Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006069

Physical Location & Seq

Genomic Coordinates Reverse (-)

64471244 .. 64471646

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTTCTATTTCGGGAATTCTTATATTCTCGGTTTGATTGTCGTTGCCGGGATTGGTGGACTCCTCTTTGGCTACGACACGGGTGTTATATCGGGTGCTCTTCTCCTGCGAGGTGGTTGGATTAATGATGCTTACGGACGTAAGAAGGTTACTCTTCTTGCTGATGTTGTATTTGCTCATGGGGCAATTGTCATGGCTGCTGCCCCCGATCCATATGTTCTTATTTTAGGACGACTTCTAGTTGGCCTTGGGGTTGGTGTCACTTCATTCGCTCCCGTCTATATTGCGAAGCATCCCTTCGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

102

Amino Acids

10.64

Weight (kDa)

9.1

Isoelectric Point (pI)

14.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	25 - 94	8.4e-06	Major Facilitator Superfamily
Sugar_tr	PF00083	38 - 96	2.7e-12	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43330
fragaria_vesca	FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240
malus_domestica	MD04G1039400.v1.1
prunus_persica	Prupe.1G189900_v2.0.a1 Prupe.1G189900_v2.0.a1
pyrus_communis	pycom04g03190
rosa_chinensis	RchiOBHm_Chr0c40g0503371 RchiOBHm_Chr0c40g0503381 RchiOBHm_Chr4g0407331
rosa_laevigata	RLG00000008733
rosa_multiflora	Rmu_sc0006262.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107480 Rroxscaffold_5G00351870 Rroxscaffold_7G00213980
rosa_rugosa	Rorug04G0078700 Rorug04G0078800
rosa_samantha	Rh4AG143400 Rh4BG141100 Rh4CG149800 Rh4DG137400
rosa_wichuraiana	Rw4G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	16
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	197, 200
ApoI	RAATTY	1 cut(s)	16
AseI	ATTAAT	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	184, 187
BcnI	CCSGG	1 cut(s)	49
BfaI	CTAG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	198, 201
BlsI	GCNGC	2 cut(s)	199, 202
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	118, 301
BpuMI	CCSGG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	184, 187
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	105, 159
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	184, 187
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	292
CviAII	CATG	2 cut(s)	179, 193
CviJI	RGCY	3 cut(s)	72, 197, 246
CviKI_1	RGCY	3 cut(s)	72, 197, 246
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	105, 159
EarI	CTCTTC	2 cut(s)	105, 159
Eco130I	CCWWGG	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	182, 196
FaiI	YATR	7 cut(s)	24, 89, 180, 194, 214, 216, 282
FalI	AAGNNNNNCTT	1 cut(s)	281
FatI	CATG	2 cut(s)	178, 192
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	198, 201
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	198, 201
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	2 cut(s)	198, 201
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	182, 196
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	139, 307
HpyCH4IV	ACGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	182, 196
Kzo9I	GATC	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	2 cut(s)	61, 119
Lsp1109I	GCAGC	2 cut(s)	184, 187
LweI	GCATC	2 cut(s)	118, 301
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	148, 259
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	92, 146
MfeI	CAATTG	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	3 cut(s)	16, 186, 304
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	74, 104
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
MunI	CAATTG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	49
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	182, 196
NmuCI	GTSAC	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	199, 202
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	198, 201
Sau3AI	GATC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	3 cut(s)	115, 142, 150
SfaNI	GCATC	2 cut(s)	118, 301
Sse9I	AATT	3 cut(s)	16, 186, 304
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	247
TaiI	ACGT	1 cut(s)	142
TasI	AATT	3 cut(s)	16, 186, 304
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	197, 200
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	123
XapI	RAATTY	1 cut(s)	16
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.