Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0006069

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATTACCGGCGGCCAGTTTCTTTCCTACCTTGTAAATCTTGGTTTTACAGAGGTCCTCATAGAGGAGAGGTATGGCTACCAATTGACTGTTGCCTGTGCAGGTCCAGGGACATGGCGATGGATGCTTGGAGTATCAGGTATTCCTGCTGTCATTCAGTTTTCTCTCATGCTCTGTCTGCCAGAGTCTCCGCGATGGCTTTTTATGAAGTGTGAAAACTTTGTGATTTTCCCTTGTCCTTCTCCTATCTATATTTATTTGCAGGATGATAAAGAGAAAGCCATTTCTGTGCTCTCCAAAATTTATGAAGTGTCTCGCTTAGATGATGAAATTGAGTACCTTTCTTCTCAAGCAGAGGAAGAGCGCCATAAGAAGGATGATGTTAGCTACTGGCAAGTTTTCAGATCAAAAGAAATCAGACTTGCCTTTATTGTTGGTGCAGGACTTCAGGCATTTCAGCAATTCACTGGTATCAATACGGTTATGTACTACAGCCCAACGATTGTCCAGATGGCTGGCTTCCAATCCAACCAGTTAGCTATCTTGCTGTCCCTTATTGTAGCTGCCATGAATGCCGCTGGGACGGTTCTTGGTATTTACCTCATTGACAAGTGTGGGAGAAGGAAGCTGGTCCTATCGAGCCTATTCGGTGTTATTATATCACTTGTCATCCTCTCGGCTGCATTTTTCTTTGAATCATCTGATTCTTCAAGTGGAATCTATGGGTGGATTGCTGTTTTAGGTTTAGCCCTGTACATTGCTTTCTTTGCACCAGGGATGGGACCTGTGCCATGGACAGTGAACTCTGAGATTTATCCTGAAGCATACAGAGGTATGTGCGGGGGCATGTCAGCTACTGTGAATTGGGTGTCAAATTTCATCGTGGCCCAGAGTTTCCTGTCTGTAGCTGAAGCCGCAGGAACCGGTGCAACCTTCCTGATCCTTGCGGTTGTGGCTGTTATCGCATTTATTTTTGTGCTTGTGTTACTGCCGGAGACAAAAGGGTTGACATTTGAGGAAGTGGAGAGGATTTGGAAGAAAAGGGCTTGGGGCAGTGATTCTAACTCGGAGAGCCTTCTTGAGCAGGCAAGTGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005365 GO:0005366 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901618 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

366

Amino Acids

40.44

Weight (kDa)

