Rh4BG141900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000910
Physical Location & Seq
Reverse (-)
25168497 .. 25169827
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG141900.1

Sequence Viewer

Length: 1056 bp
ATGGGAACTTCCATTGCTGAAGGAGAAAGGTGGTGTTGTTCTGCGGGTTTGAAATCAGGAACCCTAAAAAGCGTGGAGATTGAAATCTTGTGGAACAAACACTCAGTGCCCTTTTTCTTGAGGAGGGTTCTTATGGAGGAGTTGGGAGCCCAACATTTCCCATGCAGTAATCACCGGTTATTATTGGAGACTGCAGTACATGCAGTGCTCCTAGACTCCGGTTTTGTCCGCTTTGACTCCGATTCGGTTTCAGGTGTCTCCGGTATGTCCCTCTCTTATACTGTGCCTGATATTTTGCAAAATCTAGGAGGTAGTATCCAAGGAATTGGGTTGAGATTTGAGAAGTTGGATAAATCTGTAAGGGTTAATGGGTCTTTAACCGGCGAGGATTCTGTGTACTCGGTGAGCTTGGAGGTGGAGAAGGTTGCATCCTTTATCGAATTCCTTTGGGCAAGTAAAGTTGATGTGAATGATATTGTTACAGTAGGACTACTTGAGAAGCAAGAAACACAAGTTTTTAATTTTTGGAGGACCATCAAAGATGAAATTGCATTGCCATTAATGATTGATCTTTGCGCAAAGGCTGGGTTACCCTCTCCACCTTGCCTTATGAGTCTTCCTCCAGAGCTCAAGACAAAGATTTTATGGTCACTATCTGGTGTGAATATTGCAGCAGTAGAATGTGTGTGCAAGGAGCTGCAGAAACTTGGGAATGACGGTGAGTTGTGGAAGCACAGGTTAGGGCAGCAGTTTCCTGGCGAGTTAATGAAGAAGAAGAAGAAGAAGAAGAAGAATGATATGCAAACAACAGAGTGGAAGATGGTGTTTCGAGAAAGATGGAGGCAACACAGGCGAGTGAGGGAGGCATCAAGCAGAGAATATTGTAAGAGGGAGGAGAAGAGGAAGAGGCCTTTACCATTCCGTTCTCTTGATTCTGAACAAGAGGAGTATTGGAAAAATTCTCCTCAAACAAGACGGAGAATTGGACTAGGACCGAGATCTGCTATAGGAAAGCTCCTCGAATCCTCGAATGATGACGAACCATTTTACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

351

Amino Acids

40.01

Weight (kDa)

