RchiOBHm_Chr3g0462861

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
10393468 .. 10394031
564 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42919

Sequence Viewer

Length: 564 bp
ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCTATTGATCTAAACTTTGGCTCACGTGTCGGCTATGGTGTTGATGGAACGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGCAGACTACTTCCGAGGGAGGTAGCGGCTATGGCGGTGACTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGGAAATGCAGACATAGCTTAG

Protein Analysis

187

Amino Acids

20.85

Weight (kDa)

4.9

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 82 1e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000456)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AciI CCGC 3 cut(s) 83, 492, 501
AclI AACGTT 1 cut(s) 267
AclWI GGATC 3 cut(s) 289, 297, 310
AcsI RAATTY 1 cut(s) 257
AcvI CACGTG 1 cut(s) 356
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 278, 443
AflIII ACRYGT 1 cut(s) 355
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 155, 253, 419
AhlI ACTAGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 2 cut(s) 526, 560
AluI AGCT 2 cut(s) 526, 560
Alw21I GWGCWC 1 cut(s) 528
AlwI GGATC 3 cut(s) 289, 297, 310
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 66
Asp700I GAANNNNTTC 2 cut(s) 206, 423
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 398, 458, 515
BamHI GGATCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 76, 528
BauI CACGAG 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 317, 368
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 1 cut(s) 309
BglII AGATCT 2 cut(s) 159, 329
BisI GCNGC 2 cut(s) 51, 493
BlpI GCTNAGC 1 cut(s) 527
BlsI GCNGC 2 cut(s) 52, 494
Bme1390I CCNGG 2 cut(s) 55, 410
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 75, 218, 304
BmrFI CCNGG 2 cut(s) 55, 410
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 527
BpuEI CTTGAG 3 cut(s) 86, 212, 542
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 27, 480
BsaWI WCCGGW 2 cut(s) 66, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 443
Bse118I RCCGGY 1 cut(s) 66
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 27, 480
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 278, 443
BseMII CTCAG 1 cut(s) 541
BseRI GAGGAG 2 cut(s) 44, 411
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 3 cut(s) 54, 67, 272
BslI CCNNNNNNNGG 2 cut(s) 278, 443
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 76, 528
Bsp143I GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
Bsp1720I GCTNAGC 1 cut(s) 527
BspACI CCGC 3 cut(s) 83, 492, 501
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 540
BspLI GGNNCC 3 cut(s) 75, 218, 304
BspPI GGATC 3 cut(s) 289, 297, 310
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 27, 480
BssMI GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 92, 527, 561
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 384
BstMBI GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
BstMWI GCNNNNNNNGC 2 cut(s) 498, 557
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 2 cut(s) 53, 408
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 4 cut(s) 159, 281, 302, 329
BstYI RGATCY 4 cut(s) 159, 281, 302, 329
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 4 cut(s) 385, 439, 443, 466
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 92, 527, 561
DpnI GATC 8 cut(s) 161, 191, 283, 291, 304, 331, 339, 383
DpnII GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 526
Eco24I GRGCYC 2 cut(s) 76, 528
Eco53kI GAGCTC 1 cut(s) 526
Eco72I CACGTG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 444
EcoT38I GRGCYC 2 cut(s) 76, 528
FaeI CATG 4 cut(s) 388, 442, 446, 469
FaiI YATR 9 cut(s) 117, 183, 366, 386, 440, 444, 467, 498, 557
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 4 cut(s) 384, 438, 442, 465
Fnu4HI GCNGC 2 cut(s) 51, 493
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 2 cut(s) 76, 528
Fsp4HI GCNGC 2 cut(s) 51, 493
FspBI CTAG 1 cut(s) 309
GluI GCNGC 2 cut(s) 51, 493
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 54, 67, 272
Hin1II CATG 4 cut(s) 388, 442, 446, 469
HinfI GANTC 3 cut(s) 96, 151, 506
HpaII CCGG 3 cut(s) 54, 67, 272
HphI GGTGA 3 cut(s) 398, 458, 515
Hpy188I TCNGA 3 cut(s) 174, 264, 481
Hpy188III TCNNGA 5 cut(s) 143, 155, 220, 236, 287
HpyAV CCTTC 3 cut(s) 176, 247, 434
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 204, 267, 355
HpyCH4V TGCA 3 cut(s) 442, 469, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 498, 557
HpyF3I CTNAG 3 cut(s) 92, 527, 561
HpySE526I ACGT 3 cut(s) 204, 267, 355
Hsp92II CATG 4 cut(s) 388, 442, 446, 469
Kzo9I GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 8 cut(s) 29, 67, 80, 156, 233, 285, 395, 422
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 309
MaeII ACGT 3 cut(s) 204, 267, 355
MaeIII GTNAC 2 cut(s) 62, 503
MalI GATC 8 cut(s) 161, 191, 283, 291, 304, 331, 339, 383
MboI GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
MboII GAAGA 1 cut(s) 199
MflI RGATCY 4 cut(s) 159, 281, 302, 329
MhlI GDGCHC 2 cut(s) 76, 528
MluCI AATT 3 cut(s) 5, 257, 295
MlyI GAGTC 1 cut(s) 500
Mph1103I ATGCAT 1 cut(s) 444
MroXI GAANNNNTTC 2 cut(s) 206, 423
MseI TTAA 1 cut(s) 129
MspI CCGG 3 cut(s) 54, 67, 272
MspR9I CCNGG 2 cut(s) 55, 410
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 498, 557
NciI CCSGG 1 cut(s) 55
NdeII GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
NlaIII CATG 4 cut(s) 388, 442, 446, 469
NlaIV GGNNCC 3 cut(s) 75, 218, 304
NmuCI GTSAC 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 444
NspI RCATGY 1 cut(s) 469
PdmI GAANNNNTTC 2 cut(s) 206, 423
PfeI GAWTC 2 cut(s) 96, 151
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 2 cut(s) 52, 494
PleI GAGTC 1 cut(s) 500
PmaCI CACGTG 1 cut(s) 356
PmlI CACGTG 1 cut(s) 356
PpsI GAGTC 1 cut(s) 500
Ppu21I YACGTR 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 528
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 408
PspCI CACGTG 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 75, 218, 304
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 4 cut(s) 159, 281, 302, 329
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 528
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 51, 493
Sau3AI GATC 8 cut(s) 159, 189, 281, 289, 302, 329, 337, 381
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 55, 410
SduI GDGCHC 2 cut(s) 76, 528
SetI ASST 7 cut(s) 207, 228, 270, 358, 490, 528, 562
SfaNI GCATC 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 101, 227, 521
SmoI CTYRAG 3 cut(s) 101, 227, 521
SpeI ACTAGT 1 cut(s) 308
Sse9I AATT 3 cut(s) 5, 257, 295
SsiI CCGC 3 cut(s) 83, 492, 501
SspMI CTAG 1 cut(s) 309
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 53, 408
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 3 cut(s) 207, 270, 358
TaqI TCGA 2 cut(s) 192, 288
TasI AATT 3 cut(s) 5, 257, 295
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 2 cut(s) 96, 151
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 558
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 469
XmnI GAANNNNTTC 2 cut(s) 206, 423
XspI CTAG 1 cut(s) 309
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.