Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008927

Physical Location & Seq

Genomic Coordinates Reverse (-)

40086679 .. 40089747

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG315900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCCACCAACAGATTCTTGTGTGAAATATGTGGTAAGGGATTTCAGAGAGACCAAAACCTACAGCTGCACCGCCGTGGACACAACCTTCCATGGAAGCTCAAGCAAAGAACAAGCAAAGAGCCGAGGAAGCGCGTCTACGTGTGCCCGGAAAAGAGTTGCGTCCACCACCACCCGTCTAGGGCGCTCGGAGATCTGACCGGAATAAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGCGGTACGCGGTGCAGTCGGATTGGAAAGCTCACTCAAAGACCTGTGGCACTAGGGAGTACAAATGTGACTGCGGAACTCTATTTTCACGGCGTGATAGCTTCATCACACACCGGGCCTTCTGTGATGCCTTAGCTGAAGAAACAGCTAGAGTAAATGCAGTATCCAACATCCACAACAATGCAATGCCCAGTAATATCAACTATCATCACTACATGGGAAATAATGCATCGTCACTACTACTAGGACCTCCGAACATGCCCCAACTACAATTTTCTTCTATTTTTAAACCAATCTCCAGCAATGATACCCCTGACACCGTGAGCCAAAATACCCGCGGTCTATCTCTTTGGATGGGCCAAGGATCCAACGGCACCCACGAAGAAATGACTGTTAATAATCAGCATCATCACCATCAACTTGGGTCTGTGAGTTCATCAGCTGGTTCAATATTTGGTGATCCTAATAACATTAGTGTTTCGTGTTCAGAGCCTCCTCCGCCTTCTGATCATTATCAACTGAATTGGGTTCTTGGAAGTAATAACAAGCTTTCTACATCGAACAATGCTCATCATCAAGATCAGTTAACAATCACAAGCACTAGTGCTGCTAACTTACTTCCTTCTTTGTACACACATCAAACACCTTCAGCAAATATGTCAGCCACAGCTTTGTTGCAAAAGGCAGCCCAAATTGGTGCAACTTCAACTGACACGTCATCACTGCTTGGAAGTTTTGGATTGAAGTGCAACAACAACAATATTACTAGTAGTGCTAGTCAAGCAGTGATTCAAGTTCAAGATGGGAGCAAAGTTTGTGGACTCTATGGCACTGTGGAGAACCCAGGAGCTCATGATCATCTACTGCACATGCATCAAGCGAAACGCCGCCACATACAGAGCGAAGAGAGCGCCGGAGGAGGGCAGACTAGGGATTTCCTTGGTGTTGGCGTGCAGACCATTTGCCACTCTTCACCAATCAATGGATATTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008356 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

420

Amino Acids

46.29

Weight (kDa)

