RchiOBHm_Chr0c31g0501381

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000456
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCAGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCGGGTTGGTGGCTCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGGTCCATTGATCTAAACTTTGGTTCCACTGGTTCTACTAGTACTGACAGATCCATTGATCTAAATTTTGGGTCACGTGTCGGCTATGGTGTTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGACAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCGGTGACTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGGAGATGCAGACATGGCTTAG

Protein Analysis

203

Amino Acids

22.61

Weight (kDa)

4.85

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 82 1.2e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000456)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AciI CCGC 3 cut(s) 83, 540, 549
AclI AACGTT 1 cut(s) 267
AclWI GGATC 4 cut(s) 297, 310, 372, 433
AcsI RAATTY 2 cut(s) 257, 391
AcvI CACGTG 1 cut(s) 404
AfaI GTAC 2 cut(s) 134, 370
AfiI CCNNNNNNNGG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 403
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 155, 253, 467
AhlI ACTAGT 2 cut(s) 308, 365
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw21I GWGCWC 1 cut(s) 576
AlwI GGATC 4 cut(s) 297, 310, 372, 433
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 257, 391
AsiGI ACCGGT 1 cut(s) 66
Asp700I GAANNNNTTC 2 cut(s) 206, 471
AspS9I GGNCC 2 cut(s) 106, 330
AsuHPI GGTGA 3 cut(s) 446, 506, 563
AvaII GGWCC 1 cut(s) 330
BamHI GGATCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 76, 576
BauI CACGAG 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 199, 524
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 317, 416
BciT130I CCWGG 1 cut(s) 458
BcuI ACTAGT 2 cut(s) 308, 365
BfaI CTAG 2 cut(s) 309, 366
BglII AGATCT 1 cut(s) 159
BisI GCNGC 2 cut(s) 51, 541
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 2 cut(s) 52, 542
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 106, 330
BmiI GGNNCC 4 cut(s) 75, 218, 304, 352
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 51, 586
BpiI GAAGAC 2 cut(s) 199, 524
BpmI CTGGAG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 575
BpuEI CTTGAG 3 cut(s) 86, 212, 590
Bsa29I ATCGAT 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 27, 528
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 27, 528
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 1 cut(s) 589
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 44, 459
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 576
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 491
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 76, 576
Bsp143I GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
Bsp1720I GCTNAGC 1 cut(s) 575
BspACI CCGC 3 cut(s) 83, 540, 549
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 588
BspDI ATCGAT 1 cut(s) 428
BspLI GGNNCC 4 cut(s) 75, 218, 304, 352
BspPI GGATC 4 cut(s) 297, 310, 372, 433
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 27, 528
BssMI GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 92, 575, 609
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 9 cut(s) 162, 192, 292, 305, 340, 380, 388, 428, 432
BstMBI GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
BstMWI GCNNNNNNNGC 2 cut(s) 546, 605
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 199, 524
BstX2I RGATCY 3 cut(s) 159, 302, 377
BstYI RGATCY 3 cut(s) 159, 302, 377
Bsu15I ATCGAT 1 cut(s) 428
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 428
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 106, 330
ClaI ATCGAT 1 cut(s) 428
Csp6I GTAC 2 cut(s) 133, 369
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 5 cut(s) 433, 487, 491, 514, 604
CviQI GTAC 2 cut(s) 133, 369
DdeI CTNAG 3 cut(s) 92, 575, 609
DpnI GATC 9 cut(s) 161, 191, 291, 304, 339, 379, 387, 427, 431
