Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008927

Physical Location & Seq

Genomic Coordinates Reverse (-)

47340295 .. 47343337

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGTTGGAGAAGATCAATATGGCTCATGAAGAAGAAGCAATTAACTCAAATGGGTTTCTTCAAGACCCAGTTGCGGTACTTGGATCCAATCCTCCTCCTGTCAAAAAGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAGGCTGAAGTAATAGCCTTGTCTCCAAAGACTCTGATGGCCACCAACAGATTCTTGTGTGAAATATGTGGTAAGGGATTTCAGAGAGACCAAAACCTACAGCTGCACCGCCGTGGACACAACCTTCCATGGAAGCTCAAGCAAAGAACAAGCAAAGAGCCGAGGAAGCGCGTCTACGTGTGCCCGGAAAAGAGTTGCGTCCACCACCACCCGTCTAGGGCGCTCGGAGATCTGACAGGAATAAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGCGGTACGCGGTGCAGTCGGATTGGAAAGCTCACTCAAAGACCTGTGGCACTAGGGAGTACAAATGTGACTGCGGAACTCTATTTTCACGGCGTGATAGCTTCATCACACACCGGGCCTTCTGTGATGCCTTAGCTGAAGAAACAGCTAGAGTAAATGCAGTATCCAACATCCACAACAATGCAATGCCCAGTAATATCAACTATCATCACTACATGGGAAATAATGCATCGTCACTACTACTAGGACCTCCGAACATGCCCCAACTACAATTTTCTTCTATTTTTAAACCAATCTCCAGCAATGATACCCCTGACACCGTGAGCCAAAATACCCACGGTCTATCTCTTTGGATGGGCCAAGGATCGAACGGCACCCACGAAGAAATGACTGTTAATAATCAGCATCATCACCATCAACTTGGGTCTGTGAGTTCATCAGCTGGTTCAATATTTGGTGATCCTAATAACATTAGTGTTTCGTGTTCAGAGCCTCCTCCGCCTTCTGATCATTATCAACTGAATTGGGTTCTTGGAAGTAATAACAAGCTTTCTACATCGAACAATGCTCATCATCAAGATCAGTTAACAATCACAAGCACTAGTGCTGCTAACTCACTTCCTTCTTTGTACACACATCAAACGCCTTCAGCAAATATGTCAGCCACAGCTTTGTTGCAAAAGGCAGCCCAAATTGGTGCAACTTCAACTGACACGTCATCACTGCTTGGAAGTTTTGGATTGAAGTGCAACAACAACAATATTACTAGTAGTGCTAGTCAAGCAGTGATTCAAGTTCAAGATGGGAGCAAAGTTTGTGGACTCTATGGCACTGTGGAGAACCCAGGAGCTCATGATCATCTACTGCACATGCATCAAGCGAAACGCCGCCACATACAGAGCGAAGAGAGCGCCGCCGGAGGAGGGCAGACTAGGGATTTCCTTGGTGTTGGCGTGCAGACCATTTGCCATTCTTCACCAATCAATGGATATTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008356 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

479

Amino Acids

52.55

Weight (kDa)

