Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0008927

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCAGCCACAGCTTTGTTGCAAAAGGCAGCCCAAATTGGTGCAACTTCAACTGACACGTCATCACTGCTTGGAAGTTTTGGATTGAAGTGCAACAACAACAATATTACTAGTAGTGCTAGTCAAGCAGTGATTCAAGTTCAAGATGGGAGCAAAGTTTGTGGACTCTATGGCACTGTGGAGAACCCAGGAGCTCATGATCATCTACTGCACATGCATCAAGCGAAACGCCGCCACATACAGAGCGAAGAGAGCGCCGGAGGAGGGCAGACTAGGGATTTCCTTGGTGTTGGCGTGCAGACCATTTGCCACTCTTCACCAATCAATGGATATTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008356 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

113

Amino Acids

11.87

Weight (kDa)

7.0

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03840 AT1G03840 AT5G44160 AT5G44160
fragaria_vesca	FvH4_6g26760 FvH4_6g26760 FvH4_6g26760
prunus_persica	Prupe.3G128100_v2.0.a1 Prupe.3G128100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c19g0500141 RchiOBHm_Chr0c19g0500151 RchiOBHm_Chr2g0128541
rosa_laevigata	RLG00000018991
rosa_multiflora	Rmu_sc0002162.1_g000007
rosa_roxburghii	Rroxscaffold_2G00115690 Rroxscaffold_2G00116120
rosa_rugosa	Rorug02G0277800
rosa_samantha	Rh2AG329200 Rh2BG338900 Rh2CG315900 Rh2DG355800
rosa_wichuraiana	Rw2G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	264, 326
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	4 cut(s)	51, 88, 137, 143
AhlI	ACTAGT	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	14, 194
AluI	AGCT	2 cut(s)	14, 194
Alw21I	GWGCWC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	199
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	3 cut(s)	111, 120, 273
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	2 cut(s)	30, 232
BlsI	GCNGC	2 cut(s)	31, 233
Bme1390I	CCNGG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	187, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 326
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	187, 283
BseLI	CCNNNNNNNGG	2 cut(s)	264, 326
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	2 cut(s)	194, 317
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	264, 326
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	187, 283
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	243, 319
BstC8I	GCNNGC	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 252
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	41
BtrI	CACGTC	1 cut(s)	60
BtsI	GCAGTG	2 cut(s)	65, 135
BtsIMutI	CAGTG	3 cut(s)	65, 135, 174
Cac8I	GCNNGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	2 cut(s)	197, 214
CviJI	RGCY	4 cut(s)	8, 14, 32, 194
CviKI_1	RGCY	4 cut(s)	8, 14, 32, 194
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	243, 319
EarI	CTCTTC	2 cut(s)	243, 319
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	2 cut(s)	200, 217
FaiI	YATR	4 cut(s)	171, 198, 215, 239
FatI	CATG	2 cut(s)	196, 213
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	30, 232
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	30, 232
FspBI	CTAG	3 cut(s)	111, 120, 273
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	2 cut(s)	30, 232
HaeII	RGCGCY	1 cut(s)	258
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	2 cut(s)	200, 217
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	133, 165
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188III	TCNNGA	2 cut(s)	143, 197
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	6 cut(s)	22, 44, 93, 211, 217, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 252
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	200, 217
HspAI	GCGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	150, 191
LpnPI	CCDG	3 cut(s)	174, 201, 271
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	111, 120, 273
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	260, 306
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	2 cut(s)	254, 257
Mph1103I	ATGCAT	1 cut(s)	219
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	125, 252
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	200, 217
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	1 cut(s)	217
PagI	TCATGA	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	31, 233
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	196
SatI	GCNGC	2 cut(s)	30, 232
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	3 cut(s)	16, 62, 196
SfaNI	GCATC	1 cut(s)	226
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	3 cut(s)	111, 120, 273
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	62
TasI	AATT	1 cut(s)	36
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	3 cut(s)	72, 135, 181
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	3 cut(s)	72, 135, 181
Van91I	CCANNNNNTGG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	3 cut(s)	111, 120, 273
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.