9.1

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	43 - 77	6.5e-21	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	81 - 105	4.1e-15	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	108 - 147	1.4e-24	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03840 AT1G03840 AT5G44160 AT5G44160
fragaria_vesca	FvH4_6g26760 FvH4_6g26760 FvH4_6g26760
prunus_persica	Prupe.3G128100_v2.0.a1 Prupe.3G128100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c19g0500141 RchiOBHm_Chr0c19g0500151 RchiOBHm_Chr2g0128541
rosa_laevigata	RLG00000018991
rosa_multiflora	Rmu_sc0002162.1_g000007
rosa_roxburghii	Rroxscaffold_2G00115690 Rroxscaffold_2G00116120
rosa_rugosa	Rorug02G0277800
rosa_samantha	Rh2AG329200 Rh2BG338900 Rh2CG315900 Rh2DG355800
rosa_wichuraiana	Rw2G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	1247
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	3 cut(s)	135, 275, 603
AciI	CCGC	9 cut(s)	73, 223, 268, 275, 339, 601, 603, 764, 1153
AclWI	GGATC	3 cut(s)	624, 637, 719
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	423, 897
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	3 cut(s)	272, 326, 896
AfiI	CCNNNNNNNGG	3 cut(s)	181, 1185, 1247
AflIII	ACRYGT	2 cut(s)	141, 978
AgsI	TTSAA	5 cut(s)	714, 972, 1009, 1058, 1064
AhlI	ACTAGT	2 cut(s)	866, 1031
AjiI	CACGTC	1 cut(s)	981
AjnI	CCWGG	1 cut(s)	1108
AleI	CACNNNNGTG	1 cut(s)	75
Alw21I	GWGCWC	2 cut(s)	263, 1117
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	3 cut(s)	624, 637, 719
AoxI	GGCC	3 cut(s)	3, 381, 622
ApeKI	GCWGC	3 cut(s)	67, 872, 950
Asp700I	GAANNNNTTC	1 cut(s)	215
AspLEI	GCGC	3 cut(s)	135, 187, 1178
AspS9I	GGNCC	3 cut(s)	381, 512, 622
AsuC2I	CCSGG	2 cut(s)	149, 380
AsuHPI	GGTGA	3 cut(s)	668, 734, 1230
AvaII	GGWCC	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	1117
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
Bbv12I	GWGCWC	2 cut(s)	263, 1117
BbvI	GCAGC	3 cut(s)	54, 859, 962
BccI	CCATC	3 cut(s)	613, 687, 1061
BceAI	ACGGC	4 cut(s)	60, 247, 371, 652
BciT130I	CCWGG	1 cut(s)	1110
BciVI	GTATCC	1 cut(s)	439
BclI	TGATCA	2 cut(s)	772, 1120
BcnI	CCSGG	2 cut(s)	149, 380
BcoDI	GTCTC	1 cut(s)	45
BcuI	ACTAGT	2 cut(s)	866, 1031
BfaI	CTAG	8 cut(s)	180, 318, 414, 509, 867, 1032, 1041, 1194
BfmI	CTRYAG	1 cut(s)	62
BfoI	RGCGCY	2 cut(s)	188, 1179
BfuI	GTATCC	1 cut(s)	439
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	5 cut(s)	68, 223, 873, 951, 1153
BlsI	GCNGC	5 cut(s)	69, 224, 874, 952, 1154
Bme1390I	CCNGG	3 cut(s)	149, 380, 1110
Bme18I	GGWCC	1 cut(s)	512
BmgBI	CACGTC	1 cut(s)	981
BmgT120I	GGNCC	3 cut(s)	381, 512, 622
BmiI	GGNNCC	2 cut(s)	631, 640
BmrFI	CCNGG	3 cut(s)	149, 380, 1110
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	4 cut(s)	382, 503, 679, 1147
BmuI	ACTGGG	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	397
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	149, 380
BsaAI	YACGTR	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	777
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	7 cut(s)	76, 92, 125, 601, 625, 1108, 1204
