RchiOBHm_Chr3g0448741

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
844450 .. 845010
561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41616

Sequence Viewer

Length: 561 bp
ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGTTCCACTGGTTCTACTAGTAATGACAGATCCACTGACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTTGATAGGAGCATTTTAATGTGA

Protein Analysis

186

Amino Acids

20.73

Weight (kDa)

5.41

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 82 9.9e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000456)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AciI CCGC 3 cut(s) 83, 504, 513
AclI AACGTT 1 cut(s) 267
AclWI GGATC 4 cut(s) 289, 324, 336, 397
AcsI RAATTY 1 cut(s) 257
AcvI CACGTG 1 cut(s) 368
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 278, 455
AflIII ACRYGT 1 cut(s) 367
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 155, 253, 431
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 1 cut(s) 538
AluI AGCT 1 cut(s) 538
AlwI GGATC 4 cut(s) 289, 324, 336, 397
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 410, 470
BanII GRGCYC 1 cut(s) 76
BauI CACGAG 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 199, 488
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 159
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 55, 422
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 75, 218, 304
BmrFI CCNGG 2 cut(s) 55, 422
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 199, 488
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 3 cut(s) 86, 212, 554
BpuMI CCSGG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 27, 492
BsaWI WCCGGW 2 cut(s) 66, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 455
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 392
BseDI CCNNGG 2 cut(s) 27, 492
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 278, 455
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 44, 423
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 392
BsiSI CCGG 3 cut(s) 54, 67, 272
BslI CCNNNNNNNGG 2 cut(s) 278, 455
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
BspACI CCGC 3 cut(s) 83, 504, 513
BspANI GGCC 1 cut(s) 108
BspDI ATCGAT 1 cut(s) 392
BspLI GGNNCC 3 cut(s) 75, 218, 304
BspPI GGATC 4 cut(s) 289, 324, 336, 397
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 27, 492
BssMI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 9 cut(s) 162, 192, 284, 292, 332, 344, 352, 392, 396
BstMBI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 53, 420
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 199, 488
BstX2I RGATCY 4 cut(s) 159, 281, 329, 341
BstYI RGATCY 4 cut(s) 159, 281, 329, 341
Bsu15I ATCGAT 1 cut(s) 392
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 392
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 306, 333
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 392
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 4 cut(s) 397, 451, 455, 478
CviJI RGCY 8 cut(s) 14, 53, 74, 108, 233, 375, 519, 538
CviKI_1 RGCY 8 cut(s) 14, 53, 74, 108, 233, 375, 519, 538
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 92
DpnI GATC 9 cut(s) 161, 191, 283, 291, 331, 343, 351, 391, 395
DpnII GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 76
Eco72I CACGTG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 4 cut(s) 400, 454, 458, 481
FaiI YATR 8 cut(s) 117, 183, 378, 398, 452, 456, 479, 510
FatI CATG 4 cut(s) 396, 450, 454, 477
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 54, 67, 272
Hin1II CATG 4 cut(s) 400, 454, 458, 481
HinfI GANTC 2 cut(s) 96, 151
HpaII CCGG 3 cut(s) 54, 67, 272
HphI GGTGA 2 cut(s) 410, 470
Hpy188I TCNGA 3 cut(s) 174, 264, 493
Hpy188III TCNNGA 5 cut(s) 143, 155, 220, 236, 287
HpyAV CCTTC 3 cut(s) 176, 247, 446
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 204, 267, 367
HpyCH4V TGCA 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 3 cut(s) 204, 267, 367
Hsp92II CATG 4 cut(s) 400, 454, 458, 481
Kzo9I GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
LmnI GCTCC 2 cut(s) 79, 546
LpnPI CCDG 9 cut(s) 29, 67, 80, 156, 233, 285, 294, 407, 434
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 318
MaeII ACGT 3 cut(s) 204, 267, 367
MaeIII GTNAC 2 cut(s) 62, 363
MalI GATC 9 cut(s) 161, 191, 283, 291, 331, 343, 351, 391, 395
MboI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
MboII GAAGA 2 cut(s) 199, 493
MflI RGATCY 4 cut(s) 159, 281, 329, 341
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 5, 257, 295
Mph1103I ATGCAT 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 2 cut(s) 129, 554
MslI CAYNNNNRTG 1 cut(s) 554
MspI CCGG 3 cut(s) 54, 67, 272
MspR9I CCNGG 2 cut(s) 55, 422
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 510
NciI CCSGG 1 cut(s) 55
NdeII GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
NlaIII CATG 4 cut(s) 400, 454, 458, 481
NlaIV GGNNCC 3 cut(s) 75, 218, 304
NmuCI GTSAC 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 96, 151
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 1 cut(s) 52
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 368
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 420
PspCI CACGTG 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 75, 218, 304
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 4 cut(s) 159, 281, 329, 341
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 2 cut(s) 129, 554
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 55, 422
SduI GDGCHC 1 cut(s) 76
SetI ASST 6 cut(s) 207, 228, 270, 370, 502, 540
SfaNI GCATC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 3 cut(s) 101, 227, 533
SmoI CTYRAG 3 cut(s) 101, 227, 533
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 3 cut(s) 5, 257, 295
SsiI CCGC 3 cut(s) 83, 504, 513
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 53, 420
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 3 cut(s) 207, 270, 370
TaqI TCGA 3 cut(s) 192, 288, 392
TasI AATT 3 cut(s) 5, 257, 295
TfiI GAWTC 2 cut(s) 96, 151
Tru1I TTAA 2 cut(s) 129, 554
Tru9I TTAA 2 cut(s) 129, 554
TscAI CASTG 2 cut(s) 313, 340
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 158, 494
TspRI CASTG 2 cut(s) 313, 340
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 1 cut(s) 318
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.