Rh2AG481300
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019841
Physical Location & Seq
Forward (+)
70146993 .. 70158149
11157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG481300.1

Sequence Viewer

Length: 1059 bp
ATGTTCGATTCTGCATCTGCAACCGGAGAGCGTCTCTCTCGCCATTGCCAAACCGGCTCACAAGCAAATTCGAAAGTCCAGAGAGCTTCATCTACGCCTGAAGAGTTGAGATCTTATCAAGGACGATCGATTCAGCTCTTGCAGGATCCGAAGCACCATACCAATTCAAAGGTTGAGGGTCTTGTCCTTGATCATGGTTCTAGGCATCTTGATATGAAGCGACGAGCAGAGAATTGTTACATCTTGACAGCCAATGTATCTCTGAAGTACGAGAAAAGTCGTCAGGTTGACGAGAGAGTTAGAAAGATTATTGAGCTGAAAAATAAGGTTTGTTCTGGTAATGACAATAATTTTGTCGTTATCAATCAGAAGGGAATTGATCCCCCATCTCTGGACCTTCTGGCAAGGGCAGGGATTATTGCTCTGAGAAGAGCAAAGAGGAGAAATATGGAACGGTTGGTTTTGGCTTGTGGAGGGGAGGCAGTGAACTCTGTAGATGATTTAACTCCTGATTGCCTTGGCTGGGCTGGACTTGTATATGAGCACGTCCTTGGTGAAGAGAAGTACACATTTGTCGAAAATGTGAACAACCCTCATTCTTGCACAATCTTAATCAAAGGTATTCAGTCAGTAGCTCCATGCAAATTGCAAAGTTCTATATACAATTTTGTTCTCTATCCATGTCTCGATATATATCTTGCATCCCTGTCATGTACTGGACCAAACCATCAAATCATTTCCACATTCATTGGAGGAGAAGTTGGCAAACCCGATCCGAACCCAAATGTATATGGTCGTCTCTCTCTATTTCTTACCCAACCCGAACCCAATCCAAATCCCAAATCCTCTCCACCCGCGACTCCCTCCTCTCCCACCAAATCACAGCCGCCGAGCTCGCCGAGTCCTTCCTCTCCCGCCTCCGCCGCACCCAGCCCCACCTCCGCTCCTTCTTCCACGTCTCCGACGCAGTCCTCGCCCAGGCCAGCGACCTCGATGACAGGCTTCGCCGGAATGAGGAGATGGGACCTTGGCCGGGGTCCTTATAGCGGTGAAGGATAA

Protein Analysis

352

Amino Acids

38.17

Weight (kDa)

9.0

Isoelectric Point (pI)