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 1185, 1247
Bse1I	ACTGG	1 cut(s)	456
Bse3DI	GCAATG	2 cut(s)	456, 574
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	1110
BseDI	CCNNGG	7 cut(s)	76, 92, 125, 601, 625, 1108, 1204
BseGI	GGATG	2 cut(s)	435, 624
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	3 cut(s)	181, 1185, 1247
BseMI	GCAATG	2 cut(s)	456, 574
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	2 cut(s)	750, 1197
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	54, 859, 962
BsgI	GTGCAG	4 cut(s)	53, 299, 1115, 1238
Bsh1236I	CGCG	3 cut(s)	135, 275, 603
BshFI	GGCC	3 cut(s)	5, 383, 624
BshNI	GGYRCC	1 cut(s)	638
BsiHKAI	GWGCWC	2 cut(s)	263, 1117
BsiSI	CCGG	4 cut(s)	149, 201, 379, 1179
BslI	CCNNNNNNNGG	3 cut(s)	181, 1185, 1247
BsmAI	GTCTC	1 cut(s)	45
BsnI	GGCC	3 cut(s)	5, 383, 624
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	3 cut(s)	149, 263, 1117
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	9 cut(s)	73, 223, 268, 275, 339, 601, 603, 764, 1153
BspANI	GGCC	3 cut(s)	5, 383, 624
BspFNI	CGCG	3 cut(s)	135, 275, 603
BspHI	TCATGA	1 cut(s)	1117
BspLI	GGNNCC	2 cut(s)	631, 640
BspPI	GGATC	3 cut(s)	624, 637, 719
BspT107I	GGYRCC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	456, 574
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	7 cut(s)	76, 92, 125, 601, 625, 1108, 1204
BssMI	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
BssT1I	CCWWGG	3 cut(s)	92, 625, 1204
Bst2UI	CCWGG	1 cut(s)	1110
Bst4CI	ACNGT	3 cut(s)	586, 658, 1099
Bst6I	CTCTTC	2 cut(s)	1164, 1240
BstAUI	TGTACA	1 cut(s)	894
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	227, 1217
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	3 cut(s)	76, 92, 601
BstF5I	GGATG	2 cut(s)	435, 624
BstFNI	CGCG	3 cut(s)	135, 275, 603
BstH2I	RGCGCY	2 cut(s)	188, 1179
BstHHI	GCGC	3 cut(s)	135, 187, 1178
BstKTI	GATC	6 cut(s)	196, 632, 727, 775, 847, 1123
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 231, 763, 1046, 1173
BstNI	CCWGG	1 cut(s)	1110
BstNSI	RCATGY	2 cut(s)	526, 1138
BstSCI	CCNGG	3 cut(s)	147, 378, 1108
BstSFI	CTRYAG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	3 cut(s)	135, 275, 603
BstV1I	GCAGC	3 cut(s)	54, 859, 962
BstX2I	RGATCY	2 cut(s)	193, 629
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	2 cut(s)	193, 629
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	5, 383, 624
BtgI	CCRYGG	3 cut(s)	76, 92, 601
BtrI	CACGTC	1 cut(s)	981
BtsCI	GGATG	2 cut(s)	435, 624
BtsI	GCAGTG	2 cut(s)	986, 1056
BtsIMutI	CAGTG	3 cut(s)	986, 1056, 1095
Cac8I	GCNNGC	2 cut(s)	227, 1217
CciI	TCATGA	1 cut(s)	1117
CfoI	GCGC	3 cut(s)	135, 187, 1178
Cfr13I	GGNCC	3 cut(s)	381, 512, 622
Cfr42I	CCGCGG	1 cut(s)	604
CseI	GACGC	2 cut(s)	124, 151
Csp6I	GTAC	3 cut(s)	271, 325, 895
CspCI	CAANNNNNGTGG	2 cut(s)	1063, 1098
CviAII	CATG	5 cut(s)	93, 481, 523, 1118, 1135
CviQI	GTAC	3 cut(s)	271, 325, 895
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	6 cut(s)	195, 631, 726, 774, 846, 1122
DpnII	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
