Rmu_sc0010817.1_g000012

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010817.1
OG0000910
Physical Location & Seq
Forward (+)
31993 .. 32793
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010817.1_g000012.1.cds

Sequence Viewer

Length: 801 bp
atggaaatcgatgatattggttctgataacaggcactcggtgcacgactccttgaggagagtactgagggagaaactgactgataaccaccctggtaataagctcaagatattgaaattagttgtacatgtggctctcttagagtccggttttgtgcggttcaacccaggttcagtttcgggtaaatcggttttctatactttgcctgagattctacaaaatgatggtcaggttattgaagggattgtgatggtgtttctcagtttgagtccattcttggcagcctaccgtgacggttaccctgtgtggttggatgagaagaagtttgcgccagccatgatcgattttgtttggggaaacaatagatttaataattatcatgtgaatgtgggattacttgagagacaagttatggagattagaaagattgtgaagaatgagattgcattgccattactaatagatctttgtgcagtcaccggtttgcgtgctccaccgtgccttatgggccttcctgcagagcttggagcaaagattttgaagtcgctgcctggtgaggatattgcaagagtgtcatgtgtctgtaaggagctgcgaaatctggctaatgatgatgagttgtggaagcaaaagtttgccgaggaatttgtcgtaaattggactgaagttggagacggcaagtcttggaagtcctggtttgttgtaaactggaacaacaagaaggaaacaaataaaaagattatagtgggatattggtggcgccggaaaaaatatgatagggagtggcctcctttgcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH

Protein Analysis

266

Amino Acids

30.63

Weight (kDa)

