Rh4CG063700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000910
Physical Location & Seq
Reverse (-)
11956861 .. 11957397
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG063700.1

Sequence Viewer

Length: 537 bp
ATGGTGTTTCCCAGTTTGAGTCCATTCTTGGCGGCCTACCGTGACGGTTACCCTGTATGGTTGGATGAGAAGAAGTTTGCGCCTGTCATGATCGATTTTGTTTGGGGAAACAATAGATTTGATAATTATCATGTGAATGTGGGATTACTTGAGAGACAAGTTATGGAGATTAGAAAGATTGTGAAGAATGAGATTGCATTGCCATTACTAATAGATCTTTGTGCAGTCACCGGATTGTGTGCTCCACCGTGCCTTATGGACCTTCCTGCAGAGCTTGGAGCAAAGATTTTGAAGTCGCTGCCTGGTGAGGATATTGCAAGAGTGTCATGTGTCTGTAAGGAGCTGCGAAATCTGGTTAATGATGATGAGTTGTGGAAGCAAAAGTTTGCCGAGGAGTTTGTCATAAGTTGGACTGAAGTTGGAGACCGCAAGTCTTGGAAGTCCTGGTTTGTTGCAAACTGGAACAACAAGAAGGAAACAAATAAAAAGATTATAGTGGGATATTGGTGGCGCCGGAAAAAATATGATAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

178

Amino Acids

20.84

Weight (kDa)

