Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006069

Physical Location & Seq

Genomic Coordinates Reverse (-)

31427550 .. 31428240

Gene Structure 691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCATACGGCAAAGCCGAAATCGAAAGGTTGTATGAGCACCGAAAAACAGAGGAACCTTGGCGGTCGGCAGCCCTTAGGCATGGAGATGATCACGGAGCGATCCCTAGCGGTGATGGAGAGTGCATCGGAAGGCCATATTCGTCATCCGCCTTCGAGCAAGTGGAGACGGCGCCCATGGTGGACGCACGCCTAGTTGCCTCGGCGTTACTAGCTACCGAAGAAGACTCGGCATCACCGCGTTTTTGCGGCGGGCCGGAGAGCGTTCGCCAAAAGCAAACTGAACCGGATCCAAGCGCAGGTGGTTGGATTAATGATGCTTACGGATGTAAGAAGGCTACTCTTCTTGCGGACGTTGTATTTACTCTTGGGGCAATTGTCATGGCTGCTGCCCCCGATCCATATGTTCTTATTTTAGGACGACTTCTAGTTGGCCTTGGGGTTGGTGTAGCTTCTGTTACTGCTCCCGTCTATATTGCGAAGCATTCCCTTCGGAAATTAGGGGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

170

Amino Acids

18.08

Weight (kDa)