8.93

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 759
AciI CCGC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 760
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 63, 126
AflIII ACRYGT 1 cut(s) 127
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 115, 163, 239, 541
AhdI GACNNNNNGTC 1 cut(s) 679
AjnI CCWGG 4 cut(s) 91, 166, 550, 692
AluBI AGCT 3 cut(s) 103, 523, 592
AluI AGCT 3 cut(s) 103, 523, 592
Alw21I GWGCWC 2 cut(s) 45, 493
Alw26I GTCTC 2 cut(s) 397, 666
Alw44I GTGCAC 1 cut(s) 41
AoxI GGCC 2 cut(s) 508, 785
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 281, 547, 592
ApoI RAATTY 1 cut(s) 644
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AsiGI ACCGGT 1 cut(s) 479
AspLEI GCGC 3 cut(s) 331, 762, 798
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 469, 566
BaeGI GKGCMC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 759
Bbv12I GWGCWC 2 cut(s) 45, 493
BbvI GCAGC 3 cut(s) 293, 534, 579
BccI CCATC 2 cut(s) 218, 244
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 4 cut(s) 93, 168, 552, 694
BcoDI GTCTC 2 cut(s) 397, 666
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 507
BglII AGATCT 1 cut(s) 463
BisI GCNGC 3 cut(s) 282, 548, 593
BlsI GCNGC 3 cut(s) 283, 549, 594
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 4 cut(s) 93, 168, 552, 694
BmeRI GACNNNNNGTC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 761
BmrFI CCNGG 4 cut(s) 93, 168, 552, 694
BpuEI CTTGAG 3 cut(s) 73, 89, 419
Bsa29I ATCGAT 2 cut(s) 9, 342
BsaHI GRCGYC 1 cut(s) 760
BsaJI CCNNGG 3 cut(s) 91, 166, 639
BsaWI WCCGGW 2 cut(s) 146, 479
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 1 cut(s) 713
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 4 cut(s) 93, 168, 552, 694
BseCI ATCGAT 2 cut(s) 9, 342
BseDI CCNNGG 3 cut(s) 91, 166, 639
BseGI GGATG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 56, 198, 274
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 3 cut(s) 293, 534, 579
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 2 cut(s) 510, 787
BshNI GGYRCC 1 cut(s) 759
BshTI ACCGGT 1 cut(s) 479
BshVI ATCGAT 2 cut(s) 9, 342
BsiHKAI GWGCWC 2 cut(s) 45, 493
BsiSI CCGG 3 cut(s) 147, 480, 763
BsmAI GTCTC 2 cut(s) 397, 666
BsmBI CGTCTC 1 cut(s) 666
BsnI GGCC 2 cut(s) 510, 787
Bsp1286I GDGCHC 2 cut(s) 45, 493
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 339, 463
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 510, 787
BspCNI CTCAG 3 cut(s) 57, 199, 273
BspDI ATCGAT 2 cut(s) 9, 342
BspLI GGNNCC 1 cut(s) 761
BspMAI CTGCAG 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 759
BsrDI GCAATG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 479
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 1 cut(s) 713
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 3 cut(s) 91, 166, 639
BssMI GATC 2 cut(s) 339, 463
BssNI GRCGYC 1 cut(s) 760
Bst2UI CCWGG 4 cut(s) 93, 168, 552, 694
Bst4CI ACNGT 3 cut(s) 290, 296, 498
BstACI GRCGYC 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 333, 489
BstDEI CTNAG 4 cut(s) 65, 139, 207, 260
BstEII GGTNACC 1 cut(s) 296
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 763
BstHHI GCGC 3 cut(s) 331, 762, 798
BstKTI GATC 2 cut(s) 342, 466
BstMAI GTCTC 2 cut(s) 397, 666
BstMBI GATC 2 cut(s) 339, 463
BstMWI GCNNNNNNNGC 3 cut(s) 40, 507, 793
BstNI CCWGG 4 cut(s) 93, 168, 552, 694
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 296
BstSCI CCNGG 4 cut(s) 91, 166, 550, 692
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 293, 534, 579
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 2 cut(s) 9, 342
BsuRI GGCC 2 cut(s) 510, 787
BsuTUI ATCGAT 2 cut(s) 9, 342
BtsCI GGATG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 333, 489
CfoI GCGC 3 cut(s) 331, 762, 798
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 508
ClaI ATCGAT 2 cut(s) 9, 342
Csp6I GTAC 2 cut(s) 62, 125
CspAI ACCGGT 1 cut(s) 479
CviAII CATG 4 cut(s) 128, 337, 380, 576
