Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0008927

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTATCCTGAGGCTGAAGTAATAGCCTTGTCTCCAAAGACTCTGATGGCCACCAACAGATTCTTGTGTGAAATATGTGGTAAGGGATTTCAGAGAGACCAAAACCTACAGCTGCACCGCCGTGGACACAACCTTCCATGGAAGCTCAAGCAAAGAACAAGCAAAGAGCCGAGGAAGCGCGTCTACGTGTGCCCGGAAAAGAGTTGCGTCCACCACCACCCGTCTAGGGCGCTCGGAGATCTGACCGGAATAAAGAAGCACTTCTGCCGCAAGCATGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGCGGTACGCGGTGCAGTCGGATTGGAAAGCTCACTCAAAGACCTGTGGCACTAGGGAGTACAAATGTGACTGCGGAACTCTATTTTCACGGCGTGATAGCTTCATCACACACCGGGCCTTCTGTGATGCCTTAGCTGAAGAAACAGCTAGAGTAAATGCAGTATCCAACATCCACAACAATGCAATGCCCAGTAATATCAACTATCATCACTACATGGGAAATAATGCATCTTCACTACTACTAGGACCTCCGAACATGCCCCAACTACAATTTTCTTCTATTTTTAAACCAATCTCCAGCAATGATACCCCTGACACCGTGAGCCAAAATACCCGCGGTCTATCTCTTTGGATGGGACAGGGATCCAACAGCACCCACGAAGAAATGACTGTTAATAATCAGCATCATCACCATCAACTTGGGTCTGTGAGTTCATCAGCTGGTTCAATATTTGGTGATCCTAATAACATTAGTGTTTCGTGTTCAGTGCCTCCTCCGCCTTCTGATCATTATCAACTGAATTGGGTCTTGGAAGTAATAACAAGCTTTCTACATCAAACAATGCTCATCATCAAGATCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008356 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

298

Amino Acids

33.72

Weight (kDa)