8.88

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	101 - 135	7.7e-21	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	139 - 163	4.8e-15	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	166 - 205	1.7e-24	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03840 AT1G03840 AT5G44160 AT5G44160
fragaria_vesca	FvH4_6g26760 FvH4_6g26760 FvH4_6g26760
prunus_persica	Prupe.3G128100_v2.0.a1 Prupe.3G128100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c19g0500141 RchiOBHm_Chr0c19g0500151 RchiOBHm_Chr2g0128541
rosa_laevigata	RLG00000018991
rosa_multiflora	Rmu_sc0002162.1_g000007
rosa_roxburghii	Rroxscaffold_2G00115690 Rroxscaffold_2G00116120
rosa_rugosa	Rorug02G0277800
rosa_samantha	Rh2AG329200 Rh2BG338900 Rh2CG315900 Rh2DG355800
rosa_wichuraiana	Rw2G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	812
AccB7I	CCANNNNNTGG	1 cut(s)	1424
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	2 cut(s)	309, 449
AciI	CCGC	9 cut(s)	74, 247, 397, 442, 449, 513, 938, 1327, 1353
AclWI	GGATC	5 cut(s)	78, 91, 128, 811, 893
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	3 cut(s)	165, 597, 1071
AdeI	CACNNNGTG	1 cut(s)	533
AfaI	GTAC	4 cut(s)	78, 446, 500, 1070
AfiI	CCNNNNNNNGG	4 cut(s)	73, 355, 1362, 1424
AflIII	ACRYGT	2 cut(s)	315, 1152
AgsI	TTSAA	6 cut(s)	62, 888, 1146, 1183, 1232, 1238
AhlI	ACTAGT	2 cut(s)	1040, 1205
AjiI	CACGTC	1 cut(s)	1155
AjnI	CCWGG	2 cut(s)	121, 1282
AleI	CACNNNNGTG	1 cut(s)	249
Alw21I	GWGCWC	2 cut(s)	437, 1291
Alw26I	GTCTC	2 cut(s)	165, 219
AlwI	GGATC	5 cut(s)	78, 91, 128, 811, 893
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	177, 555, 796
ApeKI	GCWGC	3 cut(s)	241, 1046, 1124
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	3 cut(s)	309, 361, 1352
AspS9I	GGNCC	3 cut(s)	555, 686, 796
AsuC2I	CCSGG	2 cut(s)	323, 554
AsuHPI	GGTGA	3 cut(s)	842, 908, 1407
AvaII	GGWCC	1 cut(s)	686
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	1291
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
Bbv12I	GWGCWC	2 cut(s)	437, 1291
BbvI	GCAGC	3 cut(s)	228, 1033, 1136
BccI	CCATC	4 cut(s)	169, 787, 861, 1235
BceAI	ACGGC	4 cut(s)	234, 421, 545, 826
BciT130I	CCWGG	2 cut(s)	123, 1284
BciVI	GTATCC	1 cut(s)	613
BclI	TGATCA	2 cut(s)	946, 1294
BcnI	CCSGG	2 cut(s)	323, 554
BcoDI	GTCTC	2 cut(s)	165, 219
BcuI	ACTAGT	2 cut(s)	1040, 1205
BfaI	CTAG	8 cut(s)	354, 492, 588, 683, 1041, 1206, 1215, 1371
BfmI	CTRYAG	1 cut(s)	236
BfoI	RGCGCY	2 cut(s)	362, 1353
BfuI	GTATCC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	6 cut(s)	242, 397, 1047, 1125, 1327, 1353
BlsI	GCNGC	6 cut(s)	243, 398, 1048, 1126, 1328, 1354
Bme1390I	CCNGG	4 cut(s)	123, 323, 554, 1284
Bme18I	GGWCC	1 cut(s)	686
BmgBI	CACGTC	1 cut(s)	1155
BmgT120I	GGNCC	3 cut(s)	555, 686, 796
BmiI	GGNNCC	2 cut(s)	85, 814
BmrFI	CCNGG	4 cut(s)	123, 323, 554, 1284
BmrI	ACTGGG	2 cut(s)	62, 624
BmsI	GCATC	4 cut(s)	556, 677, 853, 1321
BmuI	ACTGGG	2 cut(s)	62, 624
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	721
Bpu10I	CCTNAGC	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	2 cut(s)	323, 554
BsaAI	YACGTR	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	8 cut(s)	121, 250, 266, 299, 775, 799, 1282, 1381