CviJI RGCY 9 cut(s) 103, 134, 284, 335, 510, 523, 592, 605, 787
CviKI_1 RGCY 9 cut(s) 103, 134, 284, 335, 510, 523, 592, 605, 787
CviQI GTAC 2 cut(s) 62, 125
DdeI CTNAG 4 cut(s) 65, 139, 207, 260
DinI GGCGCC 1 cut(s) 761
DpnI GATC 2 cut(s) 341, 465
DpnII GATC 2 cut(s) 339, 463
DraIII CACNNNGTG 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 679
Eam1105I GACNNNNNGTC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
EcoRII CCWGG 4 cut(s) 91, 166, 550, 692
EgeI GGCGCC 1 cut(s) 761
EheI GGCGCC 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 666
FaeI CATG 4 cut(s) 131, 340, 383, 579
FaiI YATR 9 cut(s) 129, 198, 338, 381, 413, 506, 577, 743, 774
FatI CATG 4 cut(s) 127, 336, 379, 575
Fnu4HI GCNGC 3 cut(s) 282, 548, 593
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 282, 548, 593
GlaI GCGC 3 cut(s) 330, 761, 797
GluI GCNGC 3 cut(s) 282, 548, 593
HaeII RGCGCY 1 cut(s) 763
HaeIII GGCC 2 cut(s) 510, 787
HapII CCGG 3 cut(s) 147, 480, 763
HhaI GCGC 3 cut(s) 331, 762, 798
Hin1I GRCGYC 1 cut(s) 760
Hin1II CATG 4 cut(s) 131, 340, 383, 579
Hin6I GCGC 3 cut(s) 329, 760, 796
HinP1I GCGC 3 cut(s) 329, 760, 796
HinfI GANTC 4 cut(s) 47, 143, 211, 268
HpaII CCGG 3 cut(s) 147, 480, 763
HphI GGTGA 2 cut(s) 469, 566
Hpy166II GTNNAC 2 cut(s) 43, 706
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 2 cut(s) 43, 706
HpyAV CCTTC 3 cut(s) 233, 521, 715
HpyCH4III ACNGT 3 cut(s) 290, 296, 498
HpyCH4V TGCA 5 cut(s) 43, 446, 473, 518, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 507, 793
HpyF3I CTNAG 4 cut(s) 65, 139, 207, 260
Hsp92I GRCGYC 1 cut(s) 760
Hsp92II CATG 4 cut(s) 131, 340, 383, 579
HspAI GCGC 3 cut(s) 329, 760, 796
KasI GGCGCC 1 cut(s) 759
Kzo9I GATC 2 cut(s) 339, 463
LmnI GCTCC 3 cut(s) 496, 527, 589
Lsp1109I GCAGC 3 cut(s) 293, 534, 579
MaeIII GTNAC 3 cut(s) 290, 296, 475
MalI GATC 2 cut(s) 341, 465
MboI GATC 2 cut(s) 339, 463
MboII GAAGA 2 cut(s) 331, 445
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 45, 493
MluCI AATT 4 cut(s) 116, 373, 644, 655
Mly113I GGCGCC 1 cut(s) 760
MlyI GAGTC 3 cut(s) 41, 152, 277
MmeI TCCRAC 2 cut(s) 291, 649
MnlI CCTC 5 cut(s) 48, 60, 550, 634, 798
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 3 cut(s) 147, 480, 763
MspR9I CCNGG 4 cut(s) 93, 168, 552, 694
MvaI CCWGG 4 cut(s) 93, 168, 552, 694
MwoI GCNNNNNNNGC 3 cut(s) 40, 507, 793
NarI GGCGCC 1 cut(s) 760
NdeII GATC 2 cut(s) 339, 463
NlaIII CATG 4 cut(s) 131, 340, 383, 579
NlaIV GGNNCC 1 cut(s) 761
NmeAIII GCCGAG 1 cut(s) 664
NmuCI GTSAC 2 cut(s) 290, 475
NspI RCATGY 1 cut(s) 131
PciI ACATGT 1 cut(s) 127
PfeI GAWTC 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 3 cut(s) 283, 549, 594
PleI GAGTC 3 cut(s) 41, 151, 276
PluTI GGCGCC 1 cut(s) 763
PpsI GAGTC 3 cut(s) 41, 151, 276
PscI ACATGT 1 cut(s) 127
Psp6I CCWGG 4 cut(s) 91, 166, 550, 692
PspEI GGTNACC 1 cut(s) 296
PspGI CCWGG 4 cut(s) 91, 166, 550, 692
PspN4I GGNNCC 1 cut(s) 761
PspPI GGNCC 1 cut(s) 508
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 2 cut(s) 63, 126
RsaNI GTAC 2 cut(s) 62, 125
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 3 cut(s) 282, 548, 593
Sau3AI GATC 2 cut(s) 339, 463
Sau96I GGNCC 1 cut(s) 508
ScaI AGTACT 1 cut(s) 63
SchI GAGTC 3 cut(s) 41, 152, 277
ScrFI CCNGG 4 cut(s) 93, 168, 552, 694
SduI GDGCHC 2 cut(s) 45, 493
SetI ASST 5 cut(s) 105, 172, 234, 525, 594
SfcI CTRYAG 1 cut(s) 516
SfoI GGCGCC 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 3 cut(s) 52, 104, 398
SmoI CTYRAG 3 cut(s) 52, 104, 398
Sse9I AATT 4 cut(s) 116, 373, 644, 655
SsiI CCGC 1 cut(s) 157
SspDI GGCGCC 1 cut(s) 759
StyD4I CCNGG 4 cut(s) 91, 166, 550, 692
TaaI ACNGT 3 cut(s) 290, 296, 498
TaqI TCGA 2 cut(s) 9, 342
TasI AATT 4 cut(s) 116, 373, 644, 655
TatI WGTACW 2 cut(s) 61, 124
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 2 cut(s) 290, 475
TseI GCWGC 3 cut(s) 281, 547, 592
Tsp45I GTSAC 2 cut(s) 290, 475
VneI GTGCAC 1 cut(s) 41
XapI RAATTY 1 cut(s) 644
XceI RCATGY 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.