8.54

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 85 - 126 2.2e-09 F-box domain
F-box-like PF12937 87 - 129 1.9e-11 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 510
AciI CCGC 2 cut(s) 32, 427
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 511
AgsI TTSAA 1 cut(s) 292
AhdI GACNNNNNGTC 1 cut(s) 430
AjnI CCWGG 2 cut(s) 301, 443
AluBI AGCT 2 cut(s) 274, 343
AluI AGCT 2 cut(s) 274, 343
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 148, 417
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 298, 343
AspLEI GCGC 2 cut(s) 82, 513
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 220, 317
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 2 cut(s) 285, 330
BciT130I CCWGG 2 cut(s) 303, 445
BcoDI GTCTC 2 cut(s) 148, 417
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 514
BglII AGATCT 1 cut(s) 214
BisI GCNGC 3 cut(s) 33, 299, 344
BlsI GCNGC 3 cut(s) 34, 300, 345
Bme1390I CCNGG 2 cut(s) 303, 445
Bme18I GGWCC 1 cut(s) 259
BmeRI GACNNNNNGTC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 512
BmrFI CCNGG 2 cut(s) 303, 445
BmrI ACTGGG 1 cut(s) 6
BmuI ACTGGG 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 511
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 12, 464
Bse3DI GCAATG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 2 cut(s) 303, 445
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 126
BseMI GCAATG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 12, 464
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 285, 330
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 510
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 231, 514
BsmAI GTCTC 2 cut(s) 148, 417
BsnI GGCC 1 cut(s) 35
Bso31I GGTCTC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 90, 214
BspACI CCGC 2 cut(s) 32, 427
BspANI GGCC 1 cut(s) 35
BspDI ATCGAT 1 cut(s) 93
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 512
BspMAI CTGCAG 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 510
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 197
BsrI ACTGG 2 cut(s) 12, 464
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 90, 214
BssNI GRCGYC 1 cut(s) 511
Bst2UI CCWGG 2 cut(s) 303, 445
Bst4CI ACNGT 3 cut(s) 41, 47, 249
BstACI GRCGYC 1 cut(s) 511
BstEII GGTNACC 1 cut(s) 47
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 2 cut(s) 82, 513
BstKTI GATC 2 cut(s) 93, 217
BstMAI GTCTC 2 cut(s) 148, 417
BstMBI GATC 2 cut(s) 90, 214
BstNI CCWGG 2 cut(s) 303, 445
BstPI GGTNACC 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 301, 443
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 285, 330
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 93
BtsCI GGATG 1 cut(s) 70
CciI TCATGA 1 cut(s) 87
CfoI GCGC 2 cut(s) 82, 513
Cfr13I GGNCC 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 93
CviAII CATG 3 cut(s) 88, 131, 327
CviJI RGCY 3 cut(s) 35, 274, 343
CviKI_1 RGCY 3 cut(s) 35, 274, 343
DinI GGCGCC 1 cut(s) 512
DpnI GATC 2 cut(s) 92, 216
DpnII GATC 2 cut(s) 90, 214
DriI GACNNNNNGTC 1 cut(s) 430
Eam1105I GACNNNNNGTC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 47
EcoO65I GGTNACC 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 301, 443
EgeI GGCGCC 1 cut(s) 512
EheI GGCGCC 1 cut(s) 512
FaeI CATG 3 cut(s) 91, 134, 330
FaiI YATR 9 cut(s) 58, 89, 132, 164, 257, 328, 404, 494, 525
FatI CATG 3 cut(s) 87, 130, 326
Fnu4HI GCNGC 3 cut(s) 33, 299, 344
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 33, 299, 344
GlaI GCGC 2 cut(s) 81, 512
GluI GCNGC 3 cut(s) 33, 299, 344
HaeII RGCGCY 1 cut(s) 514
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 231, 514
HhaI GCGC 2 cut(s) 82, 513
Hin1I GRCGYC 1 cut(s) 511
Hin1II CATG 3 cut(s) 91, 134, 330
Hin6I GCGC 2 cut(s) 80, 511
HinP1I GCGC 2 cut(s) 80, 511
HinfI GANTC 1 cut(s) 19
HpaII CCGG 2 cut(s) 231, 514
HphI GGTGA 2 cut(s) 220, 317
Hpy188III TCNNGA 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 272, 466
HpyCH4III ACNGT 3 cut(s) 41, 47, 249
HpyCH4V TGCA 5 cut(s) 197, 224, 269, 317, 455
Hsp92I GRCGYC 1 cut(s) 511
Hsp92II CATG 3 cut(s) 91, 134, 330
HspAI GCGC 2 cut(s) 80, 511
KasI GGCGCC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 90, 214
LmnI GCTCC 3 cut(s) 247, 278, 340
Lsp1109I GCAGC 2 cut(s) 285, 330
MaeIII GTNAC 3 cut(s) 41, 47, 226
MalI GATC 2 cut(s) 92, 216
MboI GATC 2 cut(s) 90, 214
MboII GAAGA 2 cut(s) 82, 196
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 124
Mly113I GGCGCC 1 cut(s) 511
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 3 cut(s) 42, 389, 400
MnlI CCTC 2 cut(s) 301, 385
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 2 cut(s) 231, 514
MspR9I CCNGG 2 cut(s) 303, 445
MvaI CCWGG 2 cut(s) 303, 445
NarI GGCGCC 1 cut(s) 511
NdeII GATC 2 cut(s) 90, 214
NlaIII CATG 3 cut(s) 91, 134, 330
NlaIV GGNNCC 1 cut(s) 512
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 41, 226
PagI TCATGA 1 cut(s) 87
PkrI GCNGC 3 cut(s) 34, 300, 345
PleI GAGTC 1 cut(s) 27
PluTI GGCGCC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 301, 443
PspEI GGTNACC 1 cut(s) 47
PspGI CCWGG 2 cut(s) 301, 443
PspN4I GGNNCC 1 cut(s) 512
PspPI GGNCC 1 cut(s) 259
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 3 cut(s) 33, 299, 344
Sau3AI GATC 2 cut(s) 90, 214
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 303, 445
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 264, 276, 345
SfcI CTRYAG 1 cut(s) 267
SfoI GGCGCC 1 cut(s) 512
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 124
SsiI CCGC 2 cut(s) 32, 427
SspDI GGCGCC 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 301, 443
TaaI ACNGT 3 cut(s) 41, 47, 249
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 124
TauI GCSGC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseFI GTSAC 2 cut(s) 41, 226
TseI GCWGC 2 cut(s) 298, 343
Tsp45I GTSAC 2 cut(s) 41, 226
VpaK11BI GGWCC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.