AT1G23770

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000910
Physical Location & Seq
Reverse (-)
8405214 .. 8406266
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23770.1

Sequence Viewer

Length: 1053 bp
ATGGATACTGGATTCGCGGATTCAAATAATGATTCCAGTCCAGGCGAAGGATCCAAGAGGGGAAATTCGGGTATAGAGGGTCCAGTGCCAATGGATGTGGAGCTCGCTGCCGCTAAAAGCAAAAGGTTAAGTGAACCATTCTTTTTGAAAAATGTATTGCTTGAGAAATCTGGCGATACCAGTGACTTGACTGCTTTGGCTTTATCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTGGATCATGGCTCTGATAAGTTTAGCTTTTCAAAGAAGTTACTTTCTGTATCTCTAAGGTATACTCTGCCTGAGCTAATTACACGTAAGGATACTAATACAGTCGAGTCAGTTACTGTGAGGTTTCAGAACATAGGCCCTAGGCTTGTAGTTTACGGAACTCTAGGTGGGTCTTGTAAGCGAGTGCACATGACTTCTCTTGATAAGAGTAGGTTTTTGCCTGTTATTGATTTGGTTGTGGATACTTTGAAGTTTGAGAAGCAGGGCTCTTCTAGCTACTACCGGGAAGTGTTCATGTTGTGGAGAATGGTAAAAGATGAACTTGTTATACCGTTGTTGATTGGTCTTTGTGATAAGGCTGGCTTGGAATCTCCACCTTGTTTGATGCTCCTACCGACAGAGCTAAAGCTGAAGATACTAGAGTTGCTTCCTGGTGTGAGTATTGGATATATGGCTTGTGTTTGTACAGAGATGCGGTATCTGGCTTCAGATAATGATTTGTGGGAACATAAATGCTTGGAAGAAGGTAAGGGTTGTCTTTGGAAATTATATACAGGCGATGTTGATTGGAAGCGTAAATTTGCTTCTTTTTGGAGACGGAAACGACTCGATCTCCTAGCAAGACGAAACCCTCCCATAAAAAAGAGCAACCCTCGATTTCCTACGCTATTTCCAGACCGTAGAGACCGTAGAGAGCCTTTTGACCGTTTTGGCCCAAGTGACTTCTACCGTTTTGGACTAAGAGACCCTAGAGACCGTTTTGGCCCAAGAGACCCTAGAGATCCTCATTTCTACGGTTTCAGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH UN_NPL4

Protein Analysis

350

Amino Acids

39.95

Weight (kDa)

