RchiOBHm_Chr2g0121451

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
34319797 .. 34323645
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49397

Sequence Viewer

Length: 672 bp
ATGGAACCACGAACTCTGCAACTAATGGAGTTACAAACCCAGCAACAAATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGATGGGCTCCTACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCTAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCAATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTAAACTTTGGCTCACGTGTCGGCTATGGTGTTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGTCTCAACTCCTACAGAGATGCAAACATGGCTTACAACTTAGAATCACAATTATGGAATTCGAAAACTTTATTTAAACATAGAAGTTGGGTTTAA

Protein Analysis

223

Amino Acids

25.3

Weight (kDa)

5.77

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 98 2.6e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000456)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AciI CCGC 3 cut(s) 131, 540, 549
AclI AACGTT 1 cut(s) 315
AclWI GGATC 5 cut(s) 337, 345, 358, 372, 433
AcsI RAATTY 2 cut(s) 305, 634
AcvI CACGTG 1 cut(s) 404
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 326, 491
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 3 cut(s) 203, 301, 467
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 5 cut(s) 337, 345, 358, 372, 433
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 305, 634
Asp700I GAANNNNTTC 2 cut(s) 254, 471
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 446, 506
AsuII TTCGAA 1 cut(s) 638
BamHI GGATCC 1 cut(s) 350
BanII GRGCYC 2 cut(s) 124, 576
BauI CACGAG 1 cut(s) 282
BbrPI CACGTG 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 247, 524
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 111, 365, 416
BciT130I CCWGG 1 cut(s) 458
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 584
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 2 cut(s) 191, 357
BfmI CTRYAG 1 cut(s) 589
BglII AGATCT 1 cut(s) 207
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 103, 458
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 4 cut(s) 6, 123, 266, 352
BmrFI CCNGG 2 cut(s) 103, 458
BmsI GCATC 2 cut(s) 99, 586
BpiI GAAGAC 2 cut(s) 247, 524
Bpu14I TTCGAA 1 cut(s) 638
BpuEI CTTGAG 3 cut(s) 134, 260, 590
BpuMI CCSGG 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 75, 528
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 491
BseBI CCWGG 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 75, 528
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 326, 491
BseMII CTCAG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 92, 459
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 2 cut(s) 39, 63
BshFI GGCC 1 cut(s) 156
BshVI ATCGAT 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 576
BsiSI CCGG 2 cut(s) 102, 320
BslI CCNNNNNNNGG 2 cut(s) 326, 491
BsmAI GTCTC 1 cut(s) 584
BsnI GGCC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 638
Bsp1286I GDGCHC 2 cut(s) 124, 576
Bsp143I GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
BspACI CCGC 3 cut(s) 131, 540, 549
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 588
BspDI ATCGAT 1 cut(s) 428
BspLI GGNNCC 4 cut(s) 6, 123, 266, 352
BspPI GGATC 5 cut(s) 337, 345, 358, 372, 433
BspT104I TTCGAA 1 cut(s) 638
BssECI CCNNGG 2 cut(s) 75, 528
BssMI GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 638
BstDEI CTNAG 3 cut(s) 140, 575, 616
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 8 cut(s) 210, 240, 332, 353, 380, 388, 428, 432
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
BstMWI GCNNNNNNNGC 2 cut(s) 546, 605
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 101, 456
BstSFI CTRYAG 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 2 cut(s) 247, 524
BstX2I RGATCY 4 cut(s) 207, 329, 350, 377
BstYI RGATCY 4 cut(s) 207, 329, 350, 377
Bsu15I ATCGAT 1 cut(s) 428
BsuRI GGCC 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 428
BtsCI GGATG 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 428
Csp6I GTAC 1 cut(s) 181
CviAII CATG 5 cut(s) 433, 487, 491, 514, 604