9.27

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	58 - 92	4.1e-21	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	96 - 120	2.6e-15	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	123 - 162	8.7e-25	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03840 AT1G03840 AT5G44160 AT5G44160
fragaria_vesca	FvH4_6g26760 FvH4_6g26760 FvH4_6g26760
prunus_persica	Prupe.3G128100_v2.0.a1 Prupe.3G128100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c19g0500141 RchiOBHm_Chr0c19g0500151 RchiOBHm_Chr2g0128541
rosa_laevigata	RLG00000018991
rosa_multiflora	Rmu_sc0002162.1_g000007
rosa_roxburghii	Rroxscaffold_2G00115690 Rroxscaffold_2G00116120
rosa_rugosa	Rorug02G0277800
rosa_samantha	Rh2AG329200 Rh2BG338900 Rh2CG315900 Rh2DG355800
rosa_wichuraiana	Rw2G026680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	3 cut(s)	180, 320, 648
AciI	CCGC	8 cut(s)	118, 268, 313, 320, 384, 646, 648, 809
AclWI	GGATC	3 cut(s)	669, 682, 764
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	36, 468
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	317, 371
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	759
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	8 cut(s)	112, 145, 341, 411, 446, 458, 752, 858
AluI	AGCT	8 cut(s)	112, 145, 341, 411, 446, 458, 752, 858
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	36, 90
AlwI	GGATC	3 cut(s)	669, 682, 764
AoxI	GGCC	2 cut(s)	48, 426
ApeKI	GCWGC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	180, 232
AspS9I	GGNCC	2 cut(s)	426, 557
AsuC2I	CCSGG	2 cut(s)	194, 425
AsuHPI	GGTGA	2 cut(s)	713, 779
AvaII	GGWCC	1 cut(s)	557
AxyI	CCTNAGG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	3 cut(s)	40, 658, 732
BceAI	ACGGC	2 cut(s)	105, 416
BciVI	GTATCC	2 cut(s)	15, 484
BclI	TGATCA	1 cut(s)	817
BcnI	CCSGG	2 cut(s)	194, 425
BcoDI	GTCTC	2 cut(s)	36, 90
BfaI	CTAG	4 cut(s)	225, 363, 459, 554
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	233
BfuI	GTATCC	2 cut(s)	15, 484
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	2 cut(s)	113, 268
BlsI	GCNGC	2 cut(s)	114, 269
Bme1390I	CCNGG	2 cut(s)	194, 425
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	426, 557
BmiI	GGNNCC	1 cut(s)	676
BmrFI	CCNGG	2 cut(s)	194, 425
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	3 cut(s)	427, 548, 724
BmuI	ACTGGG	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	592
Bpu10I	CCTNAGC	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	194, 425
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	822
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	121, 137, 170, 646
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	501
Bse21I	CCTNAGG	1 cut(s)	9
Bse3DI	GCAATG	2 cut(s)	501, 619
Bse8I	GATNNNNATC	1 cut(s)	822
BseDI	CCNNGG	4 cut(s)	121, 137, 170, 646
BseGI	GGATG	2 cut(s)	480, 669
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	2 cut(s)	501, 619
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	1 cut(s)	795
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	99
BsgI	GTGCAG	2 cut(s)	98, 344
Bsh1236I	CGCG	3 cut(s)	180, 320, 648
BshFI	GGCC	2 cut(s)	50, 428
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	194, 246, 424
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	36, 90
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	50, 428
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	194, 308
Bsp143I	GATC	5 cut(s)	238, 674, 769, 817, 888
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	8 cut(s)	118, 268, 313, 320, 384, 646, 648, 809
BspANI	GGCC	2 cut(s)	50, 428
BspFNI	CGCG	3 cut(s)	180, 320, 648
BspLI	GGNNCC	1 cut(s)	676
BspPI	GGATC	3 cut(s)	669, 682, 764
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	501, 619
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	4 cut(s)	121, 137, 170, 646
BssMI	GATC	5 cut(s)	238, 674, 769, 817, 888
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	631, 703
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	9, 442
BstDSI	CCRYGG	3 cut(s)	121, 137, 646
BstF5I	GGATG	2 cut(s)	480, 669
BstFNI	CGCG	3 cut(s)	180, 320, 648
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	2 cut(s)	180, 232
BstKTI	GATC	5 cut(s)	241, 677, 772, 820, 891
BstMAI	GTCTC	2 cut(s)	36, 90
BstMBI	GATC	5 cut(s)	238, 674, 769, 817, 888
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 276, 808
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	192, 423
BstSFI	CTRYAG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	3 cut(s)	180, 320, 648
BstV1I	GCAGC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	238, 674
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstYI	RGATCY	2 cut(s)	238, 674
Bsu36I	CCTNAGG	1 cut(s)	9
BsuI	GTATCC	2 cut(s)	15, 484
BsuRI	GGCC	2 cut(s)	50, 428