4.85

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43330
fragaria_vesca	FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240 FvH4_4g11240
malus_domestica	MD04G1039400.v1.1
prunus_persica	Prupe.1G189900_v2.0.a1 Prupe.1G189900_v2.0.a1
pyrus_communis	pycom04g03190
rosa_chinensis	RchiOBHm_Chr0c40g0503371 RchiOBHm_Chr0c40g0503381 RchiOBHm_Chr4g0407331
rosa_laevigata	RLG00000008733
rosa_multiflora	Rmu_sc0006262.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107480 Rroxscaffold_5G00351870 Rroxscaffold_7G00213980
rosa_rugosa	Rorug04G0078700 Rorug04G0078800
rosa_samantha	Rh4AG143400 Rh4BG141100 Rh4CG149800 Rh4DG137400
rosa_wichuraiana	Rw4G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AccII	CGCG	1 cut(s)	193
AciI	CCGC	6 cut(s)	12, 191, 576, 840, 915, 947
AclWI	GGATC	1 cut(s)	934
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	300, 874
AcuI	CTGAAG	3 cut(s)	431, 840, 930
AfaI	GTAC	3 cut(s)	338, 488, 755
AfiI	CCNNNNNNNGG	3 cut(s)	64, 373, 779
AgeI	ACCGGT	1 cut(s)	923
AgsI	TTSAA	2 cut(s)	695, 711
AjnI	CCWGG	2 cut(s)	106, 772
AluBI	AGCT	6 cut(s)	387, 539, 563, 628, 854, 908
AluI	AGCT	6 cut(s)	387, 539, 563, 628, 854, 908
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	3 cut(s)	192, 318, 989
AlwI	GGATC	1 cut(s)	934
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	2 cut(s)	13, 885
ApeKI	GCWGC	2 cut(s)	563, 680
ApoI	RAATTY	2 cut(s)	300, 874
AsiGI	ACCGGT	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
AvaII	GGWCC	4 cut(s)	55, 104, 631, 782
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	550, 667
BccI	CCATC	4 cut(s)	114, 189, 505, 772
BciT130I	CCWGG	2 cut(s)	108, 774
BcoDI	GTCTC	3 cut(s)	192, 318, 989
BfmI	CTRYAG	2 cut(s)	490, 903
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
BlsI	GCNGC	5 cut(s)	14, 565, 577, 682, 916
Bme1390I	CCNGG	2 cut(s)	108, 774
Bme18I	GGWCC	4 cut(s)	55, 104, 631, 782
BmgT120I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
BmiI	GGNNCC	2 cut(s)	783, 922
BmrFI	CCNGG	2 cut(s)	108, 774
BmsI	GCATC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	333, 1100
BsaJI	CCNNGG	3 cut(s)	107, 773, 791
BsaWI	WCCGGW	1 cut(s)	923
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 373, 779
Bse118I	RCCGGY	2 cut(s)	8, 923
Bse1I	ACTGG	4 cut(s)	16, 395, 472, 532
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	2 cut(s)	108, 774
BseDI	CCNNGG	3 cut(s)	107, 773, 791
BseGI	GGATG	5 cut(s)	129, 271, 382, 669, 783
BseLI	CCNNNNNNNGG	3 cut(s)	64, 373, 779
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	4 cut(s)	16, 395, 472, 532
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	550, 667
BseYI	CCCAGC	1 cut(s)	578
BsgI	GTGCAG	2 cut(s)	120, 459
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	15, 887
BshTI	ACCGGT	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	3 cut(s)	9, 924, 992
BslFI	GGGAC	4 cut(s)	124, 535, 595, 795
BslI	CCNNNNNNNGG	3 cut(s)	64, 373, 779
BsmAI	GTCTC	3 cut(s)	192, 318, 989
BsmFI	GGGAC	4 cut(s)	124, 535, 595, 795
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	15, 887
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	404, 939
Bsp19I	CCATGG	1 cut(s)	791
BspACI	CCGC	6 cut(s)	12, 191, 576, 840, 915, 947
BspANI	GGCC	2 cut(s)	15, 887
BspCNI	CTCAG	1 cut(s)	799
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	783, 922
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	934
BspQI	GCTCTTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	2 cut(s)	8, 923
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	4 cut(s)	16, 395, 472, 532
BssAI	RCCGGY	2 cut(s)	8, 923
BssECI	CCNNGG	3 cut(s)	107, 773, 791
BssMI	GATC	2 cut(s)	404, 939
BssT1I	CCWWGG	1 cut(s)	791
Bst2UI	CCWGG	2 cut(s)	108, 774
Bst4CI	ACNGT	5 cut(s)	91, 481, 586, 799, 859
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	517, 1086
BstDEI	CTNAG	3 cut(s)	319, 807, 1098
BstDSI	CCRYGG	1 cut(s)	791
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	5 cut(s)	129, 271, 382, 669, 783
BstFNI	CGCG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	407, 942
BstMAI	GTCTC	3 cut(s)	192, 318, 989
BstMBI	GATC	2 cut(s)	404, 939
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 178, 572, 767, 914, 953, 962
BstNI	CCWGG	2 cut(s)	108, 774
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	2 cut(s)	106, 772
BstSFI	CTRYAG	2 cut(s)	490, 903
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	550, 667
BstXI	CCANNNNNNTGG	2 cut(s)	114, 515
BsuRI	GGCC	2 cut(s)	15, 887
BtgI	CCRYGG	1 cut(s)	791
BtgZI	GCGATG	2 cut(s)	133, 208
BtsCI	GGATG	5 cut(s)	129, 271, 382, 669, 783
BtsI	GCAGTG	1 cut(s)	1060
BtsIMutI	CAGTG	3 cut(s)	465, 804, 1060