60.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 55 - 212 1.7e-39 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019841)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314091
rosa_multiflora Rmu_sc0013705.1_g000001
rosa_samantha Rh1AG008600 Rh2AG481300 Rh2CG467700 Rh3CG365700 Rh6AG127200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 944
AccII CGCG 1 cut(s) 857
AciI CCGC 7 cut(s) 855, 887, 915, 921, 924, 942, 1047
AclWI GGATC 4 cut(s) 140, 153, 374, 767
AcoI YGGCCR 1 cut(s) 1030
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 2 cut(s) 120, 284
AfaI GTAC 3 cut(s) 269, 566, 715
AfiI CCNNNNNNNGG 6 cut(s) 391, 523, 978, 1014, 1033, 1046
AgsI TTSAA 1 cut(s) 168
AjiI CACGTC 2 cut(s) 547, 957
AjnI CCWGG 1 cut(s) 977
AluBI AGCT 5 cut(s) 86, 136, 316, 635, 894
AluI AGCT 5 cut(s) 86, 136, 316, 635, 894
Alw21I GWGCWC 2 cut(s) 546, 896
Alw26I GTCTC 4 cut(s) 38, 689, 803, 963
AlwI GGATC 4 cut(s) 140, 153, 374, 767
AoxI GGCC 2 cut(s) 980, 1030
ApoI RAATTY 1 cut(s) 67
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspS9I GGNCC 4 cut(s) 394, 719, 1024, 1037
AsuC2I CCSGG 1 cut(s) 1034
AsuHPI GGTGA 1 cut(s) 566
AsuII TTCGAA 1 cut(s) 71
AvaII GGWCC 4 cut(s) 394, 719, 1024, 1037
BamHI GGATCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 896
Bbv12I GWGCWC 2 cut(s) 546, 896
BccI CCATC 3 cut(s) 394, 735, 1014
BciT130I CCWGG 1 cut(s) 979
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 1 cut(s) 1034
BcoDI GTCTC 4 cut(s) 38, 689, 803, 963
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 492
BglI GCCNNNNNGGC 1 cut(s) 54
BglII AGATCT 1 cut(s) 110
BisI GCNGC 2 cut(s) 887, 924
BlsI GCNGC 2 cut(s) 888, 925
Bme1390I CCNGG 2 cut(s) 979, 1034
Bme18I GGWCC 4 cut(s) 394, 719, 1024, 1037
BmgBI CACGTC 2 cut(s) 547, 957
BmgT120I GGNCC 4 cut(s) 394, 719, 1024, 1037
BmiI GGNNCC 3 cut(s) 147, 1025, 1038
BmrFI CCNGG 2 cut(s) 979, 1034
BmsI GCATC 3 cut(s) 23, 214, 710
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 20, 52
Bpu14I TTCGAA 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 1034
Bsa29I ATCGAT 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 5 cut(s) 517, 550, 977, 1027, 1033
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 4 cut(s) 744, 774, 928, 958
Bsc4I CCNNNNNNNGG 6 cut(s) 391, 523, 978, 1014, 1033, 1046
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 721
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 979
BseCI ATCGAT 1 cut(s) 128
BseDI CCNNGG 5 cut(s) 517, 550, 977, 1027, 1033
BseGI GGATG 1 cut(s) 701
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 6 cut(s) 391, 523, 978, 1014, 1033, 1046
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 721
BseRI GAGGAG 4 cut(s) 454, 768, 856, 1030
BseYI CCCAGC 2 cut(s) 522, 929
Bsh1236I CGCG 1 cut(s) 857
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 982, 1032
BshVI ATCGAT 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 546, 896
BsiSI CCGG 4 cut(s) 24, 54, 1008, 1033
BslFI GGGAC 1 cut(s) 1037
BslI CCNNNNNNNGG 6 cut(s) 391, 523, 978, 1014, 1033, 1046
BsmAI GTCTC 4 cut(s) 38, 689, 803, 963
BsmBI CGTCTC 3 cut(s) 38, 803, 963
BsmFI GGGAC 1 cut(s) 1037
BsnI GGCC 2 cut(s) 982, 1032
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 546, 896
Bsp143I GATC 6 cut(s) 110, 125, 145, 190, 379, 772