DpnII GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 76, 576
Eco47I GGWCC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 574
Eco72I CACGTG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 456
EcoT22I ATGCAT 1 cut(s) 492
EcoT38I GRGCYC 2 cut(s) 76, 576
FaeI CATG 5 cut(s) 436, 490, 494, 517, 607
FaiI YATR 9 cut(s) 117, 183, 414, 434, 488, 492, 515, 546, 605
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 5 cut(s) 432, 486, 490, 513, 603
Fnu4HI GCNGC 2 cut(s) 51, 541
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 2 cut(s) 76, 576
Fsp4HI GCNGC 2 cut(s) 51, 541
FspBI CTAG 2 cut(s) 309, 366
GluI GCNGC 2 cut(s) 51, 541
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 67
Hin1II CATG 5 cut(s) 436, 490, 494, 517, 607
HinfI GANTC 3 cut(s) 96, 151, 554
HpaII CCGG 1 cut(s) 67
HphI GGTGA 3 cut(s) 446, 506, 563
Hpy188I TCNGA 3 cut(s) 174, 264, 529
Hpy188III TCNNGA 5 cut(s) 143, 155, 220, 236, 287
HpyAV CCTTC 3 cut(s) 176, 247, 482
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 204, 267, 403
HpyCH4V TGCA 2 cut(s) 490, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 605
HpyF3I CTNAG 3 cut(s) 92, 575, 609
HpySE526I ACGT 3 cut(s) 204, 267, 403
Hsp92II CATG 5 cut(s) 436, 490, 494, 517, 607
Kzo9I GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 8 cut(s) 29, 39, 80, 156, 233, 342, 443, 470
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 51, 586
MaeI CTAG 2 cut(s) 309, 366
MaeII ACGT 3 cut(s) 204, 267, 403
MaeIII GTNAC 3 cut(s) 62, 399, 551
MalI GATC 9 cut(s) 161, 191, 291, 304, 339, 379, 387, 427, 431
MboI GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
MboII GAAGA 2 cut(s) 199, 529
MflI RGATCY 3 cut(s) 159, 302, 377
MhlI GDGCHC 2 cut(s) 76, 576
MluCI AATT 4 cut(s) 5, 257, 295, 391
MlyI GAGTC 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 492
MroXI GAANNNNTTC 2 cut(s) 206, 471
MseI TTAA 1 cut(s) 129
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 546, 605
NdeII GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
NlaIII CATG 5 cut(s) 436, 490, 494, 517, 607
NlaIV GGNNCC 4 cut(s) 75, 218, 304, 352
NmuCI GTSAC 2 cut(s) 399, 551
NsiI ATGCAT 1 cut(s) 492
PdmI GAANNNNTTC 2 cut(s) 206, 471
PfeI GAWTC 2 cut(s) 96, 151
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 2 cut(s) 52, 542
PleI GAGTC 1 cut(s) 548
PmaCI CACGTG 1 cut(s) 404
PmlI CACGTG 1 cut(s) 404
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 456
PspCI CACGTG 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 4 cut(s) 75, 218, 304, 352
PspPI GGNCC 2 cut(s) 106, 330
PsuI RGATCY 3 cut(s) 159, 302, 377
RsaI GTAC 2 cut(s) 134, 370
RsaNI GTAC 2 cut(s) 133, 369
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 51, 541
Sau3AI GATC 9 cut(s) 159, 189, 289, 302, 337, 377, 385, 425, 429
Sau96I GGNCC 2 cut(s) 106, 330
ScaI AGTACT 1 cut(s) 370
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 2 cut(s) 76, 576
SetI ASST 7 cut(s) 207, 228, 270, 332, 406, 538, 576
SfaNI GCATC 2 cut(s) 51, 586
SinI GGWCC 1 cut(s) 330
SmlI CTYRAG 3 cut(s) 101, 227, 569
SmoI CTYRAG 3 cut(s) 101, 227, 569
SpeI ACTAGT 2 cut(s) 308, 365
Sse9I AATT 4 cut(s) 5, 257, 295, 391
SsiI CCGC 3 cut(s) 83, 540, 549
SspMI CTAG 2 cut(s) 309, 366
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 3 cut(s) 207, 270, 406
TaqI TCGA 3 cut(s) 192, 288, 428
TasI AATT 4 cut(s) 5, 257, 295, 391
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 2 cut(s) 96, 151
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 399, 551
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 2 cut(s) 399, 551
TspDTI ATGAA 2 cut(s) 158, 530
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 2 cut(s) 257, 391
XmnI GAANNNNTTC 2 cut(s) 206, 471
XspI CTAG 2 cut(s) 309, 366
ZrmI AGTACT 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.