Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000456

Physical Location & Seq

Genomic Coordinates Forward (+)

39390441 .. 39400200

Gene Structure 9760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49770

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAACCACGAACTCTGCAACTAATGGAGTTACAAACCCAGCAACAAATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACATATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

99

Amino Acids

11.3

Weight (kDa)

10.0

Isoelectric Point (pI)

74.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AciI	CCGC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	182
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	203
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	103
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	3 cut(s)	6, 123, 265
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	134, 259
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	1 cut(s)	156
BshTI	ACCGGT	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	102, 115
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	207, 236
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	6, 123, 265
BsrFI	RCCGGY	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	207, 236
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	210, 239
BstMBI	GATC	2 cut(s)	207, 236
BstSCI	CCNGG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	181
CspAI	ACCGGT	1 cut(s)	114
CviJI	RGCY	5 cut(s)	62, 101, 122, 156, 280
CviKI_1	RGCY	5 cut(s)	62, 101, 122, 156, 280
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	209, 238
DpnII	GATC	2 cut(s)	207, 236
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	124
FaiI	YATR	3 cut(s)	165, 228, 230
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	102, 115
HinfI	GANTC	2 cut(s)	144, 199
HpaII	CCGG	2 cut(s)	102, 115
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	4 cut(s)	191, 203, 267, 283
HpyAV	CCTTC	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	207, 236
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	53, 77, 115, 128, 204, 280
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	30, 110
MalI	GATC	2 cut(s)	209, 238
MboI	GATC	2 cut(s)	207, 236
MboII	GAAGA	1 cut(s)	246
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	8 cut(s)	70, 73, 77, 144, 158, 234, 281, 283
MseI	TTAA	1 cut(s)	177
MspI	CCGG	2 cut(s)	102, 115
MspR9I	CCNGG	1 cut(s)	103
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	2 cut(s)	207, 236
NlaIV	GGNNCC	3 cut(s)	6, 123, 265
PfeI	GAWTC	2 cut(s)	144, 199
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	100
PspFI	CCCAGC	2 cut(s)	39, 63
PspN4I	GGNNCC	3 cut(s)	6, 123, 265
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	207, 236
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	2 cut(s)	254, 275
SfaNI	GCATC	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	149, 274
SmoI	CTYRAG	2 cut(s)	149, 274
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	101
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	144, 199
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.