BspACI CCGC 7 cut(s) 855, 887, 915, 921, 924, 942, 1047
BspANI GGCC 2 cut(s) 982, 1032
BspCNI CTCAG 1 cut(s) 417
BspDI ATCGAT 1 cut(s) 128
BspFNI CGCG 1 cut(s) 857
BspLI GGNNCC 3 cut(s) 147, 1025, 1038
BspPI GGATC 4 cut(s) 140, 153, 374, 767
BspQI GCTCTTC 1 cut(s) 424
BspT104I TTCGAA 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 721
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 5 cut(s) 517, 550, 977, 1027, 1033
BssMI GATC 6 cut(s) 110, 125, 145, 190, 379, 772
BssT1I CCWWGG 3 cut(s) 517, 550, 1027
Bst2UI CCWGG 1 cut(s) 979
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 3 cut(s) 96, 424, 552
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 896, 984
BstDEI CTNAG 1 cut(s) 425
BstENI CCTNNNNNAGG 1 cut(s) 976
BstF5I GGATG 1 cut(s) 701
BstFNI CGCG 1 cut(s) 857
BstKTI GATC 6 cut(s) 113, 128, 148, 193, 382, 775
BstMAI GTCTC 4 cut(s) 38, 689, 803, 963
BstMBI GATC 6 cut(s) 110, 125, 145, 190, 379, 772
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 4 cut(s) 54, 895, 923, 973
BstNI CCWGG 1 cut(s) 979
BstSCI CCNGG 2 cut(s) 977, 1032
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 1 cut(s) 857
BstX2I RGATCY 2 cut(s) 110, 145
BstYI RGATCY 2 cut(s) 110, 145
Bsu15I ATCGAT 1 cut(s) 128
BsuRI GGCC 2 cut(s) 982, 1032
BsuTUI ATCGAT 1 cut(s) 128
BtrI CACGTC 2 cut(s) 547, 957
BtsCI GGATG 1 cut(s) 701
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 2 cut(s) 896, 984
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 394, 719, 1024, 1037
ClaI ATCGAT 1 cut(s) 128
CseI GACGC 2 cut(s) 20, 973
Csp6I GTAC 3 cut(s) 268, 565, 714
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 4 cut(s) 194, 639, 681, 711
CviQI GTAC 3 cut(s) 268, 565, 714
DdeI CTNAG 1 cut(s) 425
DpnI GATC 6 cut(s) 112, 127, 147, 192, 381, 774
DpnII GATC 6 cut(s) 110, 125, 145, 190, 379, 772
EaeI YGGCCR 1 cut(s) 1030
Eam1104I CTCTTC 3 cut(s) 96, 424, 552
EarI CTCTTC 3 cut(s) 96, 424, 552
EciI GGCGGA 1 cut(s) 910
Ecl136II GAGCTC 1 cut(s) 894
Eco130I CCWWGG 3 cut(s) 517, 550, 1027
Eco24I GRGCYC 1 cut(s) 896
Eco47I GGWCC 4 cut(s) 394, 719, 1024, 1037
Eco53kI GAGCTC 1 cut(s) 894
Eco57I CTGAAG 2 cut(s) 120, 284
EcoICRI GAGCTC 1 cut(s) 894
EcoNI CCTNNNNNAGG 1 cut(s) 976
EcoO109I RGGNCCY 2 cut(s) 1024, 1037
EcoRII CCWGG 1 cut(s) 977
EcoT14I CCWWGG 3 cut(s) 517, 550, 1027
EcoT38I GRGCYC 1 cut(s) 896
ErhI CCWWGG 3 cut(s) 517, 550, 1027
Esp3I CGTCTC 3 cut(s) 38, 803, 963
FaeI CATG 4 cut(s) 197, 642, 684, 714
FaqI GGGAC 1 cut(s) 1037
FatI CATG 4 cut(s) 193, 638, 680, 710
FauI CCCGC 2 cut(s) 862, 922
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 887, 924
FokI GGATG 1 cut(s) 688
FriOI GRGCYC 1 cut(s) 896
Fsp4HI GCNGC 2 cut(s) 887, 924
FspBI CTAG 1 cut(s) 201
GluI GCNGC 2 cut(s) 887, 924
GsaI CCCAGC 2 cut(s) 526, 933
HaeIII GGCC 2 cut(s) 982, 1032
HapII CCGG 4 cut(s) 24, 54, 1008, 1033
HgaI GACGC 2 cut(s) 20, 973
Hin1II CATG 4 cut(s) 197, 642, 684, 714
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 4 cut(s) 8, 130, 859, 901
HpaII CCGG 4 cut(s) 24, 54, 1008, 1033
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 4 cut(s) 289, 487, 567, 586
Hpy188I TCNGA 6 cut(s) 150, 264, 369, 426, 777, 963
Hpy188III TCNNGA 6 cut(s) 79, 209, 244, 392, 509, 686
Hpy8I GTNNAC 4 cut(s) 289, 487, 567, 586