9.11

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 211 - 254 1.9e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 305
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 17, 111, 718
AclWI GGATC 4 cut(s) 45, 58, 255, 1019
AcsI RAATTY 2 cut(s) 64, 821
AcuI CTGAAG 2 cut(s) 674, 714
AfaI GTAC 2 cut(s) 210, 709
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 4 cut(s) 24, 148, 276, 493
AjnI CCWGG 2 cut(s) 40, 673
AluBI AGCT 6 cut(s) 103, 270, 319, 519, 646, 652
AluI AGCT 6 cut(s) 103, 270, 319, 519, 646, 652
Alw21I GWGCWC 2 cut(s) 105, 432
Alw26I GTCTC 5 cut(s) 832, 921, 981, 990, 1008
Alw44I GTGCAC 1 cut(s) 428
AlwI GGATC 4 cut(s) 45, 58, 255, 1019
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 3 cut(s) 379, 955, 1006
ApaLI GTGCAC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 64, 821
AspA2I CCTAGG 1 cut(s) 383
AspS9I GGNCC 4 cut(s) 80, 380, 956, 1007
AsuC2I CCSGG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 80
AvrII CCTAGG 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 432
BaeI ACNNNNGTAYC 2 cut(s) 650, 683
BamHI GGATCC 1 cut(s) 50
BanII GRGCYC 2 cut(s) 105, 512
BarI GAAGNNNNNNTAC 2 cut(s) 811, 843
Bbv12I GWGCWC 2 cut(s) 105, 432
BbvI GCAGC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 42, 675
BciVI GTATCC 2 cut(s) 328, 478
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 5 cut(s) 832, 921, 981, 990, 1008
BfaI CTAG 7 cut(s) 384, 407, 516, 662, 860, 993, 1020
BfuI GTATCC 2 cut(s) 328, 478
BisI GCNGC 2 cut(s) 108, 111
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 2 cut(s) 109, 112
Bme1390I CCNGG 3 cut(s) 42, 527, 675
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 4 cut(s) 80, 380, 956, 1007
BmiI GGNNCC 2 cut(s) 52, 81
BmrFI CCNGG 3 cut(s) 42, 527, 675
BmsI GCATC 2 cut(s) 618, 705
BplI GAGNNNNNCTC 2 cut(s) 880, 912
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 527
BsaAI YACGTR 1 cut(s) 329
BsaI GGTCTC 4 cut(s) 921, 981, 990, 1008
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 840, 870
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 4 cut(s) 13, 36, 83, 180
BseBI CCWGG 2 cut(s) 42, 675
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 4 cut(s) 13, 36, 83, 180
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 381, 957, 1008
BsiHKAI GWGCWC 2 cut(s) 105, 432
BsiSI CCGG 1 cut(s) 526
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 5 cut(s) 832, 921, 981, 990, 1008
BsmBI CGTCTC 1 cut(s) 832
BsnI GGCC 3 cut(s) 381, 957, 1008
Bso31I GGTCTC 4 cut(s) 921, 981, 990, 1008
Bsp1286I GDGCHC 3 cut(s) 105, 432, 512
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 4 cut(s) 50, 247, 853, 1024
BspACI CCGC 3 cut(s) 17, 111, 718
BspANI GGCC 3 cut(s) 381, 957, 1008
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 52, 81
BspPI GGATC 4 cut(s) 45, 58, 255, 1019
BspQI GCTCTTC 1 cut(s) 517
BspTNI GGTCTC 4 cut(s) 921, 981, 990, 1008
BsrGI TGTACA 1 cut(s) 707
BsrI ACTGG 4 cut(s) 13, 36, 83, 180
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 4 cut(s) 50, 247, 853, 1024
BssNAI GTATAC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 383
Bst1107I GTATAC 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 42, 675
Bst4CI ACNGT 9 cut(s) 346, 361, 576, 923, 932, 950, 974, 1001, 1040
Bst6I CTCTTC 1 cut(s) 517
BstAUI TGTACA 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 105, 604
BstDEI CTNAG 3 cut(s) 299, 315, 983
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 4 cut(s) 53, 250, 856, 1027
BstMAI GTCTC 5 cut(s) 832, 921, 981, 990, 1008
BstMBI GATC 4 cut(s) 50, 247, 853, 1024
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstNI CCWGG 2 cut(s) 42, 675
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 3 cut(s) 40, 525, 673
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 50, 1024
BstYI RGATCY 2 cut(s) 50, 1024
BstZ17I GTATAC 1 cut(s) 306
BsuI GTATCC 2 cut(s) 328, 478
BsuRI GGCC 3 cut(s) 381, 957, 1008
BtgZI GCGATG 1 cut(s) 816
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 90, 187
Cac8I GCNNGC 2 cut(s) 105, 604
CaiI CAGNNNCTG 1 cut(s) 359
Cfr13I GGNCC 4 cut(s) 80, 380, 956, 1007
Csp6I GTAC 2 cut(s) 209, 708
CspCI CAANNNNNGTGG 4 cut(s) 78, 113, 606, 641
CviAII CATG 4 cut(s) 212, 251, 433, 538
CviQI GTAC 2 cut(s) 209, 708
DdeI CTNAG 3 cut(s) 299, 315, 983
DpnI GATC 4 cut(s) 52, 249, 855, 1026
DpnII GATC 4 cut(s) 50, 247, 853, 1024
