Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000456

Physical Location & Seq

Genomic Coordinates Forward (+)

41345797 .. 41346144

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCGGGTTGGTGGCTCTCTCGATCTCAATTTTGGATCCACTAGTTGTAACATCCCGTATCGTCACTTACCCGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

9.17

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	22 - 82	3.2e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Species

Orthologous Gene IDs

rosa_chinensis

RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	2 cut(s)	297, 310
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	1 cut(s)	134
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	155, 253
AhlI	ACTAGT	1 cut(s)	308
AlwI	GGATC	2 cut(s)	297, 310
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	62
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	2 cut(s)	309, 346
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	75, 218, 304
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	86, 212
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	42, 318
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	54, 67
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	159, 189, 289, 302
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	75, 218, 304
BspPI	GGATC	2 cut(s)	297, 310
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	4 cut(s)	159, 189, 289, 302
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	42, 318
BstKTI	GATC	4 cut(s)	162, 192, 292, 305
BstMBI	GATC	4 cut(s)	159, 189, 289, 302
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	159, 302
BstYI	RGATCY	2 cut(s)	159, 302
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	42, 318
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	66
CviJI	RGCY	6 cut(s)	14, 53, 74, 108, 233, 282
CviKI_1	RGCY	6 cut(s)	14, 53, 74, 108, 233, 282
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	4 cut(s)	161, 191, 291, 304
DpnII	GATC	4 cut(s)	159, 189, 289, 302
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	76
FaiI	YATR	2 cut(s)	117, 183
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	29, 305
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	309, 346
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	2 cut(s)	54, 67
HinfI	GANTC	2 cut(s)	96, 151
HpaII	CCGG	2 cut(s)	54, 67
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	174, 264
Hpy188III	TCNNGA	5 cut(s)	143, 155, 220, 236, 287
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	176, 247
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	2 cut(s)	204, 267
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	2 cut(s)	204, 267
Kzo9I	GATC	4 cut(s)	159, 189, 289, 302
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	5 cut(s)	29, 67, 80, 156, 233
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	309, 346
MaeII	ACGT	2 cut(s)	204, 267
MaeIII	GTNAC	3 cut(s)	62, 314, 329
MalI	GATC	4 cut(s)	161, 191, 291, 304
MboI	GATC	4 cut(s)	159, 189, 289, 302
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	2 cut(s)	159, 302
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	5, 257, 295
MnlI	CCTC	8 cut(s)	22, 25, 29, 96, 110, 187, 234, 236
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	129
MspI	CCGG	2 cut(s)	54, 67
MspR9I	CCNGG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	4 cut(s)	159, 189, 289, 302
NlaIV	GGNNCC	3 cut(s)	75, 218, 304
NmuCI	GTSAC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	96, 151
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	75, 218, 304
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	159, 302
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	4 cut(s)	159, 189, 289, 302
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	207, 228, 270
SfaNI	GCATC	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	101, 227
SmoI	CTYRAG	2 cut(s)	101, 227
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	3 cut(s)	5, 257, 295
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	309, 346
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	2 cut(s)	207, 270
TaqI	TCGA	2 cut(s)	192, 288
TasI	AATT	3 cut(s)	5, 257, 295
TfiI	GAWTC	2 cut(s)	96, 151
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	158
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	309, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.