RchiOBHm_Chr4g0407391

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000910
Physical Location & Seq
Reverse (-)
29613113 .. 29614129
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37862

Sequence Viewer

Length: 1017 bp
ATGGGTGAAGAAGACGAAGAGAGGGCTTGTGATCCTTTGAAAGACGACAAGTACAAGTACTCCCCATCTTTATTGTTGAGGAGGGTACTCACAGAGGAGTTGACCGCCCAAGACCTTCACAGAAACCACAAAAACAACAAGCTTCTCGTCGCTGCGGTGCATGCTGTGCTCTTAGACTCCGGTTTCGTTCGCTTTAGTTCGGGTACGTCAGTACATGATGCCCTGTTAGAGTTAGGTTTCACCGAGTTCGGTTCGGTATCGGGTATGTCACATTCCTACACTTTGCCTGAGATTCTTATCGAACAAGATAATTGTGATTGTAGTAGTAATCGGAAGATGGAAGGAATTGTTTTGAAGTTTGAGAATTCAGGTAACTTTTCGTCTGACCAGAAAAGAACAAAACATGTGGCTCCTCGCATGGTGAAAGTTAGTGGGTCCTTGATTAATTCTGGTTCTAGGTTTGGGCAGAAGCACAAGAAGGTATGTTTGGAATTGGATGAGAATAAGTTTGCGCCGGCGATTGAGTTTTTTTGGGGAAATAATACGAGGAATACTGTGAATGATTTGGGATTTCGTGAGAGACAAGTTTGTGAGTTTTGGAAAATTGTCAAGGATGAGATTTCACTTCCATTGCTGATTGATCTTTGCACAGAGGCCGGTTTGCCTGCTCCATTGTGCCTTATGAGCCTTCCTCAGGAGCTCAAAATGAAGATTTTGGTAGCAATGCCGAGTGCTGATCTTGCCAGAGTAGGGGGTGTTTGTAAGGAGCTGCGAGATCTTGCAAATGACAATGAGTTGTGGAAGCACAAGTTAGCCCAGGAGTTTGCTGAGGAGTTTTCTGGTACAAGAGAAGTAGAAGAACTCTGGAAAGTTACTTTTCGTCGACAATGGGAGACTAAAAGGGAGCAAGCAAAGAAACTAGTGGGAAAAAAGAGAGGACGTGAGAACGTTTATTGTTTCCATTGGCAACCACGTTCTAAATATCCTAAATGGAGTCACGAACCATATTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like HLH UN_NPL4

Protein Analysis

338

Amino Acids

38.84

Weight (kDa)

