RchiOBHm_Chr1g0376901

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
64053459 .. 64054034
576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60050

Sequence Viewer

Length: 576 bp
ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGTTCCACTGGTTCTATTAGTAATGACAGATCCACTGACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGTCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Protein Analysis

191

Amino Acids

21.26

Weight (kDa)

5.25

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 82 1e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000456)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c31g0501381 RchiOBHm_Chr1g0370351 RchiOBHm_Chr1g0371601 RchiOBHm_Chr1g0371691 RchiOBHm_Chr1g0372721 RchiOBHm_Chr1g0373691 RchiOBHm_Chr1g0374771 RchiOBHm_Chr1g0376901 RchiOBHm_Chr2g0121101 RchiOBHm_Chr2g0121131 RchiOBHm_Chr2g0121261 RchiOBHm_Chr2g0121411 RchiOBHm_Chr2g0121451 RchiOBHm_Chr2g0122031 RchiOBHm_Chr2g0122181 RchiOBHm_Chr2g0122361 RchiOBHm_Chr2g0122821 RchiOBHm_Chr2g0123341 RchiOBHm_Chr2g0123561 RchiOBHm_Chr2g0124121 RchiOBHm_Chr2g0124171 RchiOBHm_Chr2g0124261 RchiOBHm_Chr2g0124861 RchiOBHm_Chr2g0125451 RchiOBHm_Chr2g0125611 RchiOBHm_Chr2g0125711 RchiOBHm_Chr2g0125821 RchiOBHm_Chr2g0125951 RchiOBHm_Chr2g0126051 RchiOBHm_Chr2g0126461 RchiOBHm_Chr2g0126641 RchiOBHm_Chr2g0126791 RchiOBHm_Chr2g0126801 RchiOBHm_Chr2g0127011 RchiOBHm_Chr2g0127111 RchiOBHm_Chr2g0127221 RchiOBHm_Chr2g0127271 RchiOBHm_Chr2g0127481 RchiOBHm_Chr2g0128751 RchiOBHm_Chr2g0129721 RchiOBHm_Chr2g0129861 RchiOBHm_Chr2g0130621 RchiOBHm_Chr2g0130751 RchiOBHm_Chr2g0131011 RchiOBHm_Chr2g0131881 RchiOBHm_Chr2g0132391 RchiOBHm_Chr2g0132721 RchiOBHm_Chr2g0133491 RchiOBHm_Chr2g0133801 RchiOBHm_Chr2g0134381 RchiOBHm_Chr2g0135011 RchiOBHm_Chr2g0135621 RchiOBHm_Chr2g0136931 RchiOBHm_Chr2g0136971 RchiOBHm_Chr2g0138201 RchiOBHm_Chr2g0145771 RchiOBHm_Chr2g0146881 RchiOBHm_Chr2g0147201 RchiOBHm_Chr2g0148581 RchiOBHm_Chr2g0149121 RchiOBHm_Chr2g0155421 RchiOBHm_Chr2g0158921 RchiOBHm_Chr2g0158991 RchiOBHm_Chr2g0162461 RchiOBHm_Chr2g0163911 RchiOBHm_Chr2g0165271 RchiOBHm_Chr2g0165711 RchiOBHm_Chr2g0169451 RchiOBHm_Chr2g0169811 RchiOBHm_Chr2g0170901 RchiOBHm_Chr2g0171171 RchiOBHm_Chr3g0448741 RchiOBHm_Chr3g0448761 RchiOBHm_Chr3g0449851 RchiOBHm_Chr3g0450611 RchiOBHm_Chr3g0462491 RchiOBHm_Chr3g0462861 RchiOBHm_Chr3g0462891 RchiOBHm_Chr3g0462901 RchiOBHm_Chr3g0464701 RchiOBHm_Chr3g0464791 RchiOBHm_Chr3g0464871 RchiOBHm_Chr3g0467561 RchiOBHm_Chr3g0469431 RchiOBHm_Chr3g0469821 RchiOBHm_Chr7g0186381 RchiOBHm_Chr7g0197961 RchiOBHm_Chr7g0198171 RchiOBHm_Chr7g0198701 RchiOBHm_Chr7g0200721 RchiOBHm_Chr7g0201031 RchiOBHm_Chr7g0201551

