s) 686, 946
BshNI GGYRCC 2 cut(s) 130, 170
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 4 cut(s) 270, 342, 451, 674
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 3 cut(s) 127, 917, 953
BsmAI GTCTC 1 cut(s) 651
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 686, 946
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 3 cut(s) 175, 405, 681
Bsp13I TCCGGA 1 cut(s) 673
Bsp143I GATC 1 cut(s) 619
BspACI CCGC 5 cut(s) 122, 221, 435, 635, 650
BspANI GGCC 2 cut(s) 686, 946
BspCNI CTCAG 1 cut(s) 375
BspEI TCCGGA 1 cut(s) 673
BspLI GGNNCC 4 cut(s) 119, 132, 172, 267
BspMAI CTGCAG 1 cut(s) 743
BspMI ACCTGC 1 cut(s) 746
BspT107I GGYRCC 2 cut(s) 130, 170
BsrDI GCAATG 2 cut(s) 602, 769
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 806, 902, 911
BssMI GATC 1 cut(s) 619
BssNAI GTATAC 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 911
Bst1107I GTATAC 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 2 cut(s) 705, 868
Bst6I CTCTTC 2 cut(s) 140, 984
BstAPI GCANNNNNTGC 2 cut(s) 130, 218
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 2 cut(s) 383, 397
BstDSI CCRYGG 1 cut(s) 806
BstF5I GGATG 2 cut(s) 479, 829
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 1 cut(s) 622
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 1 cut(s) 619
BstMWI GCNNNNNNNGC 5 cut(s) 130, 218, 342, 345, 649
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 268, 450, 902
BstSFI CTRYAG 2 cut(s) 352, 739
BstSLI GKGCMC 2 cut(s) 175, 405
BstV1I GCAGC 5 cut(s) 348, 357, 360, 735, 901
BstV2I GAAGAC 3 cut(s) 587, 659, 869
BstZ17I GTATAC 1 cut(s) 448
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 686, 946
BtgI CCRYGG 1 cut(s) 806
BtsCI GGATG 2 cut(s) 479, 829
BtsIMutI CAGTG 1 cut(s) 701
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 1 cut(s) 505
CaiI CAGNNNCTG 1 cut(s) 351
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 956
Csp6I GTAC 3 cut(s) 215, 735, 962
CviAII CATG 3 cut(s) 11, 218, 797
CviJI RGCY 8 cut(s) 351, 382, 396, 459, 679, 686, 748, 946
CviKI_1 RGCY 8 cut(s) 351, 382, 396, 459, 679, 686, 748, 946
CviQI GTAC 3 cut(s) 215, 735, 962
DdeI CTNAG 2 cut(s) 383, 397
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
DraI TTTAAA 1 cut(s) 75
DraIII CACNNNGTG 1 cut(s) 707
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 2 cut(s) 140, 984
EarI CTCTTC 2 cut(s) 140, 984
EciI GGCGGA 1 cut(s) 639
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 911
Eco24I GRGCYC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 956
Eco53kI GAGCTC 1 cut(s) 679
Eco88I CYCGRG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 679
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 1 cut(s) 911
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 911
Esp3I CGTCTC 1 cut(s) 651
FaeI CATG 3 cut(s) 14, 221, 800
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 1 cut(s) 271
FatI CATG 3 cut(s) 10, 217, 796
FauI CCCGC 2 cut(s) 129, 628
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 6 cut(s) 337, 346, 349, 436, 749, 890
FokI GGATG 2 cut(s) 466, 836
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 6 cut(s) 337, 346, 349, 436, 749, 890
GlaI GCGC 1 cut(s) 468
GluI GCNGC 6 cut(s) 337, 346, 349, 436, 749, 890
HaeIII GGCC 2 cut(s) 686, 946
HapII CCGG 4 cut(s) 270, 342, 451, 674
HhaI GCGC 1 cut(s) 469
Hin1II CATG 3 cut(s) 14, 221, 800
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 5 cut(s) 233, 260, 440, 664, 907
HpaII CCGG 4 cut(s) 270, 342, 451, 674
HphI GGTGA 3 cut(s) 26, 32, 887
Hpy166II GTNNAC 2 cut(s) 277, 448
Hpy188I TCNGA 4 cut(s) 156, 248, 259, 393
