RchiOBHm_Chr1g0314091
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019841
Physical Location & Seq
Reverse (-)
1369347 .. 1370552
1206 bp
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UTR
Exon/CDS
Intron
PRQ54477

Sequence Viewer

Length: 459 bp
ATGGGCAGTGAGCCTGACAAAGAAATCCTAAAAATGGTAGCAAGGACAACTGTGCGAACAAAGGTTCTTTGCAACCACATACCTGAGGAGGCAATTGATCTGTTTATGGTGGAGATTATGCACATGCGCCATAAATTTGGTGCAGATACACGTTTGATTATTGCTCTGAGAAGAGCAAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCAGTGAACTCTGTAGATGATTTAACTCCTGATTGCCTTGGCTGGGCTGGACTTGTATATGAGCACGTCCTTGGTGAAGAGAAGTACACATTTGTCGAAAATGTGAAGAACCCTCATTCTTGCACAATCTTAATCAAAGGTATTCAGTCAGTAGCTCCATGCAAATTGCAAAGTTCTATATACAATTTTGTTCTCTATCCATGTCTCGATATATATCTTGCATCCCTGTCATGGTAA

Protein Analysis

152

Amino Acids

17.22

Weight (kDa)

6.95

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 52 - 126 3.4e-22 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019841)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314091
rosa_multiflora Rmu_sc0013705.1_g000001
rosa_samantha Rh1AG008600 Rh2AG481300 Rh2CG467700 Rh3CG365700 Rh6AG127200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 34, 265, 453
AflIII ACRYGT 1 cut(s) 149
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 289
BmsI GCATC 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 259, 292
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 265, 453
Bse21I CCTNAGG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 259, 292
BseGI GGATG 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 3 cut(s) 34, 265, 453
BseMII CTCAG 2 cut(s) 75, 158
BseRI GAGGAG 2 cut(s) 101, 196
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 288
BslI CCNNNNNNNGG 3 cut(s) 34, 265, 453
BsmAI GTCTC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 76, 159
BspQI GCTCTTC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 259, 292
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 2 cut(s) 259, 292
Bst4CI ACNGT 2 cut(s) 52, 198
Bst6I CTCTTC 2 cut(s) 166, 294
BstDEI CTNAG 2 cut(s) 84, 167
BstF5I GGATG 1 cut(s) 443
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 137
Bsu36I CCTNAGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 2 cut(s) 13, 231
BtsIMutI CAGTG 2 cut(s) 13, 231
CfoI GCGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 307
CviAII CATG 4 cut(s) 124, 381, 423, 453
CviJI RGCY 5 cut(s) 13, 209, 264, 269, 377
CviKI_1 RGCY 5 cut(s) 13, 209, 264, 269, 377
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 84, 167
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 166, 294
EarI CTCTTC 2 cut(s) 166, 294
Eco130I CCWWGG 2 cut(s) 259, 292
Eco81I CCTNAGG 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 259, 292
ErhI CCWWGG 2 cut(s) 259, 292
FaeI CATG 4 cut(s) 127, 384, 426, 456
FatI CATG 4 cut(s) 123, 380, 422, 452
FokI GGATG 1 cut(s) 430
GlaI GCGC 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 129
Hin1II CATG 4 cut(s) 127, 384, 426, 456
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 229, 309
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 251, 428
Hpy8I GTNNAC 2 cut(s) 229, 309
HpyCH4III ACNGT 2 cut(s) 52, 198
HpyCH4IV ACGT 2 cut(s) 151, 288
HpyCH4V TGCA 7 cut(s) 72, 121, 143, 345, 384, 391, 443
HpyF3I CTNAG 2 cut(s) 84, 167
HpySE526I ACGT 2 cut(s) 151, 288
Hsp92II CATG 4 cut(s) 127, 384, 426, 456
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 97
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 5 cut(s) 27, 96, 250, 255, 264
LweI GCATC 1 cut(s) 452
MaeII ACGT 2 cut(s) 151, 288
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 183, 311, 340
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 4 cut(s) 93, 134, 386, 406
MnlI CCTC 6 cut(s) 79, 82, 174, 209, 214, 345
MseI TTAA 2 cut(s) 245, 353
MunI CAATTG 1 cut(s) 93
NdeII GATC 1 cut(s) 97
NlaIII CATG 4 cut(s) 127, 384, 426, 456
NspI RCATGY 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 264
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 245, 353
Sau3AI GATC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 66, 85, 154, 291, 364, 379
SfaNI GCATC 1 cut(s) 452
SfcI CTRYAG 1 cut(s) 234
Sse9I AATT 4 cut(s) 93, 134, 386, 406
StyI CCWWGG 2 cut(s) 259, 292
TaaI ACNGT 2 cut(s) 52, 198
TaiI ACGT 2 cut(s) 154, 291
TaqI TCGA 2 cut(s) 318, 429
TasI AATT 4 cut(s) 93, 134, 386, 406
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 2 cut(s) 245, 353
Tru9I TTAA 2 cut(s) 245, 353
TscAI CASTG 2 cut(s) 13, 231
TspRI CASTG 2 cut(s) 13, 231
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.