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 355, 1362, 1424
Bse1I	ACTGG	2 cut(s)	68, 630
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	2 cut(s)	630, 748
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	2 cut(s)	123, 1284
BseDI	CCNNGG	8 cut(s)	121, 250, 266, 299, 775, 799, 1282, 1381
BseGI	GGATG	2 cut(s)	609, 798
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	4 cut(s)	73, 355, 1362, 1424
BseMI	GCAATG	2 cut(s)	630, 748
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	68, 630
BseRI	GAGGAG	3 cut(s)	84, 924, 1374
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	3 cut(s)	228, 1033, 1136
BsgI	GTGCAG	4 cut(s)	227, 473, 1289, 1415
Bsh1236I	CGCG	2 cut(s)	309, 449
BshFI	GGCC	3 cut(s)	179, 557, 798
BshNI	GGYRCC	1 cut(s)	812
BsiHKAI	GWGCWC	2 cut(s)	437, 1291
BsiSI	CCGG	3 cut(s)	323, 553, 1356
BslI	CCNNNNNNNGG	4 cut(s)	73, 355, 1362, 1424
BsmAI	GTCTC	2 cut(s)	165, 219
BsnI	GGCC	3 cut(s)	179, 557, 798
Bso31I	GGTCTC	1 cut(s)	219
Bsp1286I	GDGCHC	3 cut(s)	323, 437, 1291
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	9 cut(s)	74, 247, 397, 442, 449, 513, 938, 1327, 1353
BspANI	GGCC	3 cut(s)	179, 557, 798
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	2 cut(s)	309, 449
BspHI	TCATGA	2 cut(s)	25, 1291
BspLI	GGNNCC	2 cut(s)	85, 814
BspPI	GGATC	5 cut(s)	78, 91, 128, 811, 893
BspT107I	GGYRCC	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	630, 748
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	2 cut(s)	68, 630
BssECI	CCNNGG	8 cut(s)	121, 250, 266, 299, 775, 799, 1282, 1381
BssMI	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
BssT1I	CCWWGG	3 cut(s)	266, 799, 1381
Bst2UI	CCWGG	2 cut(s)	123, 1284
Bst4CI	ACNGT	4 cut(s)	760, 779, 832, 1273
Bst6I	CTCTTC	2 cut(s)	104, 1338
BstAUI	TGTACA	1 cut(s)	1068
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	401, 1394
BstDEI	CTNAG	2 cut(s)	138, 571
BstDSI	CCRYGG	3 cut(s)	250, 266, 775
BstF5I	GGATG	2 cut(s)	609, 798
BstFNI	CGCG	2 cut(s)	309, 449
BstH2I	RGCGCY	2 cut(s)	362, 1353
BstHHI	GCGC	3 cut(s)	309, 361, 1352
BstKTI	GATC	9 cut(s)	15, 86, 136, 370, 806, 901, 949, 1021, 1297
BstMAI	GTCTC	2 cut(s)	165, 219
BstMBI	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
BstMWI	GCNNNNNNNGC	5 cut(s)	304, 405, 937, 1220, 1347
BstNI	CCWGG	2 cut(s)	123, 1284
BstNSI	RCATGY	2 cut(s)	700, 1312
BstSCI	CCNGG	4 cut(s)	121, 321, 552, 1282
BstSFI	CTRYAG	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	2 cut(s)	309, 449
BstV1I	GCAGC	3 cut(s)	228, 1033, 1136
BstX2I	RGATCY	3 cut(s)	83, 133, 367
BstXI	CCANNNNNNTGG	1 cut(s)	860
BstYI	RGATCY	3 cut(s)	83, 133, 367
Bsu36I	CCTNAGG	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	179, 557, 798
BtgI	CCRYGG	3 cut(s)	250, 266, 775
BtrI	CACGTC	1 cut(s)	1155
BtsCI	GGATG	2 cut(s)	609, 798
BtsI	GCAGTG	2 cut(s)	1160, 1230
BtsIMutI	CAGTG	3 cut(s)	1160, 1230, 1269
Cac8I	GCNNGC	2 cut(s)	401, 1394
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	2 cut(s)	25, 1291
CfoI	GCGC	3 cut(s)	309, 361, 1352
Cfr13I	GGNCC	3 cut(s)	555, 686, 796
CseI	GACGC	2 cut(s)	298, 325
Csp6I	GTAC	4 cut(s)	77, 445, 499, 1069
CspCI	CAANNNNNGTGG	2 cut(s)	1237, 1272
CviAII	CATG	6 cut(s)	26, 267, 655, 697, 1292, 1309