8.9

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 205 - 245 7e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 577
AciI CCGC 2 cut(s) 44, 229
AcsI RAATTY 2 cut(s) 440, 958
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 2 cut(s) 198, 398
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 52, 83
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 4 cut(s) 408, 628, 697, 1015
AluI AGCT 4 cut(s) 408, 628, 697, 1015
Alw21I GWGCWC 2 cut(s) 210, 630
Alw26I GTCTC 2 cut(s) 182, 262
AoxI GGCC 1 cut(s) 908
ApeKI GCWGC 3 cut(s) 671, 697, 745
ApoI RAATTY 2 cut(s) 440, 958
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AseI ATTAAT 1 cut(s) 560
AsiGI ACCGGT 1 cut(s) 174
AspLEI GCGC 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 531, 992
AsuHPI GGTGA 3 cut(s) 164, 415, 731
AvaII GGWCC 2 cut(s) 531, 992
BaeGI GKGCMC 1 cut(s) 111
BanII GRGCYC 2 cut(s) 151, 630
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 2 cut(s) 210, 630
BbvI GCAGC 3 cut(s) 683, 684, 757
BccI CCATC 3 cut(s) 542, 814, 831
BciT130I CCWGG 1 cut(s) 756
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 2 cut(s) 182, 262
BfaI CTAG 4 cut(s) 212, 305, 989, 1054
BfmI CTRYAG 3 cut(s) 192, 698, 1005
BfuI GTATCC 1 cut(s) 326
BglII AGATCT 1 cut(s) 998
BisI GCNGC 3 cut(s) 672, 698, 746
BlsI GCNGC 3 cut(s) 673, 699, 747
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 2 cut(s) 531, 992
BmgT120I GGNCC 2 cut(s) 531, 992
BmiI GGNNCC 2 cut(s) 61, 148
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 2 cut(s) 437, 875
BpiI GAAGAC 1 cut(s) 608
BplI GAGNNNNNCTC 2 cut(s) 604, 636
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 3 cut(s) 139, 515, 614
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 3 cut(s) 174, 218, 260
Bse118I RCCGGY 2 cut(s) 174, 380
Bse3DI GCAATG 2 cut(s) 12, 551
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 428
BseJI GATNNNNATC 1 cut(s) 83
BseMI GCAATG 2 cut(s) 12, 551
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 6 cut(s) 136, 152, 908, 954, 959, 1007
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 3 cut(s) 683, 684, 757
BseYI CCCAGC 1 cut(s) 584
BshFI GGCC 1 cut(s) 910
BshTI ACCGGT 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 210, 630
BsiSI CCGG 4 cut(s) 175, 219, 261, 381
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 182, 262
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 910
Bsp1286I GDGCHC 4 cut(s) 111, 151, 210, 630
Bsp143I GATC 2 cut(s) 568, 998
BspACI CCGC 2 cut(s) 44, 229
BspANI GGCC 1 cut(s) 910
BspCNI CTCAG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 61, 148
BspMAI CTGCAG 2 cut(s) 196, 702
BsrDI GCAATG 2 cut(s) 12, 551
BsrFI RCCGGY 2 cut(s) 174, 380
BssAI RCCGGY 2 cut(s) 174, 380
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 568, 998
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 3 cut(s) 283, 484, 719
Bst6I CTCTTC 2 cut(s) 893, 899
BstAPI GCANNNNNTGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 103
BstEII GGTNACC 1 cut(s) 588
BstF5I GGATG 1 cut(s) 428
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 2 cut(s) 571, 1001
BstMAI GTCTC 2 cut(s) 182, 262
BstMBI GATC 2 cut(s) 568, 998
BstMWI GCNNNNNNNGC 2 cut(s) 200, 850
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 3 cut(s) 192, 698, 1005
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 683, 684, 757
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 998
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 1 cut(s) 998
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 910
BtsCI GGATG 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 111, 210
CfoI GCGC 1 cut(s) 578
Cfr10I RCCGGY 2 cut(s) 174, 380
Cfr13I GGNCC 2 cut(s) 531, 992
Csp6I GTAC 2 cut(s) 197, 397
CspAI ACCGGT 1 cut(s) 174
CviAII CATG 2 cut(s) 162, 200
CviJI RGCY 7 cut(s) 149, 408, 584, 628, 697, 910, 1015
CviKI_1 RGCY 7 cut(s) 149, 408, 584, 628, 697, 910, 1015
CviQI GTAC 2 cut(s) 197, 397
DdeI CTNAG 1 cut(s) 103
DpnI GATC 2 cut(s) 570, 1000
DpnII GATC 2 cut(s) 568, 998
DraIII CACNNNGTG 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 893, 899
EarI CTCTTC 2 cut(s) 893, 899
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 910