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AciI CCGC 3 cut(s) 83, 504, 513
AclI AACGTT 1 cut(s) 267
AclWI GGATC 4 cut(s) 289, 324, 336, 397
AcsI RAATTY 1 cut(s) 257
AcvI CACGTG 1 cut(s) 368
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 278, 455
AflIII ACRYGT 1 cut(s) 367
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 155, 253, 431
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 1 cut(s) 538
AluI AGCT 1 cut(s) 538
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 4 cut(s) 289, 324, 336, 397
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 410, 470
BanII GRGCYC 2 cut(s) 76, 540
BauI CACGAG 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 199, 488
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 553
BglII AGATCT 1 cut(s) 159
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 55, 422
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 75, 218, 304
BmrFI CCNGG 2 cut(s) 55, 422
BmsI GCATC 2 cut(s) 51, 550
BpiI GAAGAC 2 cut(s) 199, 488
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 3 cut(s) 86, 212, 554
BpuMI CCSGG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 27, 492
BsaWI WCCGGW 2 cut(s) 66, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 455
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 392
BseDI CCNNGG 2 cut(s) 27, 492
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 278, 455
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 44, 423
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 3 cut(s) 54, 67, 272
BslI CCNNNNNNNGG 2 cut(s) 278, 455
BsmAI GTCTC 1 cut(s) 548
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 76, 540
Bsp143I GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
BspACI CCGC 3 cut(s) 83, 504, 513
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 552
BspDI ATCGAT 1 cut(s) 392
BspLI GGNNCC 3 cut(s) 75, 218, 304
BspPI GGATC 4 cut(s) 289, 324, 336, 397
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 27, 492
BssMI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 368
BstDEI CTNAG 3 cut(s) 92, 539, 573
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 9 cut(s) 162, 192, 284, 292, 332, 344, 352, 392, 396
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
BstMWI GCNNNNNNNGC 2 cut(s) 510, 569
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 53, 420
BstSFI CTRYAG 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 199, 488
BstX2I RGATCY 4 cut(s) 159, 281, 329, 341
BstYI RGATCY 4 cut(s) 159, 281, 329, 341
Bsu15I ATCGAT 1 cut(s) 392
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 392
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 306, 333
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 392
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 5 cut(s) 397, 451, 455, 478, 568
CviJI RGCY 9 cut(s) 14, 53, 74, 108, 233, 375, 519, 538, 572
CviKI_1 RGCY 9 cut(s) 14, 53, 74, 108, 233, 375, 519, 538, 572
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 92, 539, 573
DpnI GATC 9 cut(s) 161, 191, 283, 291, 331, 343, 351, 391, 395
DpnII GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 538
Eco24I GRGCYC 2 cut(s) 76, 540
Eco53kI GAGCTC 1 cut(s) 538
Eco72I CACGTG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 76, 540
FaeI CATG 5 cut(s) 400, 454, 458, 481, 571
FaiI YATR 9 cut(s) 117, 183, 378, 398, 452, 456, 479, 510, 569
FatI CATG 5 cut(s) 396, 450, 454, 477, 567
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 2 cut(s) 76, 540
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 54, 67, 272
Hin1II CATG 5 cut(s) 400, 454, 458, 481, 571
HinfI GANTC 2 cut(s) 96, 151
HpaII CCGG 3 cut(s) 54, 67, 272
HphI GGTGA 2 cut(s) 410, 470
Hpy188I TCNGA 3 cut(s) 174, 264, 493
Hpy188III TCNNGA 5 cut(s) 143, 155, 220, 236, 287
HpyAV CCTTC 3 cut(s) 176, 247, 446
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 204, 267, 367
HpyCH4V TGCA 2 cut(s) 454, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 569
HpyF3I CTNAG 3 cut(s) 92, 539, 573
HpySE526I ACGT 3 cut(s) 204, 267, 367
Hsp92II CATG 5 cut(s) 400, 454, 458, 481, 571
Kzo9I GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 9 cut(s) 29, 67, 80, 156, 233, 285, 294, 407, 434
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 51, 550
MaeII ACGT 3 cut(s) 204, 267, 367
MaeIII GTNAC 2 cut(s) 62, 363
MalI GATC 9 cut(s) 161, 191, 283, 291, 331, 343, 351, 391, 395
MboI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
MboII GAAGA 2 cut(s) 199, 493
MflI RGATCY 4 cut(s) 159, 281, 329, 341
MhlI GDGCHC 2 cut(s) 76, 540
MluCI AATT 3 cut(s) 5, 257, 295
Mph1103I ATGCAT 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 1 cut(s) 129
MspI CCGG 3 cut(s) 54, 67, 272
MspR9I CCNGG 2 cut(s) 55, 422
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 510, 569
NciI CCSGG 1 cut(s) 55
NdeII GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
NlaIII CATG 5 cut(s) 400, 454, 458, 481, 571
NlaIV GGNNCC 3 cut(s) 75, 218, 304
NmuCI GTSAC 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 96, 151
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 1 cut(s) 52
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 540
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 420
PspCI CACGTG 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 75, 218, 304
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 4 cut(s) 159, 281, 329, 341
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 540
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 9 cut(s) 159, 189, 281, 289, 329, 341, 349, 389, 393
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 55, 422
SduI GDGCHC 2 cut(s) 76, 540
SetI ASST 6 cut(s) 207, 228, 270, 370, 502, 540
SfaNI GCATC 2 cut(s) 51, 550
SfcI CTRYAG 1 cut(s) 553
SmlI CTYRAG 3 cut(s) 101, 227, 533
SmoI CTYRAG 3 cut(s) 101, 227, 533
Sse9I AATT 3 cut(s) 5, 257, 295
SsiI CCGC 3 cut(s) 83, 504, 513
SstI GAGCTC 1 cut(s) 540
StyD4I CCNGG 2 cut(s) 53, 420
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 3 cut(s) 207, 270, 370
TaqI TCGA 3 cut(s) 192, 288, 392
TasI AATT 3 cut(s) 5, 257, 295
TfiI GAWTC 2 cut(s) 96, 151
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 2 cut(s) 313, 340
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 158, 494
TspRI CASTG 2 cut(s) 313, 340
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.