5.23

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	101 - 163	2.2e-14	Sugar (and other) transporter
MFS_1	PF07690	101 - 162	1.7e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43330
fragaria_vesca	FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240
malus_domestica	MD04G1039400.v1.1
prunus_persica	Prupe.1G189900_v2.0.a1 Prupe.1G189900_v2.0.a1
pyrus_communis	pycom04g03190
rosa_chinensis	RchiOBHm_Chr0c40g0503371 RchiOBHm_Chr0c40g0503381 RchiOBHm_Chr4g0407331
rosa_laevigata	RLG00000008733
rosa_multiflora	Rmu_sc0006262.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107480 Rroxscaffold_5G00351870 Rroxscaffold_7G00213980
rosa_rugosa	Rorug04G0078700 Rorug04G0078800
rosa_samantha	Rh4AG143400 Rh4BG141100 Rh4CG149800 Rh4DG137400
rosa_wichuraiana	Rw4G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	172
AccII	CGCG	1 cut(s)	241
AciI	CCGC	7 cut(s)	64, 111, 150, 239, 249, 252, 350
AclWI	GGATC	4 cut(s)	97, 284, 297, 392
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	299
AluBI	AGCT	2 cut(s)	215, 452
AluI	AGCT	2 cut(s)	215, 452
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	4 cut(s)	97, 284, 297, 392
AoxI	GGCC	3 cut(s)	134, 254, 433
ApeKI	GCWGC	3 cut(s)	71, 386, 389
AseI	ATTAAT	1 cut(s)	312
AspLEI	GCGC	2 cut(s)	175, 299
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	125, 228
AxyI	CCTNAGG	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	83, 373, 376
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	25, 186
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	5 cut(s)	108, 194, 212, 428, 511
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	4 cut(s)	72, 250, 387, 390
BlsI	GCNGC	4 cut(s)	73, 251, 388, 391
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	57, 174, 291
BmsI	GCATC	3 cut(s)	135, 242, 307
BpiI	GAAGAC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	59, 177, 201, 436
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse21I	CCTNAGG	1 cut(s)	77
BseDI	CCNNGG	4 cut(s)	59, 177, 201, 436
BseGI	GGATG	2 cut(s)	146, 332
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	83, 373, 376
Bsh1236I	CGCG	1 cut(s)	241
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	3 cut(s)	136, 256, 435
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	257, 287
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	136, 256, 435
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	91, 102, 289, 397
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	7 cut(s)	64, 111, 150, 239, 249, 252, 350
BspANI	GGCC	3 cut(s)	136, 256, 435
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	57, 174, 291
BspMI	ACCTGC	1 cut(s)	290
BspPI	GGATC	4 cut(s)	97, 284, 297, 392
BspT107I	GGYRCC	1 cut(s)	172
BssECI	CCNNGG	4 cut(s)	59, 177, 201, 436
BssMI	GATC	4 cut(s)	91, 102, 289, 397
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	3 cut(s)	59, 177, 436
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	190, 254
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	146, 332
BstFNI	CGCG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	175, 299
BstKTI	GATC	4 cut(s)	94, 105, 292, 400
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	91, 102, 289, 397
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	83, 373, 376
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	136, 256, 435
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	146, 332
BveI	ACCTGC	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	190, 254
CfoI	GCGC	2 cut(s)	175, 299
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	194
CviAII	CATG	3 cut(s)	83, 178, 382
CviJI	RGCY	9 cut(s)	17, 74, 136, 215, 256, 338, 386, 435, 452
CviKI_1	RGCY	9 cut(s)	17, 74, 136, 215, 256, 338, 386, 435, 452
DdeI	CTNAG	1 cut(s)	77
DinI	GGCGCC	1 cut(s)	174
DpnI	GATC	4 cut(s)	93, 104, 291, 399
DpnII	GATC	4 cut(s)	91, 102, 289, 397
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	3 cut(s)	59, 177, 436
Eco81I	CCTNAGG	1 cut(s)	77
EcoT14I	CCWWGG	3 cut(s)	59, 177, 436
EgeI	GGCGCC	1 cut(s)	174
EheI	GGCGCC	1 cut(s)	174
ErhI	CCWWGG	3 cut(s)	59, 177, 436
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	3 cut(s)	86, 181, 385
FaiI	YATR	9 cut(s)	7, 36, 84, 139, 179, 383, 403, 405, 474
FatI	CATG	3 cut(s)	82, 177, 381
FauI	CCCGC	1 cut(s)	245
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	72, 250, 387, 390
FokI	GGATG	2 cut(s)	133, 339
Fsp4HI	GCNGC	4 cut(s)	72, 250, 387, 390
FspBI	CTAG	5 cut(s)	108, 194, 212, 428, 511
GlaI	GCGC	2 cut(s)	174, 298
GluI	GCNGC	4 cut(s)	72, 250, 387, 390
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	136, 256, 435
HapII	CCGG	2 cut(s)	257, 287
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	175, 299
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	86, 181, 385
Hin6I	GCGC	2 cut(s)	173, 297
HinP1I	GCGC	2 cut(s)	173, 297
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	2 cut(s)	257, 287
HphI	GGTGA	2 cut(s)	125, 228
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	131, 495
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	4 cut(s)	126, 163, 328, 500
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	86, 181, 385
HspAI	GCGC	2 cut(s)	173, 297
KasI	GGCGCC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	91, 102, 289, 397
LmnI	GCTCC	2 cut(s)	98, 469
LpnPI	CCDG	3 cut(s)	270, 285, 300
Lsp1109I	GCAGC	3 cut(s)	83, 373, 376
LweI	GCATC	3 cut(s)	135, 242, 307
MaeI	CTAG	5 cut(s)	108, 194, 212, 428, 511
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	207, 457
MalI	GATC	4 cut(s)	93, 104, 291, 399
MboI	GATC	4 cut(s)	91, 102, 289, 397
MboII	GAAGA	3 cut(s)	233, 236, 335
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	2 cut(s)	375, 497
Mly113I	GGCGCC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	46, 211, 499
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	2 cut(s)	257, 287
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	212
NarI	GGCGCC	1 cut(s)	173
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	4 cut(s)	91, 102, 289, 397
NlaIII	CATG	3 cut(s)	86, 181, 385
NlaIV	GGNNCC	3 cut(s)	57, 174, 291
NmeAIII	GCCGAG	2 cut(s)	182, 209
PaqCI	CACCTGC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	73, 251, 388, 391
PleI	GAGTC	1 cut(s)	221
PluTI	GGCGCC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	221
PshBI	ATTAAT	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	57, 174, 291
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	4 cut(s)	72, 250, 387, 390
Sau3AI	GATC	4 cut(s)	91, 102, 289, 397
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	32, 61, 217, 304, 357, 454
SfaNI	GCATC	3 cut(s)	135, 242, 307
SfoI	GGCGCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	375, 497
SsiI	CCGC	7 cut(s)	64, 111, 150, 239, 249, 252, 350
SspDI	GGCGCC	1 cut(s)	172
SspMI	CTAG	5 cut(s)	108, 194, 212, 428, 511
StyI	CCWWGG	3 cut(s)	59, 177, 436
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	24, 156
TasI	AATT	2 cut(s)	375, 497
TauI	GCSGC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	3 cut(s)	71, 386, 389
TspGWI	ACGGA	2 cut(s)	111, 339
VspI	ATTAAT	1 cut(s)	312
XspI	CTAG	5 cut(s)	108, 194, 212, 428, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.