CviQI	GTAC	4 cut(s)	77, 445, 499, 1069
DdeI	CTNAG	2 cut(s)	138, 571
DpnI	GATC	9 cut(s)	14, 85, 135, 369, 805, 900, 948, 1020, 1296
DpnII	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
DraI	TTTAAA	1 cut(s)	727
DraIII	CACNNNGTG	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	104, 1338
EarI	CTCTTC	2 cut(s)	104, 1338
EciI	GGCGGA	1 cut(s)	927
Ecl136II	GAGCTC	1 cut(s)	1289
Eco130I	CCWWGG	3 cut(s)	266, 799, 1381
Eco24I	GRGCYC	1 cut(s)	1291
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	1289
Eco57I	CTGAAG	3 cut(s)	165, 597, 1071
Eco81I	CCTNAGG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	1289
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	121, 1282
EcoT14I	CCWWGG	3 cut(s)	266, 799, 1381
EcoT22I	ATGCAT	2 cut(s)	670, 1314
EcoT38I	GRGCYC	1 cut(s)	1291
ErhI	CCWWGG	3 cut(s)	266, 799, 1381
FaeI	CATG	6 cut(s)	29, 270, 658, 700, 1295, 1312
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	6 cut(s)	25, 266, 654, 696, 1291, 1308
FbaI	TGATCA	2 cut(s)	946, 1294
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	242, 397, 1047, 1125, 1327, 1353
FokI	GGATG	2 cut(s)	596, 805
FriOI	GRGCYC	1 cut(s)	1291
Fsp4HI	GCNGC	6 cut(s)	242, 397, 1047, 1125, 1327, 1353
FspBI	CTAG	8 cut(s)	354, 492, 588, 683, 1041, 1206, 1215, 1371
GlaI	GCGC	3 cut(s)	308, 360, 1351
GluI	GCNGC	6 cut(s)	242, 397, 1047, 1125, 1327, 1353
GsuI	CTGGAG	1 cut(s)	721
HaeII	RGCGCY	2 cut(s)	362, 1353
HaeIII	GGCC	3 cut(s)	179, 557, 798
HapII	CCGG	3 cut(s)	323, 553, 1356
HgaI	GACGC	2 cut(s)	298, 325
HhaI	GCGC	3 cut(s)	309, 361, 1352
Hin1II	CATG	6 cut(s)	29, 270, 658, 700, 1295, 1312
Hin6I	GCGC	3 cut(s)	307, 359, 1350
HinP1I	GCGC	3 cut(s)	307, 359, 1350
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	4 cut(s)	169, 189, 1228, 1260
HpaI	GTTAAC	1 cut(s)	1026
HpaII	CCGG	3 cut(s)	323, 553, 1356
HphI	GGTGA	3 cut(s)	842, 908, 1407
Hpy166II	GTNNAC	6 cut(s)	254, 313, 340, 1026, 1071, 1259
Hpy188I	TCNGA	8 cut(s)	174, 222, 365, 372, 460, 693, 928, 946
Hpy188III	TCNNGA	6 cut(s)	26, 62, 137, 1016, 1238, 1292
Hpy8I	GTNNAC	6 cut(s)	254, 313, 340, 1026, 1071, 1259
HpyAV	CCTTC	5 cut(s)	272, 568, 951, 1071, 1095
HpyCH4III	ACNGT	4 cut(s)	760, 779, 832, 1273
HpyCH4IV	ACGT	2 cut(s)	315, 1154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	304, 405, 937, 1220, 1347
HpyF3I	CTNAG	2 cut(s)	138, 571
HpySE526I	ACGT	2 cut(s)	315, 1154
Hsp92II	CATG	6 cut(s)	29, 270, 658, 700, 1295, 1312
HspAI	GCGC	3 cut(s)	307, 359, 1350
Ksp22I	TGATCA	2 cut(s)	946, 1294
KspAI	GTTAAC	1 cut(s)	1026
Kzo9I	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
LmnI	GCTCC	3 cut(s)	440, 1245, 1286
Lsp1109I	GCAGC	3 cut(s)	228, 1033, 1136
LweI	GCATC	4 cut(s)	556, 677, 853, 1321
MaeI	CTAG	8 cut(s)	354, 492, 588, 683, 1041, 1206, 1215, 1371
MaeII	ACGT	2 cut(s)	315, 1154
MaeIII	GTNAC	2 cut(s)	506, 672
MalI	GATC	9 cut(s)	14, 85, 135, 369, 805, 900, 948, 1020, 1296
MboI	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
MflI	RGATCY	3 cut(s)	83, 133, 367
MhlI	GDGCHC	3 cut(s)	323, 437, 1291
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	4 cut(s)	39, 710, 961, 1131
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	163, 1254