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 3 cut(s) 140, 575, 616
DpnI GATC 8 cut(s) 209, 239, 331, 352, 379, 387, 427, 431
DpnII GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
DraI TTTAAA 1 cut(s) 652
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 124, 576
Eco53kI GAGCTC 1 cut(s) 574
Eco72I CACGTG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 456
EcoT22I ATGCAT 1 cut(s) 492
EcoT38I GRGCYC 2 cut(s) 124, 576
FaeI CATG 5 cut(s) 436, 490, 494, 517, 607
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 5 cut(s) 432, 486, 490, 513, 603
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 2 cut(s) 124, 576
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 2 cut(s) 191, 357
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 2 cut(s) 43, 67
HaeIII GGCC 1 cut(s) 156
HapII CCGG 2 cut(s) 102, 320
Hin1II CATG 5 cut(s) 436, 490, 494, 517, 607
HinfI GANTC 3 cut(s) 144, 199, 620
HpaII CCGG 2 cut(s) 102, 320
HphI GGTGA 2 cut(s) 446, 506
Hpy188I TCNGA 3 cut(s) 222, 312, 529
Hpy188III TCNNGA 4 cut(s) 191, 203, 268, 284
HpyAV CCTTC 3 cut(s) 224, 295, 482
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 3 cut(s) 252, 315, 403
HpyCH4V TGCA 3 cut(s) 19, 490, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 605
HpyF3I CTNAG 3 cut(s) 140, 575, 616
HpySE526I ACGT 3 cut(s) 252, 315, 403
Hsp92II CATG 5 cut(s) 436, 490, 494, 517, 607
Kzo9I GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 53, 77, 115, 281, 333, 443, 470
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 2 cut(s) 99, 586
MaeI CTAG 2 cut(s) 191, 357
MaeII ACGT 3 cut(s) 252, 315, 403
MaeIII GTNAC 2 cut(s) 30, 110
MalI GATC 8 cut(s) 209, 239, 331, 352, 379, 387, 427, 431
MboI GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
MboII GAAGA 2 cut(s) 247, 529
MflI RGATCY 4 cut(s) 207, 329, 350, 377
MhlI GDGCHC 2 cut(s) 124, 576
MluCI AATT 5 cut(s) 53, 305, 343, 626, 634
Mph1103I ATGCAT 1 cut(s) 492
MroXI GAANNNNTTC 2 cut(s) 254, 471
MseI TTAA 3 cut(s) 177, 651, 670
MslI CAYNNNNRTG 1 cut(s) 628
MspI CCGG 2 cut(s) 102, 320
MspR9I CCNGG 2 cut(s) 103, 458
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 546, 605
NciI CCSGG 1 cut(s) 103
NdeII GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
NlaIII CATG 5 cut(s) 436, 490, 494, 517, 607
NlaIV GGNNCC 4 cut(s) 6, 123, 266, 352
NsiI ATGCAT 1 cut(s) 492
NspV TTCGAA 1 cut(s) 638
PdmI GAANNNNTTC 2 cut(s) 254, 471
PfeI GAWTC 3 cut(s) 144, 199, 620
PkrI GCNGC 1 cut(s) 100
PmaCI CACGTG 1 cut(s) 404
PmlI CACGTG 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 456
PspCI CACGTG 1 cut(s) 404
PspFI CCCAGC 2 cut(s) 39, 63
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 4 cut(s) 6, 123, 266, 352
PspPI GGNCC 1 cut(s) 154
PsuI RGATCY 4 cut(s) 207, 329, 350, 377
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 628
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 3 cut(s) 177, 651, 670
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 8 cut(s) 207, 237, 329, 350, 377, 385, 425, 429
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 103, 458
SduI GDGCHC 2 cut(s) 124, 576
SetI ASST 6 cut(s) 255, 276, 318, 406, 538, 576
SfaNI GCATC 2 cut(s) 99, 586
SfcI CTRYAG 1 cut(s) 589
SfuI TTCGAA 1 cut(s) 638
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 3 cut(s) 149, 275, 569
SmoI CTYRAG 3 cut(s) 149, 275, 569
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 5 cut(s) 53, 305, 343, 626, 634
SsiI CCGC 3 cut(s) 131, 540, 549
SspMI CTAG 2 cut(s) 191, 357
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 101, 456
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 3 cut(s) 255, 318, 406
TaqI TCGA 3 cut(s) 240, 428, 638
TasI AATT 5 cut(s) 53, 305, 343, 626, 634
TfiI GAWTC 3 cut(s) 144, 199, 620
Tru1I TTAA 3 cut(s) 177, 651, 670
Tru9I TTAA 3 cut(s) 177, 651, 670
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 206, 530
XapI RAATTY 2 cut(s) 305, 634
XbaI TCTAGA 1 cut(s) 190
XmnI GAANNNNTTC 2 cut(s) 254, 471
XspI CTAG 2 cut(s) 191, 357
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.