Hpy188III TCNNGA 5 cut(s) 81, 115, 142, 409, 674
Hpy8I GTNNAC 2 cut(s) 277, 448
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 705, 868
HpyCH4IV ACGT 3 cut(s) 284, 516, 857
HpyCH4V TGCA 8 cut(s) 212, 316, 479, 553, 602, 627, 722, 741
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 218, 342, 345, 649
HpyF3I CTNAG 2 cut(s) 383, 397
HpySE526I ACGT 3 cut(s) 284, 516, 857
Hsp92II CATG 3 cut(s) 14, 221, 800
HspAI GCGC 1 cut(s) 467
Kpn2I TCCGGA 1 cut(s) 673
Kzo9I GATC 1 cut(s) 619
LmnI GCTCC 2 cut(s) 676, 745
Lsp1109I GCAGC 5 cut(s) 348, 357, 360, 735, 901
LweI GCATC 2 cut(s) 488, 540
MaeII ACGT 3 cut(s) 284, 516, 857
MaeIII GTNAC 1 cut(s) 699
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MboII GAAGA 7 cut(s) 51, 54, 157, 592, 659, 874, 971
MfeI CAATTG 2 cut(s) 30, 940
MhlI GDGCHC 3 cut(s) 175, 405, 681
MlsI TGGCCA 1 cut(s) 946
MluCI AATT 8 cut(s) 30, 491, 564, 597, 755, 940, 949, 1015
MluNI TGGCCA 1 cut(s) 946
MlyI GAGTC 2 cut(s) 227, 673
MmeI TCCRAC 3 cut(s) 183, 210, 517
Mox20I TGGCCA 1 cut(s) 946
MroI TCCGGA 1 cut(s) 673
MscI TGGCCA 1 cut(s) 946
MseI TTAA 3 cut(s) 74, 428, 588
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 946
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 4 cut(s) 270, 342, 451, 674
MspR9I CCNGG 3 cut(s) 270, 452, 904
MunI CAATTG 2 cut(s) 30, 940
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 1 cut(s) 904
MwoI GCNNNNNNNGC 5 cut(s) 130, 218, 342, 345, 649
NciI CCSGG 2 cut(s) 270, 452
NdeII GATC 1 cut(s) 619
NlaIII CATG 3 cut(s) 14, 221, 800
NlaIV GGNNCC 4 cut(s) 119, 132, 172, 267
NmuCI GTSAC 1 cut(s) 699
NspI RCATGY 1 cut(s) 221
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 260, 440, 907
PflMI CCANNNNNTGG 2 cut(s) 917, 953
PkrI GCNGC 6 cut(s) 338, 347, 350, 437, 750, 891
PleI GAGTC 2 cut(s) 227, 672
PpsI GAGTC 2 cut(s) 227, 672
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 902
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 4 cut(s) 119, 132, 172, 267
PspPI GGNCC 1 cut(s) 956
PstI CTGCAG 1 cut(s) 743
PstNI CAGNNNCTG 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 351
RsaI GTAC 3 cut(s) 216, 736, 963
RsaNI GTAC 3 cut(s) 215, 735, 962
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 681
SaqAI TTAA 3 cut(s) 74, 428, 588
SatI GCNGC 6 cut(s) 337, 346, 349, 436, 749, 890
Sau3AI GATC 1 cut(s) 619
Sau96I GGNCC 1 cut(s) 956
SbfI CCTGCAGG 1 cut(s) 743
SchI GAGTC 2 cut(s) 227, 673
ScrFI CCNGG 3 cut(s) 270, 452, 904
SdaI CCTGCAGG 1 cut(s) 743
SduI GDGCHC 3 cut(s) 175, 405, 681
SfaNI GCATC 2 cut(s) 488, 540
SfcI CTRYAG 2 cut(s) 352, 739
SinI GGWCC 1 cut(s) 956
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 545, 680
SmoI CTYRAG 2 cut(s) 545, 680
Sse8387I CCTGCAGG 1 cut(s) 743
Sse9I AATT 8 cut(s) 30, 491, 564, 597, 755, 940, 949, 1015
SsiI CCGC 5 cut(s) 122, 221, 435, 635, 650
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 3 cut(s) 268, 450, 902
StyI CCWWGG 1 cut(s) 911
TaaI ACNGT 2 cut(s) 705, 868
TaiI ACGT 3 cut(s) 287, 519, 860
TaqI TCGA 1 cut(s) 105
TasI AATT 8 cut(s) 30, 491, 564, 597, 755, 940, 949, 1015
TatI WGTACW 2 cut(s) 214, 961
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 3 cut(s) 260, 440, 907
Tru1I TTAA 3 cut(s) 74, 428, 588
Tru9I TTAA 3 cut(s) 74, 428, 588
TscAI CASTG 1 cut(s) 708
TseFI GTSAC 1 cut(s) 699
TseI GCWGC 5 cut(s) 336, 345, 348, 748, 889
Tsp45I GTSAC 1 cut(s) 699
TspGWI ACGGA 2 cut(s) 795, 962
TspRI CASTG 1 cut(s) 708
Van91I CCANNNNNTGG 2 cut(s) 917, 953
VpaK11BI GGWCC 1 cut(s) 956
XapI RAATTY 4 cut(s) 491, 564, 949, 1015
XceI RCATGY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.