MmeI	TCCRAC	2 cut(s)	438, 630
Mox20I	TGGCCA	1 cut(s)	179
Mph1103I	ATGCAT	2 cut(s)	670, 1314
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	4 cut(s)	42, 726, 834, 1025
MslI	CAYNNNNRTG	2 cut(s)	249, 618
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	241, 881
MspI	CCGG	3 cut(s)	323, 553, 1356
MspR9I	CCNGG	4 cut(s)	123, 323, 554, 1284
MvaI	CCWGG	2 cut(s)	123, 1284
MvnI	CGCG	2 cut(s)	309, 449
MwoI	GCNNNNNNNGC	5 cut(s)	304, 405, 937, 1220, 1347
NciI	CCSGG	2 cut(s)	323, 554
NcoI	CCATGG	1 cut(s)	266
NdeII	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
NlaIII	CATG	6 cut(s)	29, 270, 658, 700, 1295, 1312
NlaIV	GGNNCC	2 cut(s)	85, 814
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	506, 672
NsiI	ATGCAT	2 cut(s)	670, 1314
NspI	RCATGY	2 cut(s)	700, 1312
OliI	CACNNNNGTG	1 cut(s)	249
PagI	TCATGA	2 cut(s)	25, 1291
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	189, 1228
PflMI	CCANNNNNTGG	1 cut(s)	1424
PkrI	GCNGC	6 cut(s)	243, 398, 1048, 1126, 1328, 1354
PleI	GAGTC	2 cut(s)	163, 1254
PpsI	GAGTC	2 cut(s)	163, 1254
Ppu21I	YACGTR	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	686
Psp124BI	GAGCTC	1 cut(s)	1291
Psp5II	RGGWCCY	1 cut(s)	686
Psp6I	CCWGG	2 cut(s)	121, 1282
PspGI	CCWGG	2 cut(s)	121, 1282
PspN4I	GGNNCC	2 cut(s)	85, 814
PspPI	GGNCC	3 cut(s)	555, 686, 796
PspPPI	RGGWCCY	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	3 cut(s)	83, 133, 367
PvuII	CAGCTG	2 cut(s)	241, 881
RsaI	GTAC	4 cut(s)	78, 446, 500, 1070
RsaNI	GTAC	4 cut(s)	77, 445, 499, 1069
RseI	CAYNNNNRTG	2 cut(s)	249, 618
SacI	GAGCTC	1 cut(s)	1291
SaqAI	TTAA	4 cut(s)	42, 726, 834, 1025
SatI	GCNGC	6 cut(s)	242, 397, 1047, 1125, 1327, 1353
Sau3AI	GATC	9 cut(s)	12, 83, 133, 367, 803, 898, 946, 1018, 1294
Sau96I	GGNCC	3 cut(s)	555, 686, 796
SchI	GAGTC	2 cut(s)	163, 1254
ScrFI	CCNGG	4 cut(s)	123, 323, 554, 1284
SduI	GDGCHC	3 cut(s)	323, 437, 1291
SfaNI	GCATC	4 cut(s)	556, 677, 853, 1321
SfcI	CTRYAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	249, 618
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SpeI	ACTAGT	2 cut(s)	1040, 1205
Sse9I	AATT	4 cut(s)	39, 710, 961, 1131
SsiI	CCGC	9 cut(s)	74, 247, 397, 442, 449, 513, 938, 1327, 1353
SspI	AATATT	2 cut(s)	891, 1201
SspMI	CTAG	8 cut(s)	354, 492, 588, 683, 1041, 1206, 1215, 1371
SstI	GAGCTC	1 cut(s)	1291
StyD4I	CCNGG	4 cut(s)	121, 321, 552, 1282
StyI	CCWWGG	3 cut(s)	266, 799, 1381
TaaI	ACNGT	4 cut(s)	760, 779, 832, 1273
TaiI	ACGT	2 cut(s)	318, 1157
TaqI	TCGA	2 cut(s)	806, 998
TasI	AATT	4 cut(s)	39, 710, 961, 1131
TatI	WGTACW	2 cut(s)	498, 1068
TauI	GCSGC	3 cut(s)	399, 1329, 1355
TfiI	GAWTC	2 cut(s)	189, 1228
Tru1I	TTAA	4 cut(s)	42, 726, 834, 1025
Tru9I	TTAA	4 cut(s)	42, 726, 834, 1025
TscAI	CASTG	3 cut(s)	1167, 1230, 1276
TseFI	GTSAC	2 cut(s)	506, 672
TseI	GCWGC	3 cut(s)	241, 1046, 1124
Tsp45I	GTSAC	2 cut(s)	506, 672
TspDTI	ATGAA	3 cut(s)	42, 532, 864
TspRI	CASTG	3 cut(s)	1167, 1230, 1276
Van91I	CCANNNNNTGG	1 cut(s)	1424
VpaK11BI	GGWCC	1 cut(s)	686
XceI	RCATGY	2 cut(s)	700, 1312
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	8 cut(s)	354, 492, 588, 683, 1041, 1206, 1215, 1371
Zsp2I	ATGCAT	2 cut(s)	670, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.