BtgI	CCRYGG	3 cut(s)	121, 137, 646
BtsCI	GGATG	2 cut(s)	480, 669
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	2 cut(s)	180, 232
Cfr13I	GGNCC	2 cut(s)	426, 557
Cfr42I	CCGCGG	1 cut(s)	649
CseI	GACGC	2 cut(s)	169, 196
Csp6I	GTAC	2 cut(s)	316, 370
CviAII	CATG	4 cut(s)	138, 275, 526, 568
CviQI	GTAC	2 cut(s)	316, 370
DdeI	CTNAG	2 cut(s)	9, 442
DpnI	GATC	5 cut(s)	240, 676, 771, 819, 890
DpnII	GATC	5 cut(s)	238, 674, 769, 817, 888
DraI	TTTAAA	1 cut(s)	598
DraIII	CACNNNGTG	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	2 cut(s)	36, 468
Eco81I	CCTNAGG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	4 cut(s)	141, 278, 529, 571
FaiI	YATR	5 cut(s)	76, 139, 276, 527, 569
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	4 cut(s)	137, 274, 525, 567
FauI	CCCGC	1 cut(s)	653
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	113, 268
FokI	GGATG	2 cut(s)	467, 676
Fsp4HI	GCNGC	2 cut(s)	113, 268
FspBI	CTAG	4 cut(s)	225, 363, 459, 554
GlaI	GCGC	2 cut(s)	179, 231
GluI	GCNGC	2 cut(s)	113, 268
GsuI	CTGGAG	1 cut(s)	592
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	50, 428
HapII	CCGG	3 cut(s)	194, 246, 424
HgaI	GACGC	2 cut(s)	169, 196
HhaI	GCGC	2 cut(s)	180, 232
Hin1II	CATG	4 cut(s)	141, 278, 529, 571
Hin6I	GCGC	2 cut(s)	178, 230
HinP1I	GCGC	2 cut(s)	178, 230
HindIII	AAGCTT	1 cut(s)	856
HinfI	GANTC	2 cut(s)	40, 60
HpaII	CCGG	3 cut(s)	194, 246, 424
HphI	GGTGA	2 cut(s)	713, 779
Hpy166II	GTNNAC	3 cut(s)	125, 184, 211
Hpy188I	TCNGA	7 cut(s)	45, 93, 236, 243, 331, 564, 817
Hpy188III	TCNNGA	2 cut(s)	8, 886
Hpy8I	GTNNAC	3 cut(s)	125, 184, 211
HpyAV	CCTTC	3 cut(s)	143, 439, 822
HpyCH4III	ACNGT	2 cut(s)	631, 703
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	5 cut(s)	115, 325, 470, 494, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 276, 808
HpyF3I	CTNAG	2 cut(s)	9, 442
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	141, 278, 529, 571
HspAI	GCGC	2 cut(s)	178, 230
Ksp22I	TGATCA	1 cut(s)	817
KspI	CCGCGG	1 cut(s)	649
Kzo9I	GATC	5 cut(s)	238, 674, 769, 817, 888
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	3 cut(s)	427, 548, 724
MaeI	CTAG	4 cut(s)	225, 363, 459, 554
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	5 cut(s)	240, 676, 771, 819, 890
MboI	GATC	5 cut(s)	238, 674, 769, 817, 888
MboII	GAAGA	5 cut(s)	295, 461, 534, 579, 704
MflI	RGATCY	2 cut(s)	238, 674
MhlI	GDGCHC	2 cut(s)	194, 308
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	581, 832
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	3 cut(s)	309, 501, 702
MnlI	CCTC	5 cut(s)	4, 165, 570, 813, 816
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	3 cut(s)	597, 705, 895
MslI	CAYNNNNRTG	2 cut(s)	120, 489
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	3 cut(s)	112, 648, 752
MspI	CCGG	3 cut(s)	194, 246, 424
MspR9I	CCNGG	2 cut(s)	194, 425
MvnI	CGCG	3 cut(s)	180, 320, 648
MwoI	GCNNNNNNNGC	3 cut(s)	175, 276, 808
NciI	CCSGG	2 cut(s)	194, 425
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	5 cut(s)	238, 674, 769, 817, 888
NlaIII	CATG	4 cut(s)	141, 278, 529, 571
NlaIV	GGNNCC	1 cut(s)	676
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	1 cut(s)	571
OliI	CACNNNNGTG	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	114, 269
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	2 cut(s)	426, 557
PspPPI	RGGWCCY	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	238, 674
PvuII	CAGCTG	2 cut(s)	112, 752
RsaI	GTAC	2 cut(s)	317, 371
RsaNI	GTAC	2 cut(s)	316, 370
RseI	CAYNNNNRTG	2 cut(s)	120, 489
SacII	CCGCGG	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	597, 705, 895
SatI	GCNGC	2 cut(s)	113, 268
Sau3AI	GATC	5 cut(s)	238, 674, 769, 817, 888
Sau96I	GGNCC	2 cut(s)	426, 557
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	194, 425
SduI	GDGCHC	2 cut(s)	194, 308
SfaNI	GCATC	3 cut(s)	427, 548, 724
SfcI	CTRYAG	1 cut(s)	107
Sfr303I	CCGCGG	1 cut(s)	649
SgrBI	CCGCGG	1 cut(s)	649
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	120, 489
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	581, 832
SsiI	CCGC	8 cut(s)	118, 268, 313, 320, 384, 646, 648, 809
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	4 cut(s)	225, 363, 459, 554
StyD4I	CCNGG	2 cut(s)	192, 423
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	631, 703
TaiI	ACGT	1 cut(s)	189
TasI	AATT	2 cut(s)	581, 832
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	3 cut(s)	597, 705, 895
Tru9I	TTAA	3 cut(s)	597, 705, 895
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	403, 735
TspRI	CASTG	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	557
XceI	RCATGY	1 cut(s)	571
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	4 cut(s)	225, 363, 459, 554
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.