Eco24I GRGCYC 2 cut(s) 151, 630
Eco47I GGWCC 2 cut(s) 531, 992
Eco53kI GAGCTC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 588
EcoICRI GAGCTC 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 2 cut(s) 151, 630
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 165, 203
FaiI YATR 9 cut(s) 134, 163, 201, 266, 279, 611, 646, 800, 1007
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 161, 199
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 672, 698, 746
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 2 cut(s) 151, 630
Fsp4HI GCNGC 3 cut(s) 672, 698, 746
FspBI CTAG 4 cut(s) 212, 305, 989, 1054
FspI TGCGCA 1 cut(s) 577
GlaI GCGC 1 cut(s) 577
GluI GCNGC 3 cut(s) 672, 698, 746
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 1 cut(s) 910
HapII CCGG 4 cut(s) 175, 219, 261, 381
HhaI GCGC 1 cut(s) 578
Hin1II CATG 2 cut(s) 165, 203
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HinfI GANTC 7 cut(s) 215, 236, 242, 389, 613, 932, 1022
HpaII CCGG 4 cut(s) 175, 219, 261, 381
HphI GGTGA 3 cut(s) 164, 415, 731
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 241, 937
Hpy188III TCNNGA 6 cut(s) 57, 118, 623, 631, 830, 929
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 14, 415
HpyCH4III ACNGT 3 cut(s) 283, 484, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 850
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 2 cut(s) 165, 203
HspAI GCGC 1 cut(s) 576
Kzo9I GATC 2 cut(s) 568, 998
LmnI GCTCC 4 cut(s) 146, 213, 694, 1020
Lsp1109I GCAGC 3 cut(s) 683, 684, 757
LweI GCATC 2 cut(s) 437, 875
MaeI CTAG 4 cut(s) 212, 305, 989, 1054
MaeIII GTNAC 3 cut(s) 478, 588, 648
MalI GATC 2 cut(s) 570, 1000
MboI GATC 2 cut(s) 568, 998
MflI RGATCY 1 cut(s) 998
MhlI GDGCHC 4 cut(s) 111, 151, 210, 630
MluCI AATT 6 cut(s) 324, 440, 520, 546, 958, 981
MlyI GAGTC 3 cut(s) 209, 230, 622
MmeI TCCRAC 1 cut(s) 327
MseI TTAA 5 cut(s) 366, 377, 519, 560, 764
MspI CCGG 4 cut(s) 175, 219, 261, 381
MspR9I CCNGG 1 cut(s) 756
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 2 cut(s) 200, 850
NdeII GATC 2 cut(s) 568, 998
NlaIII CATG 2 cut(s) 165, 203
NlaIV GGNNCC 2 cut(s) 61, 148
NmuCI GTSAC 1 cut(s) 648
NsbI TGCGCA 1 cut(s) 577
NspI RCATGY 1 cut(s) 203
PceI AGGCCT 1 cut(s) 910
PfeI GAWTC 4 cut(s) 242, 389, 932, 1022
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 3 cut(s) 673, 699, 747
PleI GAGTC 3 cut(s) 209, 230, 621
PpsI GAGTC 3 cut(s) 209, 230, 621
PshBI ATTAAT 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 61, 148
PspPI GGNCC 2 cut(s) 531, 992
PstI CTGCAG 2 cut(s) 196, 702
PsuI RGATCY 1 cut(s) 998
RsaI GTAC 2 cut(s) 198, 398
RsaNI GTAC 2 cut(s) 197, 397
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 5 cut(s) 366, 377, 519, 560, 764
SatI GCNGC 3 cut(s) 672, 698, 746
Sau3AI GATC 2 cut(s) 568, 998
Sau96I GGNCC 2 cut(s) 531, 992
SchI GAGTC 3 cut(s) 209, 230, 622
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 4 cut(s) 111, 151, 210, 630
SfaNI GCATC 2 cut(s) 437, 875
SfcI CTRYAG 3 cut(s) 192, 698, 1005
SinI GGWCC 2 cut(s) 531, 992
SmlI CTYRAG 3 cut(s) 118, 494, 629
SmoI CTYRAG 3 cut(s) 118, 494, 629
Sse9I AATT 6 cut(s) 324, 440, 520, 546, 958, 981
SseBI AGGCCT 1 cut(s) 910
SsiI CCGC 2 cut(s) 44, 229
SspI AATATT 2 cut(s) 667, 881
SspMI CTAG 4 cut(s) 212, 305, 989, 1054
SstI GAGCTC 1 cut(s) 630
StuI AGGCCT 1 cut(s) 910
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 3 cut(s) 283, 484, 719
TaqI TCGA 4 cut(s) 438, 829, 1020, 1028
TaqII GACCGA 1 cut(s) 1009
TasI AATT 6 cut(s) 324, 440, 520, 546, 958, 981
TatI WGTACW 2 cut(s) 196, 396
TfiI GAWTC 4 cut(s) 242, 389, 932, 1022
Tru1I TTAA 5 cut(s) 366, 377, 519, 560, 764
Tru9I TTAA 5 cut(s) 366, 377, 519, 560, 764
TscAI CASTG 2 cut(s) 111, 210
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 3 cut(s) 671, 697, 745
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 2 cut(s) 558, 782
TspGWI ACGGA 2 cut(s) 911, 991
TspRI CASTG 2 cut(s) 111, 210
VpaK11BI GGWCC 2 cut(s) 531, 992
VspI ATTAAT 1 cut(s) 560
XapI RAATTY 2 cut(s) 440, 958
XceI RCATGY 1 cut(s) 203
XspI CTAG 4 cut(s) 212, 305, 989, 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.