Hpy99I CGWCG 2 cut(s) 225, 967
HpyAV CCTTC 5 cut(s) 364, 407, 915, 957, 1046
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 2 cut(s) 546, 956
HpyCH4V TGCA 7 cut(s) 14, 20, 142, 603, 642, 649, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 895, 923, 973
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 2 cut(s) 546, 956
Hsp92II CATG 4 cut(s) 197, 642, 684, 714
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 6 cut(s) 110, 125, 145, 190, 379, 772
LguI GCTCTTC 1 cut(s) 424
LmnI GCTCC 2 cut(s) 640, 949
LweI GCATC 3 cut(s) 23, 214, 710
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 546, 956
MaeIII GTNAC 1 cut(s) 236
MalI GATC 6 cut(s) 112, 127, 147, 192, 381, 774
MbiI CCGCTC 1 cut(s) 944
MboI GATC 6 cut(s) 110, 125, 145, 190, 379, 772
MboII GAAGA 4 cut(s) 113, 441, 569, 942
MflI RGATCY 2 cut(s) 110, 145
MhlI GDGCHC 2 cut(s) 546, 896
MluCI AATT 7 cut(s) 67, 163, 232, 349, 375, 644, 664
MlyI GAGTC 2 cut(s) 853, 910
MmeI TCCRAC 1 cut(s) 986
MseI TTAA 2 cut(s) 503, 611
MspI CCGG 4 cut(s) 24, 54, 1008, 1033
MspR9I CCNGG 2 cut(s) 979, 1034
MvaI CCWGG 1 cut(s) 979
MvnI CGCG 1 cut(s) 857
MwoI GCNNNNNNNGC 4 cut(s) 54, 895, 923, 973
NciI CCSGG 1 cut(s) 1034
NdeII GATC 6 cut(s) 110, 125, 145, 190, 379, 772
NlaIII CATG 4 cut(s) 197, 642, 684, 714
NlaIV GGNNCC 3 cut(s) 147, 1025, 1038
NmeAIII GCCGAG 2 cut(s) 915, 924
NspV TTCGAA 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 8, 130
PflFI GACNNNGTC 1 cut(s) 967
PkrI GCNGC 2 cut(s) 888, 925
Ple19I CGATCG 1 cut(s) 128
PleI GAGTC 2 cut(s) 853, 909
PpsI GAGTC 2 cut(s) 853, 909
PpuMI RGGWCCY 2 cut(s) 1024, 1037
Psp124BI GAGCTC 1 cut(s) 896
Psp5II RGGWCCY 2 cut(s) 1024, 1037
Psp6I CCWGG 1 cut(s) 977
PspFI CCCAGC 2 cut(s) 522, 929
PspGI CCWGG 1 cut(s) 977
PspN4I GGNNCC 3 cut(s) 147, 1025, 1038
PspPI GGNCC 4 cut(s) 394, 719, 1024, 1037
PspPPI RGGWCCY 2 cut(s) 1024, 1037
PsuI RGATCY 2 cut(s) 110, 145
PsyI GACNNNGTC 1 cut(s) 967
PvuI CGATCG 1 cut(s) 128
RsaI GTAC 3 cut(s) 269, 566, 715
RsaNI GTAC 3 cut(s) 268, 565, 714
SacI GAGCTC 1 cut(s) 896
SapI GCTCTTC 1 cut(s) 424
SaqAI TTAA 2 cut(s) 503, 611
SatI GCNGC 2 cut(s) 887, 924
Sau3AI GATC 6 cut(s) 110, 125, 145, 190, 379, 772
Sau96I GGNCC 4 cut(s) 394, 719, 1024, 1037
SchI GAGTC 2 cut(s) 853, 910
ScrFI CCNGG 2 cut(s) 979, 1034
SduI GDGCHC 2 cut(s) 546, 896
SfaNI GCATC 3 cut(s) 23, 214, 710
SfcI CTRYAG 1 cut(s) 492
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 4 cut(s) 394, 719, 1024, 1037
Sse9I AATT 7 cut(s) 67, 163, 232, 349, 375, 644, 664
SsiI CCGC 7 cut(s) 855, 887, 915, 921, 924, 942, 1047
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 896
StyD4I CCNGG 2 cut(s) 977, 1032
StyI CCWWGG 3 cut(s) 517, 550, 1027
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 2 cut(s) 549, 959
TaqI TCGA 6 cut(s) 6, 71, 128, 576, 687, 992
TasI AATT 7 cut(s) 67, 163, 232, 349, 375, 644, 664
TatI WGTACW 2 cut(s) 564, 713
TauI GCSGC 2 cut(s) 889, 926
TfiI GAWTC 2 cut(s) 8, 130
Tru1I TTAA 2 cut(s) 503, 611
Tru9I TTAA 2 cut(s) 503, 611
TscAI CASTG 1 cut(s) 489
TspDTI ATGAA 3 cut(s) 78, 230, 736
TspRI CASTG 1 cut(s) 489
Tth111I GACNNNGTC 1 cut(s) 967
VpaK11BI GGWCC 4 cut(s) 394, 719, 1024, 1037
XagI CCTNNNNNAGG 1 cut(s) 976
XapI RAATTY 1 cut(s) 67
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.