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	517, 1086
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	1 cut(s)	366
Cfr10I	RCCGGY	2 cut(s)	8, 923
Cfr13I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
Csp6I	GTAC	3 cut(s)	337, 487, 754
CspAI	ACCGGT	1 cut(s)	923
CviAII	CATG	5 cut(s)	114, 169, 568, 792, 847
CviQI	GTAC	3 cut(s)	337, 487, 754
DdeI	CTNAG	3 cut(s)	319, 807, 1098
DpnI	GATC	2 cut(s)	406, 941
DpnII	GATC	2 cut(s)	404, 939
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	791
Eco47I	GGWCC	4 cut(s)	55, 104, 631, 782
Eco57I	CTGAAG	3 cut(s)	431, 840, 930
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	2 cut(s)	55, 782
EcoRII	CCWGG	2 cut(s)	106, 772
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	5 cut(s)	117, 172, 571, 795, 850
FalI	AAGNNNNNCTT	1 cut(s)	1081
FaqI	GGGAC	4 cut(s)	124, 535, 595, 795
FatI	CATG	5 cut(s)	113, 168, 567, 791, 846
FauI	CCCGC	1 cut(s)	833
Fnu4HI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
FokI	GGATG	5 cut(s)	136, 278, 389, 656, 790
Fsp4HI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
GsaI	CCCAGC	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	15, 887
HapII	CCGG	3 cut(s)	9, 924, 992
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	117, 172, 571, 795, 850
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	1008
HindII	GTYRAC	1 cut(s)	1008
HinfI	GANTC	6 cut(s)	185, 695, 704, 717, 1058, 1094
HpaII	CCGG	3 cut(s)	9, 924, 992
Hpy166II	GTNNAC	2 cut(s)	802, 1008
Hpy188I	TCNGA	5 cut(s)	404, 419, 703, 808, 1069
Hpy188III	TCNNGA	4 cut(s)	508, 818, 937, 1079
Hpy8I	GTNNAC	2 cut(s)	802, 1008
HpyAV	CCTTC	5 cut(s)	249, 367, 615, 943, 1085
HpyCH4III	ACNGT	5 cut(s)	91, 481, 586, 799, 859
HpyCH4V	TGCA	6 cut(s)	101, 262, 440, 683, 770, 929
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 178, 572, 767, 914, 953, 962
HpyF3I	CTNAG	3 cut(s)	319, 807, 1098
Hsp92II	CATG	5 cut(s)	117, 172, 571, 795, 850
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	404, 939
LguI	GCTCTTC	1 cut(s)	354
Lsp1109I	GCAGC	2 cut(s)	550, 667
LweI	GCATC	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	984
MalI	GATC	2 cut(s)	406, 941
MboI	GATC	2 cut(s)	404, 939
MboII	GAAGA	4 cut(s)	336, 371, 699, 1048
MfeI	CAATTG	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	6 cut(s)	83, 300, 330, 461, 862, 874
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	552
MslI	CAYNNNNRTG	2 cut(s)	118, 287
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	3 cut(s)	9, 924, 992
MspR9I	CCNGG	2 cut(s)	108, 774
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	108, 774
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	7 cut(s)	124, 178, 572, 767, 914, 953, 962
NcoI	CCATGG	1 cut(s)	791
NdeII	GATC	2 cut(s)	404, 939
NlaIII	CATG	5 cut(s)	117, 172, 571, 795, 850
NlaIV	GGNNCC	2 cut(s)	783, 922
NmeAIII	GCCGAG	1 cut(s)	656
NspI	RCATGY	1 cut(s)	850
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	4 cut(s)	695, 704, 717, 1058
PinAI	ACCGGT	1 cut(s)	923
PkrI	GCNGC	5 cut(s)	14, 565, 577, 682, 916
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	2 cut(s)	55, 782
Psp5II	RGGWCCY	2 cut(s)	55, 782
Psp6I	CCWGG	2 cut(s)	106, 772
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	106, 772
PspN4I	GGNNCC	2 cut(s)	783, 922
PspPI	GGNCC	5 cut(s)	55, 104, 631, 782, 886
PspPPI	RGGWCCY	2 cut(s)	55, 782
PstNI	CAGNNNCTG	1 cut(s)	857
RsaI	GTAC	3 cut(s)	338, 488, 755
RsaNI	GTAC	3 cut(s)	337, 487, 754
RseI	CAYNNNNRTG	2 cut(s)	118, 287
SapI	GCTCTTC	1 cut(s)	354
SatI	GCNGC	5 cut(s)	13, 564, 576, 681, 915
Sau3AI	GATC	2 cut(s)	404, 939
Sau96I	GGNCC	5 cut(s)	55, 104, 631, 782, 886
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	108, 774
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	2 cut(s)	490, 903
SinI	GGWCC	4 cut(s)	55, 104, 631, 782
SmiMI	CAYNNNNRTG	2 cut(s)	118, 287
SmlI	CTYRAG	2 cut(s)	348, 1079
SmoI	CTYRAG	2 cut(s)	348, 1079
Sse9I	AATT	6 cut(s)	83, 300, 330, 461, 862, 874
SsiI	CCGC	6 cut(s)	12, 191, 576, 840, 915, 947
StyD4I	CCNGG	2 cut(s)	106, 772
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	5 cut(s)	91, 481, 586, 799, 859
TaqI	TCGA	1 cut(s)	638
TasI	AATT	6 cut(s)	83, 300, 330, 461, 862, 874
TatI	WGTACW	2 cut(s)	486, 753
TauI	GCSGC	3 cut(s)	15, 578, 917
TfiI	GAWTC	4 cut(s)	695, 704, 717, 1058
TscAI	CASTG	3 cut(s)	472, 804, 1060
TseI	GCWGC	2 cut(s)	563, 680
TspDTI	ATGAA	5 cut(s)	221, 321, 342, 584, 868
TspRI	CASTG	3 cut(s)	472, 804, 1060
VpaK11BI	GGWCC	4 cut(s)	55, 104, 631, 782
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	2 cut(s)	300, 874
XceI	RCATGY	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.