7.59

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 229 - 269 5.9e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 883
AciI CCGC 2 cut(s) 105, 155
AclI AACGTT 1 cut(s) 948
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 364
AfaI GTAC 6 cut(s) 53, 59, 87, 205, 213, 844
AfiI CCNNNNNNNGG 2 cut(s) 694, 750
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 40, 355
AhlI ACTAGT 1 cut(s) 919
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 1 cut(s) 816
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 3 cut(s) 142, 700, 769
AluI AGCT 3 cut(s) 142, 700, 769
Alw21I GWGCWC 2 cut(s) 171, 702
Alw26I GTCTC 2 cut(s) 574, 887
AlwI GGATC 1 cut(s) 26
AoxI GGCC 1 cut(s) 654
ApeKI GCWGC 2 cut(s) 152, 769
ApoI RAATTY 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 17, 232, 433
AvaII GGWCC 1 cut(s) 435
AxyI CCTNAGG 1 cut(s) 693
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 171, 702
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 2 cut(s) 139, 756
BccI CCATC 2 cut(s) 73, 331
BciT130I CCWGG 1 cut(s) 818
BcoDI GTCTC 2 cut(s) 574, 887
BcuI ACTAGT 1 cut(s) 919
BfaI CTAG 2 cut(s) 456, 920
BglII AGATCT 1 cut(s) 775
BisI GCNGC 2 cut(s) 153, 770
BlsI GCNGC 2 cut(s) 154, 771
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 818
Bme18I GGWCC 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 411, 436
BmrFI CCNGG 1 cut(s) 818
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 676, 708
Bpu10I CCTNAGC 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 816
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 750
Bse118I RCCGGY 2 cut(s) 514, 656
Bse21I CCTNAGG 1 cut(s) 693
Bse3DI GCAATG 2 cut(s) 629, 729
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 818
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 2 cut(s) 502, 619
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 2 cut(s) 694, 750
BseMI GCAATG 2 cut(s) 629, 729
BseMII CTCAG 3 cut(s) 279, 707, 819
BseRI GAGGAG 4 cut(s) 94, 110, 402, 845
BseXI GCAGC 2 cut(s) 139, 756
BshFI GGCC 1 cut(s) 656
BsiHKAI GWGCWC 2 cut(s) 171, 702
BsiSI CCGG 3 cut(s) 180, 515, 657
BslI CCNNNNNNNGG 2 cut(s) 694, 750
BsmAI GTCTC 2 cut(s) 574, 887
BsnI GGCC 1 cut(s) 656
Bsp1286I GDGCHC 2 cut(s) 171, 702
Bsp143I GATC 4 cut(s) 31, 640, 736, 775
BspACI CCGC 2 cut(s) 105, 155
BspANI GGCC 1 cut(s) 656
BspCNI CTCAG 3 cut(s) 280, 706, 820
BspLI GGNNCC 2 cut(s) 411, 436
BspPI GGATC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 629, 729
BsrFI RCCGGY 2 cut(s) 514, 656
BssAI RCCGGY 2 cut(s) 514, 656
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 4 cut(s) 31, 640, 736, 775
Bst2UI CCWGG 1 cut(s) 818
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 4 cut(s) 162, 516, 666, 909
BstDEI CTNAG 4 cut(s) 172, 288, 693, 828
BstENI CCTNNNNNAGG 1 cut(s) 692
BstF5I GGATG 2 cut(s) 502, 619
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 4 cut(s) 34, 643, 739, 778
BstMAI GTCTC 2 cut(s) 574, 887
BstMBI GATC 4 cut(s) 31, 640, 736, 775
BstMWI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
BstNI CCWGG 1 cut(s) 818
BstNSI RCATGY 2 cut(s) 164, 407
BstSCI CCNGG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 139, 756
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
Bsu36I CCTNAGG 1 cut(s) 693
BsuRI GGCC 1 cut(s) 656
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 2 cut(s) 502, 619
Cac8I GCNNGC 4 cut(s) 162, 516, 666, 909
CfoI GCGC 1 cut(s) 514
Cfr10I RCCGGY 2 cut(s) 514, 656
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 6 cut(s) 52, 58, 86, 204, 212, 843
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 4 cut(s) 161, 215, 404, 418
CviJI RGCY 8 cut(s) 26, 142, 410, 656, 687, 700, 769, 815
CviKI_1 RGCY 8 cut(s) 26, 142, 410, 656, 687, 700, 769, 815
CviQI GTAC 6 cut(s) 52, 58, 86, 204, 212, 843
DdeI CTNAG 4 cut(s) 172, 288, 693, 828
DpnI GATC 4 cut(s) 33, 642, 738, 777
DpnII GATC 4 cut(s) 31, 640, 736, 775
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 700
Eco81I CCTNAGG 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 700
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 702