DraI	TTTAAA	1 cut(s)	553
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	1164, 1240
EarI	CTCTTC	2 cut(s)	1164, 1240
EciI	GGCGGA	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	3 cut(s)	92, 625, 1204
Eco24I	GRGCYC	1 cut(s)	1117
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	1115
Eco57I	CTGAAG	2 cut(s)	423, 897
EcoICRI	GAGCTC	1 cut(s)	1115
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	1108
EcoT14I	CCWWGG	3 cut(s)	92, 625, 1204
EcoT22I	ATGCAT	2 cut(s)	496, 1140
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	3 cut(s)	92, 625, 1204
FaeI	CATG	5 cut(s)	96, 484, 526, 1121, 1138
FaiI	YATR	9 cut(s)	31, 94, 482, 524, 923, 1092, 1119, 1136, 1160
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	5 cut(s)	92, 480, 522, 1117, 1134
FauI	CCCGC	1 cut(s)	608
FbaI	TGATCA	2 cut(s)	772, 1120
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	68, 223, 873, 951, 1153
FokI	GGATG	2 cut(s)	422, 631
FriOI	GRGCYC	1 cut(s)	1117
Fsp4HI	GCNGC	5 cut(s)	68, 223, 873, 951, 1153
FspBI	CTAG	8 cut(s)	180, 318, 414, 509, 867, 1032, 1041, 1194
GlaI	GCGC	3 cut(s)	134, 186, 1177
GluI	GCNGC	5 cut(s)	68, 223, 873, 951, 1153
GsuI	CTGGAG	1 cut(s)	547
HaeII	RGCGCY	2 cut(s)	188, 1179
HaeIII	GGCC	3 cut(s)	5, 383, 624
HapII	CCGG	4 cut(s)	149, 201, 379, 1179
HgaI	GACGC	2 cut(s)	124, 151
HhaI	GCGC	3 cut(s)	135, 187, 1178
Hin1II	CATG	5 cut(s)	96, 484, 526, 1121, 1138
Hin6I	GCGC	3 cut(s)	133, 185, 1176
HinP1I	GCGC	3 cut(s)	133, 185, 1176
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	3 cut(s)	15, 1054, 1086
HpaI	GTTAAC	1 cut(s)	852
HpaII	CCGG	4 cut(s)	149, 201, 379, 1179
HphI	GGTGA	3 cut(s)	668, 734, 1230
Hpy166II	GTNNAC	6 cut(s)	80, 139, 166, 852, 897, 1085
Hpy188I	TCNGA	7 cut(s)	48, 191, 198, 286, 519, 754, 772
Hpy188III	TCNNGA	3 cut(s)	842, 1064, 1118
Hpy8I	GTNNAC	6 cut(s)	80, 139, 166, 852, 897, 1085
HpyAV	CCTTC	5 cut(s)	98, 394, 777, 897, 921
HpyCH4III	ACNGT	3 cut(s)	586, 658, 1099
HpyCH4IV	ACGT	2 cut(s)	141, 980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 231, 763, 1046, 1173
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	2 cut(s)	141, 980
Hsp92II	CATG	5 cut(s)	96, 484, 526, 1121, 1138
HspAI	GCGC	3 cut(s)	133, 185, 1176
Ksp22I	TGATCA	2 cut(s)	772, 1120
KspAI	GTTAAC	1 cut(s)	852
KspI	CCGCGG	1 cut(s)	604
Kzo9I	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
LmnI	GCTCC	3 cut(s)	266, 1071, 1112
Lsp1109I	GCAGC	3 cut(s)	54, 859, 962
LweI	GCATC	4 cut(s)	382, 503, 679, 1147
MaeI	CTAG	8 cut(s)	180, 318, 414, 509, 867, 1032, 1041, 1194
MaeII	ACGT	2 cut(s)	141, 980
MaeIII	GTNAC	2 cut(s)	332, 498
MalI	GATC	6 cut(s)	195, 631, 726, 774, 846, 1122
MboI	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
MboII	GAAGA	6 cut(s)	250, 416, 534, 659, 1181, 1227
MflI	RGATCY	2 cut(s)	193, 629
MhlI	GDGCHC	3 cut(s)	149, 263, 1117
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	536, 787, 957
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1080
MmeI	TCCRAC	3 cut(s)	264, 456, 657
MnlI	CCTC	6 cut(s)	120, 525, 768, 771, 1175, 1178