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 383
Eco24I GRGCYC 2 cut(s) 105, 512
Eco31I GGTCTC 4 cut(s) 921, 981, 990, 1008
Eco47I GGWCC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 674, 714
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 40, 673
EcoT14I CCWWGG 1 cut(s) 383
EcoT38I GRGCYC 2 cut(s) 105, 512
ErhI CCWWGG 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 832
FaeI CATG 4 cut(s) 215, 254, 436, 541
FalI AAGNNNNNCTT 6 cut(s) 254, 286, 549, 581, 590, 622
FatI CATG 4 cut(s) 211, 250, 432, 537
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 2 cut(s) 108, 111
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 2 cut(s) 105, 512
Fsp4HI GCNGC 2 cut(s) 108, 111
FspBI CTAG 7 cut(s) 384, 407, 516, 662, 860, 993, 1020
GluI GCNGC 2 cut(s) 108, 111
HaeIII GGCC 3 cut(s) 381, 957, 1008
HapII CCGG 1 cut(s) 526
Hin1II CATG 4 cut(s) 215, 254, 436, 541
HinfI GANTC 8 cut(s) 12, 20, 32, 227, 234, 350, 611, 849
HpaII CCGG 1 cut(s) 526
Hpy166II GTNNAC 4 cut(s) 134, 306, 397, 430
Hpy188I TCNGA 4 cut(s) 259, 372, 733, 1046
Hpy188III TCNNGA 3 cut(s) 231, 443, 917
Hpy8I GTNNAC 4 cut(s) 134, 306, 397, 430
HpyAV CCTTC 2 cut(s) 41, 761
HpyCH4III ACNGT 9 cut(s) 346, 361, 576, 923, 932, 950, 974, 1001, 1040
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
HpyF3I CTNAG 3 cut(s) 299, 315, 983
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 4 cut(s) 215, 254, 436, 541
Kzo9I GATC 4 cut(s) 50, 247, 853, 1024
LguI GCTCTTC 1 cut(s) 517
LmnI GCTCC 2 cut(s) 100, 636
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 618, 705
MaeI CTAG 7 cut(s) 384, 407, 516, 662, 860, 993, 1020
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 4 cut(s) 182, 282, 355, 962
MalI GATC 4 cut(s) 52, 249, 855, 1026
MboI GATC 4 cut(s) 50, 247, 853, 1024
MboII GAAGA 3 cut(s) 504, 667, 776
MflI RGATCY 2 cut(s) 50, 1024
MhlI GDGCHC 3 cut(s) 105, 432, 512
MluCI AATT 4 cut(s) 64, 321, 788, 821
MlyI GAGTC 2 cut(s) 359, 843
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 51, 70, 357, 885, 906, 1038
MseI TTAA 1 cut(s) 128
MspI CCGG 1 cut(s) 526
MspR9I CCNGG 3 cut(s) 42, 527, 675
MvaI CCWGG 2 cut(s) 42, 675
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 516
NciI CCSGG 1 cut(s) 527
NdeII GATC 4 cut(s) 50, 247, 853, 1024
NlaIII CATG 4 cut(s) 215, 254, 436, 541
NlaIV GGNNCC 2 cut(s) 52, 81
NmuCI GTSAC 2 cut(s) 182, 962
NspI RCATGY 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 517
PfeI GAWTC 6 cut(s) 12, 20, 32, 227, 234, 611
PkrI GCNGC 2 cut(s) 109, 112
PleI GAGTC 2 cut(s) 358, 843
PpsI GAGTC 2 cut(s) 358, 843
Ppu21I YACGTR 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 40, 673
PspGI CCWGG 2 cut(s) 40, 673
PspN4I GGNNCC 2 cut(s) 52, 81
PspPI GGNCC 4 cut(s) 80, 380, 956, 1007
PsrI GAACNNNNNNTAC 2 cut(s) 555, 587
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 2 cut(s) 50, 1024
RsaI GTAC 2 cut(s) 210, 709
RsaNI GTAC 2 cut(s) 209, 708
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 517
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 108, 111
Sau3AI GATC 4 cut(s) 50, 247, 853, 1024
Sau96I GGNCC 4 cut(s) 80, 380, 956, 1007
SchI GAGTC 2 cut(s) 359, 843
ScrFI CCNGG 3 cut(s) 42, 527, 675
SduI GDGCHC 3 cut(s) 105, 432, 512
SfaNI GCATC 2 cut(s) 618, 705
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 4 cut(s) 64, 321, 788, 821
SsiI CCGC 3 cut(s) 17, 111, 718
SspMI CTAG 7 cut(s) 384, 407, 516, 662, 860, 993, 1020
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 40, 525, 673
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 9 cut(s) 346, 361, 576, 923, 932, 950, 974, 1001, 1040
TaiI ACGT 1 cut(s) 331
TaqI TCGA 3 cut(s) 348, 852, 898
TasI AATT 4 cut(s) 64, 321, 788, 821
TatI WGTACW 2 cut(s) 208, 707
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 6 cut(s) 12, 20, 32, 227, 234, 611
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 2 cut(s) 90, 187
TseFI GTSAC 2 cut(s) 182, 962
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 2 cut(s) 182, 962
TspDTI ATGAA 2 cut(s) 526, 576
TspGWI ACGGA 2 cut(s) 414, 856
TspRI CASTG 2 cut(s) 90, 187
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 2 cut(s) 64, 821
XceI RCATGY 1 cut(s) 215
XmaJI CCTAGG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 7 cut(s) 384, 407, 516, 662, 860, 993, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.