FaeI CATG 4 cut(s) 164, 218, 407, 421
FaiI YATR 8 cut(s) 162, 216, 266, 405, 419, 484, 683, 1006
FatI CATG 4 cut(s) 160, 214, 403, 417
FblI GTMKAC 1 cut(s) 883
Fnu4HI GCNGC 2 cut(s) 153, 770
FokI GGATG 2 cut(s) 509, 626
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 2 cut(s) 153, 770
FspBI CTAG 2 cut(s) 456, 920
GlaI GCGC 1 cut(s) 513
GluI GCNGC 2 cut(s) 153, 770
HaeIII GGCC 1 cut(s) 656
HapII CCGG 3 cut(s) 180, 515, 657
HhaI GCGC 1 cut(s) 514
Hin1II CATG 4 cut(s) 164, 218, 407, 421
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 2 cut(s) 102, 884
HindII GTYRAC 2 cut(s) 102, 884
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 176, 292, 994
HpaII CCGG 3 cut(s) 180, 515, 657
HphI GGTGA 3 cut(s) 17, 232, 433
Hpy166II GTNNAC 2 cut(s) 102, 884
Hpy188I TCNGA 2 cut(s) 333, 385
Hpy188III TCNNGA 4 cut(s) 575, 695, 865, 998
Hpy8I GTNNAC 2 cut(s) 102, 884
Hpy99I CGWCG 2 cut(s) 152, 885
HpyAV CCTTC 4 cut(s) 125, 335, 472, 698
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 4 cut(s) 206, 940, 948, 973
HpyCH4V TGCA 3 cut(s) 160, 648, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
HpyF3I CTNAG 4 cut(s) 172, 288, 693, 828
HpySE526I ACGT 4 cut(s) 206, 940, 948, 973
Hsp92II CATG 4 cut(s) 164, 218, 407, 421
HspAI GCGC 1 cut(s) 512
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Kzo9I GATC 4 cut(s) 31, 640, 736, 775
LmnI GCTCC 5 cut(s) 415, 673, 697, 766, 904
Lsp1109I GCAGC 2 cut(s) 139, 756
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 456, 920
MaeII ACGT 4 cut(s) 206, 940, 948, 973
MaeIII GTNAC 4 cut(s) 267, 371, 871, 995
MalI GATC 4 cut(s) 33, 642, 738, 777
MboI GATC 4 cut(s) 31, 640, 736, 775
MboII GAAGA 6 cut(s) 20, 23, 29, 346, 721, 869
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 171, 702
MluCI AATT 6 cut(s) 310, 345, 364, 445, 491, 603
MlyI GAGTC 2 cut(s) 170, 1003
MreI CGCCGGCG 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 1 cut(s) 444
MspI CCGG 3 cut(s) 180, 515, 657
MspR9I CCNGG 1 cut(s) 818
MvaI CCWGG 1 cut(s) 818
MwoI GCNNNNNNNGC 4 cut(s) 161, 166, 684, 740
NaeI GCCGGC 1 cut(s) 516
NdeII GATC 4 cut(s) 31, 640, 736, 775
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 4 cut(s) 164, 218, 407, 421
NlaIV GGNNCC 2 cut(s) 411, 436
NmeAIII GCCGAG 1 cut(s) 753
NmuCI GTSAC 2 cut(s) 267, 995
NspI RCATGY 2 cut(s) 164, 407
PaeI GCATGC 1 cut(s) 164
PciI ACATGT 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 154, 771
PleI GAGTC 2 cut(s) 170, 1002
PpsI GAGTC 2 cut(s) 170, 1002
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 702
Psp1406I AACGTT 1 cut(s) 948
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 816
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 2 cut(s) 411, 436
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 6 cut(s) 53, 59, 87, 205, 213, 844
RsaNI GTAC 6 cut(s) 52, 58, 86, 204, 212, 843
SacI GAGCTC 1 cut(s) 702
SalI GTCGAC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 2 cut(s) 153, 770
Sau3AI GATC 4 cut(s) 31, 640, 736, 775
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 59
SchI GAGTC 2 cut(s) 170, 1003
ScrFI CCNGG 1 cut(s) 818
SduI GDGCHC 2 cut(s) 171, 702
SfaNI GCATC 1 cut(s) 208
SgrAI CRCCGGYG 1 cut(s) 514
SinI GGWCC 1 cut(s) 435
SpeI ACTAGT 1 cut(s) 919
SphI GCATGC 1 cut(s) 164
Sse9I AATT 6 cut(s) 310, 345, 364, 445, 491, 603
SsiI CCGC 2 cut(s) 105, 155
SspMI CTAG 2 cut(s) 456, 920
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 816
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 4 cut(s) 209, 943, 951, 976
TaqI TCGA 2 cut(s) 300, 883
TasI AATT 6 cut(s) 310, 345, 364, 445, 491, 603
TatI WGTACW 3 cut(s) 51, 57, 211
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 2 cut(s) 267, 995
TseI GCWGC 2 cut(s) 152, 769
Tsp45I GTSAC 2 cut(s) 267, 995
TspDTI ATGAA 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 435
VspI ATTAAT 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 692
XapI RAATTY 1 cut(s) 364
XceI RCATGY 2 cut(s) 164, 407
XmiI GTMKAC 1 cut(s) 883
XspI CTAG 2 cut(s) 456, 920
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.