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	496, 1140
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	552, 660, 851
MslI	CAYNNNNRTG	2 cut(s)	75, 444
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	67, 603, 707
MspI	CCGG	4 cut(s)	149, 201, 379, 1179
MspR9I	CCNGG	3 cut(s)	149, 380, 1110
MvaI	CCWGG	1 cut(s)	1110
MvnI	CGCG	3 cut(s)	135, 275, 603
MwoI	GCNNNNNNNGC	5 cut(s)	130, 231, 763, 1046, 1173
NciI	CCSGG	2 cut(s)	149, 380
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
NlaIII	CATG	5 cut(s)	96, 484, 526, 1121, 1138
NlaIV	GGNNCC	2 cut(s)	631, 640
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	332, 498
NsiI	ATGCAT	2 cut(s)	496, 1140
NspI	RCATGY	2 cut(s)	526, 1138
OliI	CACNNNNGTG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	1117
PcsI	WCGNNNNNNNCGW	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	15, 1054
PflMI	CCANNNNNTGG	1 cut(s)	1247
PkrI	GCNGC	5 cut(s)	69, 224, 874, 952, 1154
PleI	GAGTC	1 cut(s)	1080
PpsI	GAGTC	1 cut(s)	1080
Ppu21I	YACGTR	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	1117
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	1108
PspGI	CCWGG	1 cut(s)	1108
PspN4I	GGNNCC	2 cut(s)	631, 640
PspPI	GGNCC	3 cut(s)	381, 512, 622
PspPPI	RGGWCCY	1 cut(s)	512
PsuI	RGATCY	2 cut(s)	193, 629
PvuII	CAGCTG	2 cut(s)	67, 707
RsaI	GTAC	3 cut(s)	272, 326, 896
RsaNI	GTAC	3 cut(s)	271, 325, 895
RseI	CAYNNNNRTG	2 cut(s)	75, 444
SacI	GAGCTC	1 cut(s)	1117
SacII	CCGCGG	1 cut(s)	604
SaqAI	TTAA	3 cut(s)	552, 660, 851
SatI	GCNGC	5 cut(s)	68, 223, 873, 951, 1153
Sau3AI	GATC	6 cut(s)	193, 629, 724, 772, 844, 1120
Sau96I	GGNCC	3 cut(s)	381, 512, 622
SchI	GAGTC	1 cut(s)	1080
ScrFI	CCNGG	3 cut(s)	149, 380, 1110
SduI	GDGCHC	3 cut(s)	149, 263, 1117
SfaNI	GCATC	4 cut(s)	382, 503, 679, 1147
SfcI	CTRYAG	1 cut(s)	62
Sfr303I	CCGCGG	1 cut(s)	604
SgrBI	CCGCGG	1 cut(s)	604
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	2 cut(s)	75, 444
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	2 cut(s)	866, 1031
Sse9I	AATT	3 cut(s)	536, 787, 957
SsiI	CCGC	9 cut(s)	73, 223, 268, 275, 339, 601, 603, 764, 1153
SspI	AATATT	2 cut(s)	717, 1027
SspMI	CTAG	8 cut(s)	180, 318, 414, 509, 867, 1032, 1041, 1194
SstI	GAGCTC	1 cut(s)	1117
StyD4I	CCNGG	3 cut(s)	147, 378, 1108
StyI	CCWWGG	3 cut(s)	92, 625, 1204
TaaI	ACNGT	3 cut(s)	586, 658, 1099
TaiI	ACGT	2 cut(s)	144, 983
TaqI	TCGA	1 cut(s)	824
TasI	AATT	3 cut(s)	536, 787, 957
TatI	WGTACW	2 cut(s)	324, 894
TauI	GCSGC	2 cut(s)	225, 1155
TfiI	GAWTC	2 cut(s)	15, 1054
Tru1I	TTAA	3 cut(s)	552, 660, 851
Tru9I	TTAA	3 cut(s)	552, 660, 851
TscAI	CASTG	3 cut(s)	993, 1056, 1102
TseFI	GTSAC	2 cut(s)	332, 498
TseI	GCWGC	3 cut(s)	67, 872, 950
Tsp45I	GTSAC	2 cut(s)	332, 498
TspDTI	ATGAA	2 cut(s)	358, 690
TspRI	CASTG	3 cut(s)	993, 1056, 1102
Van91I	CCANNNNNTGG	1 cut(s)	1247
VpaK11BI	GGWCC	1 cut(s)	512
XceI	RCATGY	2 cut(s)	526, 1138
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	8 cut(s)	180, 318, 414, 509, 867, 1032, 1041, 1194
Zsp2I	ATGCAT	2 cut(s)	496, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.